Anomeric 1,2,3-triazole-linked sialic acid derivatives show selective inhibition towards a bacterial neuraminidase over a trypanosome trans-sialidase

• Peterson de Andrade,
• Sanaz Ahmadipour and
• Robert A. Field

Beilstein J. Org. Chem. 2022, 18, 208–216, doi:10.3762/bjoc.18.24

• anomeric configuration of 1 was based on the chemical shift of H3eq, which is located in lower magnetic field (over 2.5 ppm) when compared to a β-glycoside (under 2.5 ppm) [27]. Additionally, the anomeric configuration can be determined through the coupling pattern of C-1 in a selective proton decoupled

Glycosylated coumarins, flavonoids, lignans and phenylpropanoids from Wikstroemia nutans and their biological activities

• Meifang Wu,
• Xiangdong Su,
• Yichuang Wu,
• Yuanjing Luo,
• Ying Guo and
• Yongbo Xue

Beilstein J. Org. Chem. 2022, 18, 200–207, doi:10.3762/bjoc.18.23

• including its absolute configuration was elucidated based on a combination of 1D and 2D NMR, UV, IR, HRESIMS spectroscopic data, as well as chemical transformation. Compounds 1–17 were first isolated from the plant species W. nutans, while compounds 1–3, 8, and 11 were reported from the genus Wikstroemia

• . The ROESY spectrum (Supporting Information File 1, Figure S34, recorded in DMSO-d6) showed correlations of H-3'' and H-1'' /H-5''/HO-4'', indicating the ᴅ-configuration of glucose, while the ROESY correlations of H-1'''/H-3'''/H-5''', H-3'''/H-5''', and H-2'''/H-4''' implied the xylose should be in ᴅ

• -configuration (Figure 3). The key HMBC correlations of δH 4.35 and 4.75 (Glc H-6'') with δC 106.8 (Xyl C-1''') and the reverse correlation of δH 4.94 (Xyl H-1''') with δC 170.6 (Glc C-6'') suggested the linkage of the xylopyranosyl moiety at C-6 of the glucopyranosyl unit. This deduction was further confirmed

Synthesis and late stage modifications of Cyl derivatives

• Phil Servatius and
• Uli Kazmaier

Beilstein J. Org. Chem. 2022, 18, 174–181, doi:10.3762/bjoc.18.19

• decided to take advantage of an asymmetric chelate enolate Claisen rearrangement, which should allow the stereoselective generation of the unusual amino acid, depending on the configuration of the chiral allylic alcohol used [41][42]. If a peptide Claisen rearrangement [43][44][45] is carried out with a

Asymmetric organocatalytic Michael addition of cyclopentane-1,2-dione to alkylidene oxindole

• Estelle Silm,
• Ivar Järving and
• Tõnis Kanger

Beilstein J. Org. Chem. 2022, 18, 167–173, doi:10.3762/bjoc.18.18

• substituted oxindoles with an E-configuration of the double bond. The results are presented in Scheme 2. Both electron-withdrawing (Scheme 2, 3f–h) and electron-donating groups (Scheme 2, 3m,n) at the phenyl ring of the benzylidene moiety were tolerated. The position of the halide at the aromatic ring did not

• compounds with non-aromatic substituents at the double bond (3i and 3o). The relative anti-configuration of the vicinal diastereotopic hydrogens was determined by comparing the 3JHH coupling constants of the major diastereomer with those of the minor diastereomer. The constants were larger for the major

• diastereomer, meaning vicinal hydrogens were in anti-configuration. In all previous experiments only E-isomers were used. In the case of the 3-nitro-substituted starting material 2q we managed to separate isomers and carried out the reaction with both the E- and Z-isomer. In these experiments, both isomers

Tenacibactins K–M, cytotoxic siderophores from a coral-associated gliding bacterium of the genus Tenacibaculum

• Yasuhiro Igarashi,
• Yiwei Ge,
• Tao Zhou,
• Amit Raj Sharma,
• Enjuro Harunari,
• Naoya Oku and
• Agus Trianto

Beilstein J. Org. Chem. 2022, 18, 110–119, doi:10.3762/bjoc.18.12

• uniquely, both of the olefinic proton resonances (H12 and H13) were broadened at 25 °C (Figure 3a). However, upon heating to 50 °C, H12 split into doublet-triplet, which allowed the extraction of 3JH12,H13 = 11.4 Hz to deduce a cis configuration. H13, in contrast, broadened more severely at the raised

Chemical and chemoenzymatic routes to bridged homoarabinofuranosylpyrimidines: Bicyclic AZT analogues

• Sandeep Kumar,
• Jyotirmoy Maity,
• Banty Kumar,
• Sumit Kumar and
• Ashok K. Prasad

Beilstein J. Org. Chem. 2022, 18, 95–101, doi:10.3762/bjoc.18.10

• postulated a mechanistic pathway for this cyclization process, where two consecutive inversions of configuration at the C5′ centre enabled the retention of stereochemistry. Thus, formation of 5,6-epoxide moieties was common in case of hexose carbohydrates, where the C6-OH group attacked the C5 centre and

• substituted the mesyl group present at C5 to form 5,6-epoxide moieties [32][33][34]. Herein, we elucidated the mechanistic pathway for conversion of 16a,b into 9a,b through the formation of an intermediate epoxide II, which has (S) stereochemistry at the C5′ due to first inversion of configuration by attack

• from the C6′-OH group (Scheme 6). The second inversion at the C5′ centre occurred when the C2′-OH attacked the same chiral centre and opened the epoxide ring by SN2 reaction and inverted the configuration of the centre into (R). In the chemical route for synthesis of bridged nucleosides 9a,b, an

Efficient and regioselective synthesis of dihydroxy-substituted 2-aminocyclooctane-1-carboxylic acid and its bicyclic derivatives

• İlknur Polat,
• Selçuk Eşsiz,
• Uğur Bozkaya and
• Emine Salamci

Beilstein J. Org. Chem. 2022, 18, 77–85, doi:10.3762/bjoc.18.7

• -functional theory (DFT) computations were used to explain the reaction mechanism for the ring opening of the epoxide and the formation of five-membered lactones. The stereochemistry of the synthesized compounds was determined by 1D and 2D NMR spectroscopy. The configuration of methyl 6-hydroxy-9-oxo-8

• ppm has cross peaks with the protons resonating at 2.96, 3.95, and 5.39 ppm, respectively, in the COSY spectrum. The cross peak between H-2 and H-3/H-4 suggests that the proton H-2 should have a trans configuration relative to the proton H-3. Removal of the Boc protection by HCl resulted in the

Bifunctional thiourea-catalyzed asymmetric [3 + 2] annulation reactions of 2-isothiocyanato-1-indanones with barbiturate-based olefins

• Jiang-Song Zhai and
• Da-Ming Du

Beilstein J. Org. Chem. 2022, 18, 25–36, doi:10.3762/bjoc.18.3

• solubility of this substrate. The absolute configuration of the chiral product 3ae was unambiguously identified on the basis of single-crystal X-ray diffraction analysis as (2S,3'S) (Figure 4) [33]. The configurations of the other products were assigned by analogy to 3ae. In order to further prove the

The enzyme mechanism of patchoulol synthase

• Houchao Xu,
• Bernd Goldfuss,
• Gregor Schnakenburg and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2022, 18, 13–24, doi:10.3762/bjoc.18.2

• no. 1491695) [17], but these data did not allow to conclude on the absolute configuration of compound 3. We now obtained 3 as a crystalline material and performed an X-ray structural analysis through anomalous dispersion using Cu Kα irradiation (Table S2 in Supporting Information File 1), resulting

• in the structure of 3 with the absolute configuration as shown in Figure 2. The absolute configuration of 3 was furthermore independently confirmed through a stereoselective deuteration strategy (Scheme 4; all labelling experiments of this study are summarised in Supporting Information File 1, Table

• S3). Using dimethylallyl diphosphate (DMAPP) and (E)- and (Z)-(4-13C,4-2H)isopentenyl diphosphate (IPP) [18] in conjunction with FPP synthase (FPPS) from Streptomyces coelicolor [19] and PTS (Supporting Information File 1, Figure S11), stereogenic centres of known configuration are introduced at the

Peptide stapling by late-stage Suzuki–Miyaura cross-coupling

• Hendrik Gruß,
• Rebecca C. Feiner,
• Ridhiwan Mseya,
• David C. Schröder,
• Michał Jewgiński,
• Kristian M. Müller,
• Rafał Latajka,
• Antoine Marion and
• Norbert Sewald

Beilstein J. Org. Chem. 2022, 18, 1–12, doi:10.3762/bjoc.18.1

• macrocycle. The amide bond in the staple of P5 is connected to two flexible aliphatic chains and may exist in cis and trans configuration. The energy difference in the analogue N-methylacetamide (NMA) favours the trans isomer by about 2.3 kcal mol−1, which corresponds to an expected cis/trans ratio of about

• isomer tends to be more helical than the cis variant. The CD spectra of P5.1 and P5.2 indicate that the latter has a more helical character, which leads us to speculate that P5.1 corresponds to the cis diastereomer, while P5.2 presents the amide bond in the staple in a trans configuration. Furthermore

Unsaturated fatty acids and a prenylated tryptophan derivative from a rare actinomycete of the genus Couchioplanes

• Shun Saito,
• Kanji Indo,
• Naoya Oku,
• Hisayuki Komaki,
• Masashi Kawasaki and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2021, 17, 2939–2949, doi:10.3762/bjoc.17.203

• unused carbon (δH 177.1, C-1) and the molecular formula. A NOESY correlation between H-11 and H-12 supported an E-configuration for the C-4/C-5 double bond. The established planar structure was identical to that of a fungal metabolite phialomustin B [26], for which specific rotation, enumerated 1H and

• 13C NMR data, and high-resolution ESIMS data were presented. While an S-configuration was assigned for phialomustin B based on its positive specific rotation ([α]D25 +55.5, c 1.5, CHCl3) in comparison with those of synthetic standards [26], opposite negative signs in CHCl3 and MeOH ([α]D27 –12, c

• 0.035, CHCl3; [α]D25 –76.0, c 0.05, MeOH), though the rotatory power in CHCl3 not as large as expected presumably due to the sample scarcity, supported an R-configuration. Therefore, 3 was speculated to be (R)-(−)-phialomustin B. The molecular formula of 4, determined to be C10H16O3 on the basis of HR

Biological properties and conformational studies of amphiphilic Pd(II) and Ni(II) complexes bearing functionalized aroylaminocarbo-N-thioylpyrrolinate units

• Samet Poyraz,
• Samet Belveren,
• Sabriye Aydınoğlu,
• Mahmut Ulger,
• Abel de Cózar,
• Maria de Gracia Retamosa,
• Jose M. Sansano and
• H. Ali Döndaş

Beilstein J. Org. Chem. 2021, 17, 2812–2821, doi:10.3762/bjoc.17.192

• successfully performed using the corresponding acetate salt in methanol at rt for 48 h, affording cis-L1-M, L2-M, and L3-M in yields depicted in Scheme 1. The relative configuration was unambiguously determined by comparison of their corresponding 1H NMR with the reported similar 1H NMR with other metals, and

• the cis-configuration determined according to X-ray diffraction patterns observed in precedent works [15][16]. Although a structural motif of the metallosurfactants is having a long alkyl chain (hydrophobic part), in these cases, L1–L3 possessed four hydrophobic domains, which are responsible of the

Highly stereocontrolled total synthesis of racemic codonopsinol B through isoxazolidine-4,5-diol vinylation

• Lukáš Ďurina,
• Anna Ďurinová,
• František Trejtnar,
• Ľuboš Janotka,
• Lucia Messingerová,
• Jana Doháňošová,
• Ján Moncol and
• Róbert Fischer

Beilstein J. Org. Chem. 2021, 17, 2781–2786, doi:10.3762/bjoc.17.188

• cancer cell lines [14]. For this reason, the compounds 1 and 2 were prepared first in their racemic form to begin the initial biological studies. Results and Discussion The starting isoxazolidine-4,5-diol 3, possessing the desired 3,4-trans configuration (Scheme 1), will be prepared by using our

• the expected high syn diol diastereoselectivity (Scheme 1). The obtained anti,syn-(hydroxyamino)alkenol 4 will be then subjected to reductive cleavage of the N–O bond. Next, a key intermediate epoxide 5 with the desired syn (threo) configuration between the hydroxy group and the epoxide oxygen could

• be prepared by substrate-directed epoxidation. A subsequent SN2 intramolecular epoxide ring-opening cyclization could provide an N-Cbz-protected pyrrolidine derivative with a hydroxymethyl group at C-5 and with trans configuration relative to the hydroxy group at C-4. Finally, (±)-codonopsinol B (1

Synthetic strategies toward 1,3-oxathiolane nucleoside analogues

• Umesh P. Aher,
• Dhananjai Srivastava,
• Girij P. Singh and
• Jayashree B. S

Beilstein J. Org. Chem. 2021, 17, 2680–2715, doi:10.3762/bjoc.17.182

• natural nucleosides with β-ᴅ-configuration in the carbohydrate part. These molecules are known to have a common HIV transcriptase inhibition mechanism, in which cytoplasmic enzymes progressively phosphorylate the analogues to 5'-triphosphates. This then competes with the naturally occurring nucleoside

• with ʟ-configuration was discovered, and this led to the approval of 3TC (lamivudine, (−)-BCH-189, 1) as an antiviral drug and, among many others, to the use of FTC (emtricitabine, 2) and ʟ-FMAU (clevudine). ʟ-Nucleosides can have a comparable and often greater antiviral efficacy than the ᴅ

• -counterparts, with more favorable toxicological profiles and a greater stability [10]. A variety of nucleoside analogues as possible antiviral agents has appeared, possessing the unusual β-ʟ-configuration. Work has been motivated by the fact that, while retaining strong antiviral and/or antibacterial activity

AlBr₃-Promoted stereoselective anti-hydroarylation of the acetylene bond in 3-arylpropynenitriles by electron-rich arenes: synthesis of 3,3-diarylpropenenitriles

• Yelizaveta Gorbunova,
• Dmitry S. Ryabukhin and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2021, 17, 2663–2667, doi:10.3762/bjoc.17.180

• rather regioselectively giving mainly Z-isomers of nitriles 2, as products of an anti-addition of hydrogen and the aryl group to the carbon–carbon triple bond. Only in three cases, mixtures of E,Z-isomers (2b,l,n) in a ratio of ≈1:1 were obtained. The E,Z-configuration of compounds 2a–o was determined by

• NOESY correlations between the vinyl proton and the aromatic protons or methyl groups in neighboring aryl substituents (see Supporting Information File 1). However, the configuration of nitrile 2o was unclear. Benzene, o-, m-, p-xylenes, and 1,2,4-trimethylbenzene (mesitylene) were included in the

Ligand-dependent stereoselective Suzuki–Miyaura cross-coupling reactions of β-enamido triflates

• Tomáš Chvojka,
• Athanasios Markos,
• Svatava Voltrová,
• Radek Pohl and
• Petr Beier

Beilstein J. Org. Chem. 2021, 17, 2657–2662, doi:10.3762/bjoc.17.179

• 43 Prague 2, Czech Republic 10.3762/bjoc.17.179 Abstract The stereoselective Suzuki–Miyaura cross-coupling of (Z)-β-enamido triflates is demonstrated. Depending on the nature of the ligand in the palladium catalyst, either retention or inversion of the configuration during the synthesis of β,β

• were found to undergo cross-coupling reactions with retention of configuration on the double bond and served as valuable starting materials for the synthesis of functionalized β,β-disubstituted enamides (Scheme 1A) [21][23]. In the last decade, only a few reports describing isomerization of the double

• bond of vinyl (pseudo)halides during the Suzuki coupling have been published [25][26][27][28][29]. Typically, inversion of configuration occurs on substrates containing a double bond in conjugation with an electron-withdrawing group, such as the carbonyl group in enones [27][30]. We hypothesized that

Solvent-free synthesis of enantioenriched β-silyl nitroalkanes under organocatalytic conditions

• Akhil K. Dubey and
• Raghunath Chowdhury

Beilstein J. Org. Chem. 2021, 17, 2642–2649, doi:10.3762/bjoc.17.177

• dictated by the absolute configuration of the products. To our delight, catalyst VIII, the pseudoenantiomeric catalyst of VII, allowed to synthesize the enantiomeric products ent-3 (Scheme 3) in high yields and enantioselectivities comparable to the corresponding enantiomers 3 under the optimized reaction

• was found to adopt “(S)” configuration which was unambiguously established by single crystal X-ray diffraction analysis (Figure 1) [45]. To prove the scalability of this synthetic method, we examined the synthesis of 3c and ent-3d in a 1 mmol scale (Scheme 5). The products 3c and ent-3d were isolated

N-Sulfinylpyrrolidine-containing ureas and thioureas as bifunctional organocatalysts

• Viera Poláčková,
• Dominika Krištofíková,
• Boglárka Némethová,
• Renata Górová,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2021, 17, 2629–2641, doi:10.3762/bjoc.17.176

• the Michael adducts has the lowest Gibbs free energy of activation of 40.4 kJ·mol−1. The Gibbs free energies of activations for the (S,S)-C2 catalyst are only slightly higher than those for the (S,R)-C2 catalyst. These calculations support the experimental observation that the configuration of the

• sulfur stereogenic center does not play an important role in the Michael addition (Figure 3b). The stereochemical outcome of the Michael addition is dictated mainly by the configuration of the proline unit. The calculated transition states for the Michael addition with both diastereomeric catalysts (S,R

• . Sulfinylurea catalysts were more active than the corresponding thioureas. The additional stereogenic center on the sulfur plays only a minor role on the stereoselectivity of the reaction, which is governed mainly by the configuration of the proline moiety. DFT calculations elucidated the stereochemical action

Synthesis of new bile acid-fused tetrazoles using the Schmidt reaction

• Dušan Đ. Škorić,
• Olivera R. Klisurić,
• Dimitar S. Jakimov,
• Marija N. Sakač and
• János J. Csanádi

Beilstein J. Org. Chem. 2021, 17, 2611–2620, doi:10.3762/bjoc.17.174

• observations about the preferred migration of the more substituted carbon atom during the Schmidt reaction [49]. Also, a retention of configuration at the C-13 position was confirmed by NOE NMR experiments. The chemical shift of some protons in compounds 13 and 14 exhibited effects of magnetic anisotropy from

• configuration at C-8 was confirmed. Similarly to C-homotetrazoles, magnetic anisotropy effects of the aromatic tetrazole ring are obvious in 1H NMR spectra of compounds 17 and 18. For example, the chemical shift of the H-4α proton is much lower than expected (0.45 ppm). Interestingly, we noticed that crystals

Targeting active site residues and structural anchoring positions in terpene synthases

• Anwei Hou and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2021, 17, 2441–2449, doi:10.3762/bjoc.17.161

• . Table S3 and Figure S8. Determination of the absolute configuration of compounds 8 and 9. Partial HSQC spectra of A) unlabelled 8, B) unlabelled 9, C) the mixture of labelled 8 and 9 obtained from (R)-(1-13C,1-2H)GGPP, and D) the mixture of labelled 8 and 9 obtained from (S)-(1-13C,1-2H)GGPP. The colour

Enantioselective PCCP Brønsted acid-catalyzed aminalization of aldehydes

• Martin Kamlar,
• Robert Reiberger,
• Martin Nigríni,
• Ivana Císařová and
• Jan Veselý

Beilstein J. Org. Chem. 2021, 17, 2433–2440, doi:10.3762/bjoc.17.160

• time. To determine the absolute configuration of aminals 3a–t, derivative 3l was subjected to X-ray crystallographic analysis. The absolute configuration of the stereogenic center (C1) was assigned as R (Figure 2, for details see Supporting Information File 1) [36], which is in agreement with the

• configuration of aminals obtained by List and co-workers [14]. Conclusion In summary, we have reported an organocatalytic asymmetric aminalization reaction between aldehydes and anthranilamides catalyzed by a PCCP catalyst as a cheap and readily available option to conventional chiral BINOL phosphoric acids

Efficient synthesis of polyfunctionalized carbazoles and pyrrolo[3,4-c]carbazoles via domino Diels–Alder reaction

• Ren-Jie Fang,
• Chen Yan,
• Jing Sun,
• Ying Han and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2021, 17, 2425–2432, doi:10.3762/bjoc.17.159

• this compound. Thus, the isomers 3a and 3b are diastereoisomers. It is known that the starting chalcones usually have E-configuration. The phenyl group and p-chlorobenzoyl group still exist in the trans-position in both diastereoisomers 3a and 3b as in the starting chalcone. This result clearly showed

Synthesis of 5-arylacetylenyl-1,2,4-oxadiazoles and their transformations under superelectrophilic activation conditions

• Andrey I. Puzanov,
• Dmitry S. Ryabukhin,
• Anna S. Zalivatskaya,
• Dmitriy N. Zakusilo,
• Darya S. Mikson,
• Irina A. Boyarskaya and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2021, 17, 2417–2424, doi:10.3762/bjoc.17.158

• o-, m-, p-xylenes) in TfOH at room temperature for 1 h leading to products of hydroarylation of the acetylene bond, compounds (E/Z)-5a–g, were carried out (Scheme 5). This reaction gave E/Z-isomers 5b–g, their stereochemical configuration was determined by H,H NOESY correlations between the vinyl

Strategies for the synthesis of brevipolides

• Yudhi D. Kurniawan and
• A'liyatur Rosyidah

Beilstein J. Org. Chem. 2021, 17, 2399–2416, doi:10.3762/bjoc.17.157

• compounds, 1–6, were given the trivial names of brevipolides A–F, respectively, and the absolute configuration was determined by analysis of data obtained from their CD spectra and by Mosher’s ester formation, as C6R, C1’S, C2’S, and C4’S. The C6’ stereocenter at that time could not be established due to a

• rapid epimerization during cinnamate hydrolysis. Later, in 2013 Pereda-Miranda and co-workers isolated ten compounds, namely brevipolides A–J (1–10), from the aerial part of Hyptis brevipes Poit. collected in Mexico [12]. The C6’S configuration was then determined by X-ray crystallographic data of the

• comprehensive combination of quantum mechanical calculations and experimental spectroscopic analysis of their NMR and ECD data, to have a unique tetrahydrofuran ring instead of the cyclopropane functionality. The absolute configuration of these five compounds were evaluated and all conserved as C6R, C1’S, C2’R

Isolation and characterization of new phenolic siderophores with antimicrobial properties from Pseudomonas sp. UIAU-6B

• Emmanuel T. Oluwabusola,
• Olusoji O. Adebisi,
• Fernando Reyes,
• Kojo S. Acquah,
• Mercedes De La Cruz,
• Larry L. Mweetwa,
• Joy E. Rajakulendran,
• Digby F. Warner,
• Deng Hai,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2021, 17, 2390–2398, doi:10.3762/bjoc.17.156

• analyses. The absolute configuration of the threonine residue in compounds 1–5 was determined by Marfey analysis. The antimicrobial evaluation of compound 4 exhibited the most potent activity against vancomycin-sensitive Enterococcus faecium VS144754, followed by 3 and 5, with MIC values ranging from 8 to

• carboxamide C-10 (δC 172.9) and the quaternary carbon C-16 (δC 140.2), between H2-15 and H-18/20 to the quaternary carbon C-16, and a strong correlation from H-15 and H-19 to C-17/20 (δC 129.9). The new oxazoline derivative 5 was named pseudomonbactin B. The absolute configuration of the threonine residue in