Young investigators in natural products chemistry, biosynthesis, and enzymology

• Jeffrey D. Rudolf,
• Lena Barra and
• Takayoshi Awakawa

Beilstein J. Org. Chem. 2024, 20, 2720–2721, doi:10.3762/bjoc.20.229

• clusters, and enzymes, development of chemical probes, biocatalysis and chemoenzymatic total synthesis, enzymatic mechanisms, and computational investigations of chemical structures and reactions. All of the major classes of natural products are represented here: nonribosomal peptides, ribosomally

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

• Nian Li,
• Ruzal Sitdikov,
• Ajit Prabhakar Kale,
• Joost Steverlynck,
• Bo Li and
• Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

Catalysing (organo-)catalysis: Trends in the application of machine learning to enantioselective organocatalysis

• Stefan P. Schmid,
• Leon Schlosser,
• Frank Glorius and
• Kjell Jorner

Beilstein J. Org. Chem. 2024, 20, 2280–2304, doi:10.3762/bjoc.20.196

• Research (NCCR) Catalysis, ETH Zurich, Zurich CH-8093, Switzerland 10.3762/bjoc.20.196 Abstract Organocatalysis has established itself as a third pillar of homogeneous catalysis, besides transition metal catalysis and biocatalysis, as its use for enantioselective reactions has gathered significant

• transition metal catalysis [46][47][48] and biocatalysis [49][50][51], they are however not common for organocatalysis. Therefore, much research has been devoted to develop models that perform well on the available small data sets [52][53]. 1.2 Representation In order to be processed by any ML model, the

Cell-free protein synthesis with technical additives – expanding the parameter space of in vitro gene expression

• Tabea Bartsch,
• Stephan Lütz and
• Katrin Rosenthal

Beilstein J. Org. Chem. 2024, 20, 2242–2253, doi:10.3762/bjoc.20.192

• Tabea Bartsch Stephan Lutz Katrin Rosenthal Department of Biochemical and Chemical Engineering, TU Dortmund University, Emil-Figge-Straße 66, 44227 Dortmund, Germany School of Science, Constructor University, Campus Ring 6, 28759 Bremen, Germany 10.3762/bjoc.20.192 Abstract Biocatalysis has

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• other bioactive compounds. By providing an overview of the various methylation options available, this review is intended to emphasise the biocatalytic potential of RiPP methyltransferases and their impact on the field of natural product chemistry. Keywords: biocatalysis; methylation; post

• varying acceptor regions to demonstrate the broad range of methylated positions in ribosomally synthesised peptides (Figure 1). This article also highlights the potential application of RiPP MTs in biocatalysis and their ability to enable the production of bioactive compounds with tailored chemical

• peptide methylation. Biocatalysis provides an efficient and sustainable alternative to chemical synthesis strategies. Both NRPS and RiPP biosynthetic machineries can be used for cell-based or in vitro strategies [53]. Especially well suited as biocatalysts are MTs from RiPP pathways, as they demonstrate

Chemoenzymatic synthesis of macrocyclic peptides and polyketides via thioesterase-catalyzed macrocyclization

• Senze Qiao,
• Zhongyu Cheng and
• Fuzhuo Li

Beilstein J. Org. Chem. 2024, 20, 721–733, doi:10.3762/bjoc.20.66

• attention is given to the strategies of mimics formation to demonstrate how biocatalysis provides an elegant link between chemistry and biology. Review Macrocyclic peptides Since first being reported in the 1960s [26], solid-phase peptide synthesis (SPPS) has been an invaluable tool for preparing numerous

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• construction of the 8-membered ring from an appropriate cyclopentane precursor. The proposed strategies include metathesis, Nozaki–Hiyama–Kishi (NHK) cyclization, Pd-mediated cyclization, radical cyclization, Pauson–Khand reaction, Lewis acid-promoted cyclization, rearrangement, cycloaddition and biocatalysis

• precursor. The proposed strategies include metathesis, Nozaki–Hiyama–Kishi (NHK) cyclization, Pd-mediated cyclization, radical cyclization (including SmI2), Pauson–Khand reaction, Lewis acid-promoted cyclization, rearrangement, cycloaddition, and biocatalysis. In particular, the purpose will focus on the

Inline purification in continuous flow synthesis – opportunities and challenges

• Jorge García-Lacuna and
• Marcus Baumann

Beilstein J. Org. Chem. 2022, 18, 1720–1740, doi:10.3762/bjoc.18.182

• that would otherwise be prohibitive or achieve readily scalable processes suitable for industrial applications [6][7][8][9]. In addition, flow chemistry has become the method of choice in modern research areas including photo- [10][11][12][13], electrochemistry [14][15][16], and biocatalysis [17][18

• . As different injection valves are used, a series of columns can be employed for a continuous stream of crude material being purified. The system was applied to separate an intermediate during the synthesis of isoniazid [45] (Table 2, entry 4). In the field of biocatalysis, Raston, Weiss and co

• used to trap carboxylic acids, from which the product can be released with diluted solutions of formic acid [95]. Another strategy that is applicable in the context of biocatalysis involves Ni–NTA resins used for protein purification which are commonly packed in cartridges to enable automated peptide

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• , where an inorganic element is not a part of the active principle, that functions by donating or removing electrons or protons [1]. This definition distinguishes organocatalysis from the other two large catalysis areas: metal-complex catalysis and enzymatic/biocatalysis. The advantages of organocatalysts

Efficient production of clerodane and ent-kaurane diterpenes through truncated artificial pathways in Escherichia coli

• Fang-Ru Li,
• Xiaoxu Lin,
• Qian Yang,
• Ning-Hua Tan and
• Liao-Bin Dong

Beilstein J. Org. Chem. 2022, 18, 881–888, doi:10.3762/bjoc.18.89

• chemoenzymatic strategies and biocatalysis in preparation of high value diterpenoid natural products. (a) The natural pathways (MVA: blue, MEP: green) for producing IPP and DMAPP; (b) the carbon skeletons of clerodane and kaurane diterpenes and representative bioactive natural products. acetoacetyl-CoA thiolase

Shift of the reaction equilibrium at high pressure in the continuous synthesis of neuraminic acid

• Jannis A. Reich,
• Miriam Aßmann,
• Kristin Hölting,
• Paul Bubenheim,
• Jürgen Kuballa and
• Andreas Liese

Beilstein J. Org. Chem. 2022, 18, 567–579, doi:10.3762/bjoc.18.59

• Jannis A. Reich Miriam Assmann Kristin Holting Paul Bubenheim Jurgen Kuballa Andreas Liese Institute of Technical Biocatalysis, Hamburg University of Technology, Denickestr. 15, 21073 Hamburg, Germany GALAB Laboratories GmbH, Am Schleusengraben 7, 21029 Hamburg, Germany 10.3762/bjoc.18.59

A comprehensive review of flow chemistry techniques tailored to the flavours and fragrances industries

• Guido Gambacorta,
• James S. Sharley and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2021, 17, 1181–1312, doi:10.3762/bjoc.17.90

• media was optimised by Gröger et al. using a modified proline catalyst. In this example, the authors employed tubular coiled reactors and, to enhance the mixing effect, high flow rates and long tube lengths were applied (Scheme 7). As biocatalysis is becoming more and more important, one of the major

Designed whole-cell-catalysis-assisted synthesis of 9,11-secosterols

• Marek Kõllo,
• Marje Kasari,
• Villu Kasari,
• Tõnis Pehk,
• Ivar Järving,
• Margus Lopp,
• Arvi Jõers and
• Tõnis Kanger

Beilstein J. Org. Chem. 2021, 17, 581–588, doi:10.3762/bjoc.17.52

• chemistry and synthetic biology. Stereo- and regioselective hydroxylation at C9 (steroid numbering) is carried out using whole-cell biocatalysis, followed by the chemical cleavage of the C–C bond of the vicinal diol. The two-step method features mild reaction conditions and completely excludes the use of

• total synthesis sequence. Inspired by several enzymatic oxidations [22][23][24][25], we envisioned to carry out oxidation at C9 in an environmentally benign way using an oxidation by a whole-cell biocatalysis method. The first, and so far the only chemoenzymatic synthesis of 9,11-secosterols using

• (DE3) strain, and protein expression was induced by the addition of IPTG. Substrates of biocatalysis were added together with the IPTG inducer. The whole-cell biocatalysis was performed overnight at 30 °C in a rich medium with continuous shaking. Cell pellet and culture supernatant were collected the

Coupling biocatalysis with high-energy flow reactions for the synthesis of carbamates and β-amino acid derivatives

• Alexander Leslie,
• Thomas S. Moody,
• Megan Smyth,
• Scott Wharry and
• Marcus Baumann

Beilstein J. Org. Chem. 2021, 17, 379–384, doi:10.3762/bjoc.17.33

• species. This strategy thus highlights the applicability of this work towards the creation of important chemical building blocks for the pharmaceutical and speciality chemical industries. Keywords: biocatalysis; CALB; Curtius rearrangement; flow synthesis; reaction telescoping; Introduction Continuous

Hierarchically assembled helicates as reaction platform – from stoichiometric Diels–Alder reactions to enamine catalysis

• David Van Craen,
• Jenny Begall,
• Johannes Großkurth,
• Leonard Himmel,
• Oliver Linnenberg,
• Elisabeth Isaak and
• Markus Albrecht

Beilstein J. Org. Chem. 2020, 16, 2338–2345, doi:10.3762/bjoc.16.195

• . thesis [33] of Dr. David Van Craen. Funding Support by the international graduate school SeleCa – Selectivity in Chemo- and Biocatalysis of the DFG (Deutsche Forschungsgemeinschaft) is gratefully acknowledged.

When metal-catalyzed C–H functionalization meets visible-light photocatalysis

• Lucas Guillemard and
• Joanna Wencel-Delord

Beilstein J. Org. Chem. 2020, 16, 1754–1804, doi:10.3762/bjoc.16.147

• catalysis with a second catalytic system has sparked significant interest from the scientific community. Accordingly, numerous unprecedented reactions involving photoredox catalysis in synergy with other activation modes including Brønsted/Lewis acid catalysis, organocatalysis, enzymatic biocatalysis, or

A green, economical synthesis of β-ketonitriles and trifunctionalized building blocks from esters and lactones

• Daniel P. Pienaar,
• Kamogelo R. Butsi,
• Amanda L. Rousseau and
• Dean Brady

Beilstein J. Org. Chem. 2019, 15, 2930–2935, doi:10.3762/bjoc.15.287

• Information File 528: Experimental procedures, compound characterization data and NMR spectra. Acknowledgements KRB thanks the National Research Foundation (South Africa) and the SABINA network for funding. DP and DB gratefully acknowledge the Department of Science and Technology Biocatalysis Initiative

A review of asymmetric synthetic organic electrochemistry and electrocatalysis: concepts, applications, recent developments and future directions

• Munmun Ghosh,
• Valmik S. Shinde and
• Magnus Rueping

Beilstein J. Org. Chem. 2019, 15, 2710–2746, doi:10.3762/bjoc.15.264

• chemistry. Several challenges need to be addressed in order to see widespread application. While recent advancements in electrochemistry have been promising, readily available parallel screening technologies similar to those in homogeneous, heterogeneous, photo- as well as biocatalysis need to be developed

Synthetic terpenoids in the world of fragrances: Iso E Super^® is the showcase

• Alexey Stepanyuk and
• Andreas Kirschning

Beilstein J. Org. Chem. 2019, 15, 2590–2602, doi:10.3762/bjoc.15.252

• , (+)-α-bulnesene, (−)-α-guajene, (−)-β-patchoulene and (−)-seychellene) with a slightly camphoraceous, woody balsamic odour [6]. Enzymatic derivatisation of terpenes by means of biocatalysis is another opportunity to create new fragrance molecules or to achieve chiral resolution of racemates. The former

Extending mechanochemical porphyrin synthesis to bulkier aromatics: tetramesitylporphyrin

• Qiwen Su and
• Tamara D. Hamilton

Beilstein J. Org. Chem. 2019, 15, 1149–1153, doi:10.3762/bjoc.15.111

• out important functions in nature including light harvesting (i.e., chlorophyll), oxygen transport (i.e., heme), biocatalysis, and electron transfer. The ability to synthesize porphyrins bearing a variety of chemical and steric functionalities on the periphery is important in fields as diverse as

Aqueous olefin metathesis: recent developments and applications

• Valerio Sabatino and
• Thomas R. Ward

Beilstein J. Org. Chem. 2019, 15, 445–468, doi:10.3762/bjoc.15.39

• performing catalysis in a more sustainable medium, it still remains challenging to achieve due to the detrimental effect of water. Despite this limitation, olefin metathesis widely contributes to polymer chemistry, drug discovery and biocatalysis. Several technologies relying on aqueous metathesis have been

Thiol-free chemoenzymatic synthesis of β-ketosulfides

• Adrián A. Heredia,
• Martín G. López-Vidal,
• Marcela Kurina-Sanz,
• Fabricio R. Bisogno and
• Alicia B. Peñéñory

Beilstein J. Org. Chem. 2019, 15, 378–387, doi:10.3762/bjoc.15.34

• ][40]. Such a combination has been scarcely exploited as compared to strategies comprising transition metal catalysis and biocatalysis [41] or, in a lesser extent, organocatalysis and enzymes [42]. In this context, a versatile and robust synthesis of β-ketosulfides avoiding the use of thiols under

Olefin metathesis catalysts embedded in β-barrel proteins: creating artificial metalloproteins for olefin metathesis

• Daniel F. Sauer,
• Johannes Schiffels,
• Takashi Hayashi,
• Ulrich Schwaneberg and
• Jun Okuda

Beilstein J. Org. Chem. 2018, 14, 2861–2871, doi:10.3762/bjoc.14.265

• Biocatalysis” (SeleCa), the Bundesministerium für Bildung und Forschung (BMBF) (FKZ: 031B0297), the Japan Society for the Promotion of Science (JSPS) through the Japanese-German Graduate Externship Program on Environmentally Benign Bio- and Chemical Processes, and JSPS KAKENHI Grant Number JP15H05804.

β-Hydroxy sulfides and their syntheses

• Mokgethwa B. Marakalala,
• Edwin M. Mmutlane and
• Henok H. Kinfe

Beilstein J. Org. Chem. 2018, 14, 1668–1692, doi:10.3762/bjoc.14.143

• biocatalysis for the asymmetric synthesis of β-hydroxy sulfides still remains unexplored. 3.1.2 Disulfides as nucleophiles. Whilst thiols are excellent nucleophiles and can open epoxides under a variety of conditions as detailed above, they can be awfully odoriferous and unpleasant to work with [58]. As an