New trends in nanobiotechnology

• Pau-Loke Show,
• Kit Wayne Chew,
• Wee-Jun Ong,
• Sunita Varjani and
• Joon Ching Juan

Beilstein J. Nanotechnol. 2023, 14, 377–379, doi:10.3762/bjnano.14.32

• SARS-CoV-2 receptor binding domain by molecular docking” [6]. This research work showcases peptides that are capable to bind and neutralize the SARS-CoV-2 virus through molecular docking. The latest developments of the molecular docking of peptides by molecular dynamics were investigated to understand

Bismuth-based nanostructured photocatalysts for the remediation of antibiotics and organic dyes

• Akeem Adeyemi Oladipo and
• Faisal Suleiman Mustafa

Beilstein J. Nanotechnol. 2023, 14, 291–321, doi:10.3762/bjnano.14.26

• of the host material, enhancing charge carrier dynamics [20][146]. In contrast to undoped Bi2WO6, visible light-driven 3-D hierarchical Ag-doped Bi2WO6 nanoparticles showed improved photocatalytic performance by destroying 95% of tetracycline in only 70 min, according to Shen and co-workers [147

Spin dynamics in superconductor/ferromagnetic insulator hybrid structures with precessing magnetization

• Yaroslav V. Turkin and
• Nataliya Pugach

Beilstein J. Nanotechnol. 2023, 14, 233–239, doi:10.3762/bjnano.14.22

• Yaroslav V. Turkin Nataliya Pugach HSE University, Moscow 101000, Russia Vernadsky Crimean Federal University, Simferopol 295007 10.3762/bjnano.14.22 Abstract The main goal of the present work is the description of the dynamics of spin current and induced magnetization inside a superconducting

• interaction between the superconducting correlations and spin waves influences the dynamics of both superconducting and magnetic films. Interfacial exchange interaction between Cooper pairs and magnons results in a nonstationary induced magnetization and spin currents in the superconducting film and changes

• ][19] frameworks. However, the main subject of these works is the magnetic excitation spectrum in hybrid structures. Most of the works ignore the dynamics of nonuniform distributions of induced magnetization and spin current inside the superconducting film, which can be called the “dynamic inverse

A distributed active patch antenna model of a Josephson oscillator

• Vladimir M. Krasnov

Beilstein J. Nanotechnol. 2023, 14, 151–164, doi:10.3762/bjnano.14.16

• be almost 1000 times slower than c [32]. Because of that, the wavelength inside the JJ is much smaller than in free space, λ ≪ λ0. Therefore, a JJ corresponds to a patch antenna with an extraordinary large effective permittivity, = (c/c0)2. The dynamics of a JJ is described by a nonlinear perturbed

Frontiers of nanoelectronics: intrinsic Josephson effect and prospects of superconducting spintronics

• Anatolie S. Sidorenko,
• Horst Hahn and
• Vladimir Krasnov

Beilstein J. Nanotechnol. 2023, 14, 79–82, doi:10.3762/bjnano.14.9

• /ferromagnetic absorber with a temperature reduction of the electrons in the refrigerator junctions down to 25 mK in the idle regime without an optical power load [22]. - Implementation of Josephson junctions for the design of quantum computers by analyzing the dynamics of a single-junction superconducting

• magnetic proximity effect at a ferromagnetic–insulator–superconductor (FIS) interface was investigated through combined experimental and theoretical work [25]. Manifestations of nonlinear features in magnetic dynamics and current–voltage characteristics of the 0 Josephson junction in superconductor

Gap-directed chemical lift-off lithographic nanoarchitectonics for arbitrary sub-micrometer patterning

• Chang-Ming Wang,
• Hong-Sheng Chan,
• Chia-Li Liao,
• Che-Wei Chang and
• Wei-Ssu Liao

Beilstein J. Nanotechnol. 2023, 14, 34–44, doi:10.3762/bjnano.14.4

• captured with an epifluorescence microscope (Axio Imager. M2, Carl Zeiss microscopy, Jena, Germany) equipped with an X-Cite 120 LED (Lumen Dynamics Group, Inc., Mississauga, Canada) lamp. Excitation wavelength was set to 480 nm while emission of 535 nm was collected. Fluorescence images were analyzed with

The influence of structure and local structural defects on the magnetic properties of cobalt nanofilms

• Alexander Vakhrushev,
• Aleksey Fedotov,
• Olesya Severyukhina and
• Anatolie Sidorenko

Beilstein J. Nanotechnol. 2023, 14, 23–33, doi:10.3762/bjnano.14.3

• materials; molecular dynamics; nanocomposites; nanofilms; spintronics; Introduction The analysis of phase transitions and related critical phenomena in condensed media is a complex, time-consuming, and often a high-cost process from a technological point of view [1][2][3]. On the one hand, this is due to

• , simultaneous equations of classical molecular dynamics are used, which are supplemented by considering the spin vectors si for each atom. The motion equation for atoms and spins is written in the following form: where ri is the vector characterizing the position of the particle i; si,and sj are the spin

• magnetic properties based on the combined model of molecular dynamics and magnetization dynamics. The technique used includes simulations of atomic magnetic spins associated with lattice vibrations. The dynamics of these magnetic spins can be used to simulate a wide range of phenomena related to

Atmospheric water harvesting using functionalized carbon nanocones

• Fernanda R. Leivas and
• Marcia C. Barbosa

Beilstein J. Nanotechnol. 2023, 14, 1–10, doi:10.3762/bjnano.14.1

• occurs due to the presence of hydrophilic sites at the nanocone entrance. The functionalization, together with the high mobility of water inside nanostructures, leads to a fast water flow through the nanostructure. We show using molecular dynamics simulations that this device is able to collect water if

• molecular dynamics simulations the process of capturing and collecting water in a functionalized carbon nanocone. The process is analyzed in a system in which the larger diameter of the cone is in contact with a vapor reservoir and the smaller diameter is in contact with an initially empty reservoir. The

• ). Molecular dynamics simulations were performed using the LAMMPS [48] package using an NVT ensemble with a timestep of 0.1 fs. The TIP4P/2005 [49] water model was used since it provides a satisfactory description of self-diffusion coefficient [50], phase diagram, vapor–liquid equilibria [51][52], vapor

Observation of collective excitation of surface plasmon resonances in large Josephson junction arrays

• Roger Cattaneo,
• Mikhail A. Galin and
• Vladimir M. Krasnov

Beilstein J. Nanotechnol. 2022, 13, 1578–1588, doi:10.3762/bjnano.13.132

• , comparison with similar arrays without such lines [9][34] does not reveal any significant influence of these lines, implying that even for the linear array the electrodes are playing the dominant role in array dynamics. Results Measurements were performed in a closed-cycle 4He cryostat (sample in gas) with

Coherent amplification of radiation from two phase-locked Josephson junction arrays

• Mikhail A. Galin,
• Vladimir M. Krasnov,
• Ilya A. Shereshevsky,
• Nadezhda K. Vdovicheva and
• Vladislav V. Kurin

Beilstein J. Nanotechnol. 2022, 13, 1445–1457, doi:10.3762/bjnano.13.119

• synchronization inside each array. The latter effect removes the limit of two for the gain factor. Finally, for better understanding, we performed numerical simulations of the inner dynamics for two interacting arrays. Our simulations confirm that two arrays can be phase-locked by a common EM field. They also

• a complex phenomenon, which cannot be reduced to a simple constructive interference of two independent sources. For a better understanding of the phase locking dynamics, we perform numerical modelling. Figure 6a demonstrates the general view of the considered model for on-chip synchronization. It

• of the opposite long side. All lumped elements are connected by ideal conductors located at the edges of mesh. The gap between two arrays is 0.1 mm. The JJs are described by the RSJ model [20]. The corresponding equations of junction dynamics are solved self-consistently with Maxwell equations, which

Straight roads into nowhere – obvious and not-so-obvious biological models for ferrophobic surfaces

• Wilfried Konrad,
• Christoph Neinhuis and
• Anita Roth-Nebelsick

Beilstein J. Nanotechnol. 2022, 13, 1345–1360, doi:10.3762/bjnano.13.111

• structure, which can easily be described in terms of analytic functions. When a sheet of liquid iron flows over the tuyère surface, a complex interaction between the gas in the recesses and the liquid evolves. It is, of course, hopeless to try to describe the interaction dynamics in terms of analytic

Bending and punching characteristics of aluminum sheets using the quasi-continuum method

• Man-Ping Chang,
• Shang-Jui Lin and
• Te-Hua Fang

Beilstein J. Nanotechnol. 2022, 13, 1303–1315, doi:10.3762/bjnano.13.108

• , since it is very challenging to experimentally control every parameter in the nanoscale, the atomistic computational simulation methods are often used. The most commonly used simulation method is molecular dynamics (MD), which has been conducted to investigate many nanoscale processes [22][23]. Although

Studies of probe tip materials by atomic force microscopy: a review

• Ke Xu and
• Yuzhe Liu

Beilstein J. Nanotechnol. 2022, 13, 1256–1267, doi:10.3762/bjnano.13.104

• without compromising the carbon nanotubes' aspect ratio, strength and size. The mechanical response of these composite beams under bending is studied in molecular dynamics simulations and nanomanipulation experiments. The behavior of this system has been studied at both theoretical and experimental levels

• understanding interactions in various domains to study adhesion phenomena, particle-surface interactions, mechanical properties, suspensions, liquid dynamics, and boundary slips. Colloidal gold probe Colloidal gold particles [48][49] have the advantage of stable adsorption of proteins without significant

• adjustments are made to its cantilever dynamics, the calibration accuracy of CPs does not fluctuate when the additional mass of the ball is the same as the cantilever. In the type of large CPs, applying the homogeneity theorem for topless cantilever beams to Equation 1 can achieve accurate calibration. These

Nonlinear features of the superconductor–ferromagnet–superconductor φ₀ Josephson junction in the ferromagnetic resonance region

• Aliasghar Janalizadeh,
• Ilhom R. Rahmonov,
• Sara A. Abdelmoneim,
• Yury M. Shukrinov and
• Mohammad R. Kolahchi

Beilstein J. Nanotechnol. 2022, 13, 1155–1166, doi:10.3762/bjnano.13.97

• , 141980, Russia Moscow Institute of Physics and Technology, Dolgoprudny, 141700, Moscow Region, Russia Physics Department, Menofiya University, Faculty of Science, 32511, Shebin Elkom, Egypt 10.3762/bjnano.13.97 Abstract We demonstrate the manifestations of nonlinear features in magnetic dynamics and I–V

• characteristics of a φ0 Josephson junction in the ferromagnetic resonance region. We show that at small values of the system parameters damping, spin–orbit interaction, and Josephson-to-magnetic energy ratio, the magnetic dynamics is reduced to the dynamics of a scalar Duffing oscillator driven by the Josephson

• –voltage (I–V) characteristics by magnetic dynamics in the ferromagnet, in particular, to create a DC component in the superconducting current [6][7][8]. A remarkable manifestation of this coupling is the possibility to stimulate a magnetization reversal in the ferromagnetic layer by applying a current

Rapid fabrication of MgO@g-C₃N₄ heterojunctions for photocatalytic nitric oxide removal

• Minh-Thuan Pham,
• Duyen P. H. Tran,
• Xuan-Thanh Bui and
• Sheng-Jie You

Beilstein J. Nanotechnol. 2022, 13, 1141–1154, doi:10.3762/bjnano.13.96

• and urea and, subsequently, characterized. Charge transfer dynamics in the heterojunction and band structure were investigated to understand the effect of the heterojunction on the photocatalytic activity. Finally, the photocatalytic pathway of the MgO@g-C3N4 heterojunction was studied via trapping

Effects of focused electron beam irradiation parameters on direct nanostructure formation on Ag surfaces

• Jānis Sniķeris,
• Vjačeslavs Gerbreders,
• Andrejs Bulanovs and
• Ēriks Sļedevskis

Beilstein J. Nanotechnol. 2022, 13, 1004–1010, doi:10.3762/bjnano.13.87

• irradiation and the material of the surface. However, the effects on growth dynamics of numerous irradiation parameters, such as beam current or angle of incidence, have not yet been studied in detail. We explore the effects of focusing, angle of incidence, and current of the electron beam on the size and

• LiAlSi glasses [28] and TiO2 [29]. In one of our previous studies [30] we investigated the growth dynamics of nanodots on various metal surfaces (Al, Ag, Cu, Cr, and Mo) under focused EB irradiation in an SEM vacuum chamber. Similar to the previously discussed study, an influence of the surface material

Influence of water contamination on the sputtering of silicon with low-energy argon ions investigated by molecular dynamics simulations

• Grégoire R. N. Defoort-Levkov,
• Alan Bahm and
• Patrick Philipp

Beilstein J. Nanotechnol. 2022, 13, 986–1003, doi:10.3762/bjnano.13.86

• by molecular dynamics (MD) simulations how one of the most commonly found residual contaminations in vacuum chambers (i.e., water adsorbed on a silicon surface) influences sputtering by 100 eV argon ions. The incidence angle was changed from normal incidence to close to grazing incidence. For the

• ; molecular dynamics; silicon; simulations; water; Introduction Focused ion beams (FIB) play an increasingly important role in materials research areas such as nanoanalysis (e.g., secondary ion mass spectrometry (SIMS) [1][2][3] and sample preparation for transmission electron microscopy (TEM) [4], atom

• extreme cases. Nowadays, very little is known about the influence of contaminations on the amorphization process under ion irradiation. Thanks to molecular dynamics (MD) simulations, a wide range of materials properties and process parameters can be reproduced [27][28][29]. In this paper, we are using MD

Comparing the performance of single and multifrequency Kelvin probe force microscopy techniques in air and water

• Jason I. Kilpatrick,
• Emrullah Kargin and
• Brian J. Rodriguez

Beilstein J. Nanotechnol. 2022, 13, 922–943, doi:10.3762/bjnano.13.82

• resolution [13][15][16][17][18][19]. These advances have enabled investigations mapping light-induced surface potential dynamics [20], ferroelectric domains [19], individual quantum dots [21][22], and even submolecular charge distributions [23][24][25][26][27]. These applications demonstrate that KPFM is

Ultrafast signatures of magnetic inhomogeneity in Pd_1−xFe_x (x ≤ 0.08) epitaxial thin films

• Andrey V. Petrov,
• Sergey I. Nikitin,
• Lenar R. Tagirov,
• Amir I. Gumarov,
• Igor V. Yanilkin and
• Roman V. Yusupov

Beilstein J. Nanotechnol. 2022, 13, 836–844, doi:10.3762/bjnano.13.74

• magnetic inhomogeneities in thin films. Individual constituents can be characterized by specific relaxation components that can be used to detect magnetic inhomogeneities and track their evolution. In addition, the peculiarities of the magnetization dynamics in magnetically inhomogeneous systems themselves

• are of interest. In our recent work, using the example of a thin epitaxial film of Pd0.94Fe0.06, it was demonstrated [37] that the dynamics of the reflection coefficient and the angle of rotation of the polarization plane in magneto-optical Kerr effect (MOKE) measurements after a photoexcitation with

• angles were ≈2° and ≈18°. The relaxation of the electronic subsystem was monitored by the relative change in the reflection coefficient (∆R/R). Ultrafast dynamics of the magnetization was analyzed by the deviation of the angle of rotation of the polarization plane of the probing light from the

Modeling a multiple-chain emeraldine gas sensor for NH₃ and NO₂ detection

• Hana Sustkova and
• Jan Voves

Beilstein J. Nanotechnol. 2022, 13, 721–729, doi:10.3762/bjnano.13.64

• gradient approximated (GGA) Perdew–Burke–Ernzerhof (PBE) exchange–correlation functional was used. Guo et al. [5] investigated the graphene/polyaniline adsorption energy of NH3, CO, NO, and H2 using DFT and molecular dynamics computations. From this, graphene/PANI is highly sensitive to NH3 in comparison

• chosen fixed positions of ammonia and nitrogen dioxide molecules. We have computed the local energy minima through molecular dynamics, which results in the optimized position and orientation of the gas molecule. The spatial orientation of the gas molecules was estimated by these optimizations. Next, one

• as well. The I–V characteristics were computed for several molecule positions near the doped and near the undoped nitrogen atoms, see above. The molecule orientation was estimated through molecular dynamics optimization. The resistance from the linear part of the I–V characteristics was used to

Direct measurement of surface photovoltage by AC bias Kelvin probe force microscopy

• Masato Miyazaki,
• Yasuhiro Sugawara and
• Yan Jun Li

Beilstein J. Nanotechnol. 2022, 13, 712–720, doi:10.3762/bjnano.13.63

• . Indeed, there remains an issue that the modulation frequency has the constraint of a transfer function of cantilever dynamics and the bandwidth of the PLL. We believe that this issue will be solved by future work such as using a heterodyne detection scheme [65][66][67]. It is noted that AC-KPFM observes

• it would be useful to operate AC-KPFM with a heterodyne detection scheme [65][66][67] in order to reduce a photothermal effect on the cantilever dynamics [68][69] and measure the fast SPV phenomena. The AC-KPFM method is utilized not only for SPV measurements, but also for direct measurements of

Design and selection of peptides to block the SARS-CoV-2 receptor binding domain by molecular docking

• Kendra Ramirez-Acosta,
• Ivan A. Rosales-Fuerte,
• J. Eduardo Perez-Sanchez,
• Alfredo Nuñez-Rivera,
• Josue Juarez and
• Ruben D. Cadena-Nava

Beilstein J. Nanotechnol. 2022, 13, 699–711, doi:10.3762/bjnano.13.62

• variants of SARS-CoV-2. This research work will be focused on the molecular docking of peptides by molecular dynamics, in addition to an analysis of the possible interaction of these peptides with physiological proteins. This methodology could be extended to design peptides that are active against other

A superconducting adiabatic neuron in a quantum regime

• Marina V. Bastrakova,
• Dmitrii S. Pashin,
• Dmitriy A. Rybin,
• Andrey E. Schegolev,
• Nikolay V. Klenov,
• Igor I. Soloviev,
• Anastasiya A. Gorchavkina and
• Arkady M. Satanin

Beilstein J. Nanotechnol. 2022, 13, 653–665, doi:10.3762/bjnano.13.57

• , Russia Federal State Unitary Enterprise All-Russia Research Institute of Automatics named after N.L. Dukhov, 101000 Moscow, Russia 10.3762/bjnano.13.57 Abstract We explore the dynamics of an adiabatic neural cell of a perceptron artificial neural network in a quantum regime. This mode of cell operation

• work, we account for this by considering the neuron cell operation in a quantum regime. We investigate the dynamics of this cell in search of conditions that provide the required sigmoid activation function (conversion of the input magnetic flux into the average output current), suitable for the

• the dynamics of the neuron. The range of the operating parameters for the proposed neuron circuit under the action of unipolar magnetic flux pulses is found. Finally, the influence of the dissipation on the features of the dynamic processes and characteristics of the cell is revealed. Methods Neuron

Fabrication and testing of polymer microneedles for transdermal drug delivery

• Vahid Ebrahiminejad,
• Zahra Faraji Rad,
• Philip D. Prewett and
• Graham J. Davies

Beilstein J. Nanotechnol. 2022, 13, 629–640, doi:10.3762/bjnano.13.55

• simulation model was performed using ANSYS (2020 R1, ANSYS, Canonsburg, Pennsylvania, USA) Explicit Dynamics. The skin was assumed to be comprised of three layers (1) stratum corneum, (2) dermis, and (3) hypodermis with 26 μm, 2 mm, and 1.1 mm thicknesses, respectively. An Ogden (first-order) model [32] was

• BD Ultra-Fine™ 4 mm Pen Needle on porcine back skin, along with (3) Explicit Dynamics simulation of single MN insertion on a three-layered skin model. The comparisons between the results found for insertion force and quasi-static buckling test showed sufficient margins of safety (SM ≫ 1), indicating

• recorded during insertion based on c) FEA Explicit Dynamics simulation, and d) in vitro experiment using a BD Ultra-Fine™ 4 mm Pen Needle on porcine skin. Confocal images of cryo-sectioned porcine back skin showing MN array penetration: a) control test without MNs or fluorescein solution, b) MN array patch

Comparative molecular dynamics simulations of thermal conductivities of aqueous and hydrocarbon nanofluids

• Adil Loya,
• Antash Najib,
• Fahad Aziz,
• Asif Khan,
• Guogang Ren and
• Kun Luo

Beilstein J. Nanotechnol. 2022, 13, 620–628, doi:10.3762/bjnano.13.54

• ., alkane) the thermal conductivity was increased three times (from 0.1 to 0.4 W·m−1·K−1). This approach to determine the thermal conductivity of metal oxide nanoparticles in aqueous and nonaqueous fluids using visual molecular dynamics and interactive autocorrelations demonstrate a great tool to quantify

• thermophysical properties of nanofluids using a simulation environment. Moreover, this comparison introduces data on aqueous and nonaqueous suspensions in one study. Keywords: alkanes; aqueous solutions; CuO; hydrocarbon solutions; molecular dynamics simulation; nanoparticles; thermal conductivity

• molecules [1]. The molecular dynamics (MD) simulation method is a tool that has been used to effectively predict nanofluid thermal properties with relative accuracy [38][39][40][41][42]. The method relies on computationally solving basic equations of Newton’s laws of motion for interacting particles at the