An isoxazole strategy for the synthesis of 4-oxo-1,4-dihydropyridine-3-carboxylates

• Timur O. Zanakhov,
• Ekaterina E. Galenko,
• Mikhail S. Novikov and
• Alexander F. Khlebnikov

Beilstein J. Org. Chem. 2022, 18, 738–745, doi:10.3762/bjoc.18.74

• due to their specific characteristics such as basicity, hydrogen bond forming ability, water solubility, and especially because of pyridine rings are bioisosteres of amines, amides, N-heterocyclic rings and benzene rings [1][2][3][4][5]. A special type of pyridine, the 4-pyridones, is also fairly well

Synthesis of a new water-soluble hexacarboxylated tribenzotriquinacene derivative and its competitive host–guest interaction for drug delivery

• Man-Ping Li,
• Nan Yang and
• Wen-Rong Xu

Beilstein J. Org. Chem. 2022, 18, 539–548, doi:10.3762/bjoc.18.56

• cancer treatment [1][2]. Many types of chemotherapeutic drugs have been commonly used in clinical practice, including doxorubicin (DOX) [3], chlorambucil [4], oxaliplatin [5], etc. However, the use of most chemotherapeutic agents is often challenged by their poor water solubility and non-selective

• acidification with hydrochloric acid gave the precursor hexakis(carboxylic acid) compound 3 in 85% yield in two steps. Finally, the desired hexacarboxylated TBTQ derivative TBTQ-CB6 was successfully obtained by reaction with ammonium hydroxide in 97% yield and found to have good water solubility. All

Site-selective reactions mediated by molecular containers

• Rui Wang and
• Yang Yu

Beilstein J. Org. Chem. 2022, 18, 309–324, doi:10.3762/bjoc.18.35

• water solubility, and, on the other hand, these kinds of water-soluble moieties could also be introduced into the structures of other hosts to help them gain some extent of water solubility. In aqueous solution, the molecular containers provide hydrophobic pockets capable of binding a wide range of

• anthracene and phthalimide guests with unusual and controllable site-selectivity mediated by organopalladium-coordinated hosts in water (Figure 1) [34]. The water-solubility of the coordinated host traced from its ionic form, and the aqueous reaction conformed with the concept of green chemistry. In previous

• reported the cyclodextrin-mediated site-selective ring-opening reductive reaction of epoxide 16 by sodium borohydride in aqueous solution (Figure 4b) [58]. The sugar-based hosts show good water solubility and can be used for driving organic reactions in water. In this case, the cyclodextrin host and the

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

• vulnerabilities. Limited water solubility, especially for purine rich sequences, was noted in early studies. To improve water solubility and decrease aggregation, typical PNA designs place a lysine at the C-terminus (Figure 1) introducing a second positive charge in addition to the charge at the N-terminus of PNA

• functionalities have been introduced in PNA to improve water solubility and better mimic DNA/RNA structure. One of the early studies was on chimeras of PNA and phosphono-PNA (Figure 5) that improved water solubility and in some cases resulted in stronger hybridization with complementary DNA and RNA [90]. The

Substituted nitrogen-bridged diazocines

• Pascal Lentes,
• Jeremy Rudtke,
• Thomas Griebenow and
• Rainer Herges

Beilstein J. Org. Chem. 2021, 17, 1503–1508, doi:10.3762/bjoc.17.107

• . Moreover, the photoconversion yield for the E→Z isomerization is quantitative (within the detection limit of UV and NMR spectroscopy). A high efficiency in switching the biological activity off is important to avoid side effects of residual concentrations of the active form [13]. Water solubility and high

Application of the Meerwein reaction of 1,4-benzoquinone to a metal-free synthesis of benzofuropyridine analogues

• Rashmi Singh,
• Tomas Horsten,
• Rashmi Prakash,
• Swapan Dey and
• Wim Dehaen

Beilstein J. Org. Chem. 2021, 17, 977–982, doi:10.3762/bjoc.17.79

• dibenzofuran have been less explored, although they may have significant bioactivity. Introducing nitrogen to the dibenzofuran system is expected to increase the water solubility and potential bioavailability due to enhanced hydrogen bonding. Figure 2 presents a few examples of azadibenzofuran molecules. One

Synthesis of 4-substituted azopyridine-functionalized Ni(II)-porphyrins as molecular spin switches

• Jannis Ludwig,
• Tobias Moje,
• Fynn Röhricht and
• Rainer Herges

Beilstein J. Org. Chem. 2020, 16, 2589–2597, doi:10.3762/bjoc.16.210

• are electron withdrawing (σ = 0.45), however, they are almost completely dissociated at neutral (physiological) pH. Carboxylate anion substituents are weakly electron donating and should improve both switching efficiency and water solubility. Results and Discussion Synthesis The record player

• efficiencies, particularly in water, we synthesized 5 new record player molecules (1f–j). Water forms H-bonds with the pyridine units, and reduces the coordination power to Ni2+ and thus decreases the efficiency of conversion to the paramagnetic (coordinated) state. Insufficient water solubility is another

Water-soluble host–guest complexes between fullerenes and a sugar-functionalized tribenzotriquinacene assembling to microspheres

• Si-Yuan Liu,
• Xin-Rui Wang,
• Man-Ping Li,
• Wen-Rong Xu and
• Dietmar Kuck

Beilstein J. Org. Chem. 2020, 16, 2551–2561, doi:10.3762/bjoc.16.207

• , and oxidative stability, has promoted the exploration of water-soluble fullerenes for biological use [34][35]. The extremely hydrophobic nature of fullerenes requires a strongly hydrophilic supramolecular host to achieve water solubility. It is important to note that host–guest research on TBTQ

• motif. In the work presented here, we have introduced sugar motifs that possess good water solubility and biocompatibility [36][37][38] at the six outer peripheral positions of the TBTQ framework to provide, for the first time, a water-soluble TBTQ-based host bearing an extended cavity. The complexation

The B & B approach: Ball-milling conjugation of dextran with phenylboronic acid (PBA)-functionalized BODIPY

• Patrizia Andreozzi,
• Lorenza Tamberi,
• Elisamaria Tasca,
• Gina Elena Giacomazzo,
• Marta Martinez,
• Mirko Severi,
• Marco Marradi,
• Stefano Cicchi,
• Sergio Moya,
• Giacomo Biagiotti and
• Barbara Richichi

Beilstein J. Org. Chem. 2020, 16, 2272–2281, doi:10.3762/bjoc.16.188

• highly miscible with water, but practically apolar. We assumed that pyrene, with a limited water solubility was completely located inside the dextran assemblies. If a significant fraction of pyrene was located in the water phase the spectra would resemble more the spectra in water or in nonconjugate

Photophysics and photochemistry of NIR absorbers derived from cyanines: key to new technologies based on chemistry 4.0

• Bernd Strehmel,
• Christian Schmitz,
• Ceren Kütahya,
• Yulian Pang,
• Anke Drewitz and
• Heinz Mustroph

Beilstein J. Org. Chem. 2020, 16, 415–444, doi:10.3762/bjoc.16.40

• their water solubility; that is the sulfobutyl group in the case of R1 or -SO3− in the case of either R2 or R3. Water soluble cyanines could feasibly favor physical drying of aqueous dispersions upon irradiation with a NIR-LED [70]. In addition, chemical drying of coatings requires the use of strong

• based on molecular modeling to understand relationships/interactions between absorbers and a surrounding matrix in the near future. The introduction of functional groups promoting the solubility in water results in absorbers exhibiting an appropriate water solubility, see Table 1 for structures. This

Light-controllable dithienylethene-modified cyclic peptides: photoswitching the in vivo toxicity in zebrafish embryos

• Sergii Afonin,
• Oleg Babii,
• Aline Reuter,
• Volker Middel,
• Masanari Takamiya,
• Uwe Strähle,
• Igor V. Komarov and
• Anne S. Ulrich

Beilstein J. Org. Chem. 2020, 16, 39–49, doi:10.3762/bjoc.16.6

• general trend, we observed a very low water solubility and tendency to aggregate. As can be seen from Figure 4, the toxicity against zebrafish embryos is higher than hemolysis for the majority of the ring-open isomers and for all ring-closed photoforms. This result suggests that the lysis of red blood

Synthesis and characterization of bis(4-amino-2-bromo-6-methoxy)azobenzene derivatives

• David Martínez-López,
• Amirhossein Babalhavaeji,
• Diego Sampedro and
• G. Andrew Woolley

Beilstein J. Org. Chem. 2019, 15, 3000–3008, doi:10.3762/bjoc.15.296

• substituent in an attempt to enhance water solubility. Late-stage functionalization of the ortho-position was carried out through a palladium(II)-catalyzed C–H activation, resulting in ortho-brominated azobenzenes [21]. Photochemical characterization Despite the morpholino substituent, compound 4 was found to

• half-life of 6.5 minutes was obtained at room temperature. To enhance the compounds’ water solubility, the morpholino substituents were replaced by piperazino groups because the secondary amino groups on the piperazino units were expected to have pKa values near 10 [22], and so should be protonated at

Design, synthesis and investigation of water-soluble hemi-indigo photoswitches for bioapplications

• Daria V. Berdnikova

Beilstein J. Org. Chem. 2019, 15, 2822–2829, doi:10.3762/bjoc.15.275

• that allowed to obtain an RNA-binding hemi-indigo derivative with photoswitchable fluorescent properties. Keywords: hemi-indigo; molecular switches; photochromism; photoswitching; visible light; water solubility; Introduction The application of organic photochromes in biological systems is fraught

• with their poor solubility and reduced photoswitching efficiency in aqueous medium. In many cases, approaches to improve the water solubility by chemical modification of the photochromic scaffolds are not straightforward because the introduction of substituents often interferes with the desired

• photoswitching of hemi-indigo in water. At the same time, the presence of a strong electron-donating dimethylamino group at this position is unfavorable for the photoswitching in water. It was also shown that the introduction of a second methoxy group in the 3-position of the phenyl ring improves the water

Plasma membrane imaging with a fluorescent benzothiadiazole derivative

• Pedro H. P. R. Carvalho,
• Jose R. Correa,
• Karen L. R. Paiva,
• Daniel F. S. Machado,
• Jackson D. Scholten and
• Brenno A. D. Neto

Beilstein J. Org. Chem. 2019, 15, 2644–2654, doi:10.3762/bjoc.15.257

• and by poor performances related to most of them. Therefore, many studies are still based on the use of WGA [16] (wheat germ agglutinin) or membrane proteins bearing fluorescent protein tags [11]. Water solubility is another issue that has to be considered. For the development of new fluorogenic dyes

• -soluble BTD fluorophore BTD-4APTEG was developed and applied as selective probe for bioimaging and stained plasma membranes selectively in the tested cells lines. The features envisaged for the synthesis of the structure proved to be capable of granting the dye water solubility, good photostability and

Reversible switching of arylazopyrazole within a metal–organic cage

• Anton I. Hanopolskyi,
• Soumen De,
• Michał J. Białek,
• Yael Diskin-Posner,
• Liat Avram,
• Moran Feller and
• Rafal Klajn

Beilstein J. Org. Chem. 2019, 15, 2398–2407, doi:10.3762/bjoc.15.232

• coordination. Owing to its high water solubility, the cage can solubilize the E isomer of arylazopyrazole, which, by itself, is not soluble in water. NMR spectroscopy and X-ray crystallography have independently demonstrated that each cage can encapsulate two molecules of E-arylazopyrazole. UV-induced

• complex of 2 and tetra-o-fluoroazobenzene yields a 1:1 mixture of Z2 and free Z-azobenzene, which is insoluble in water and precipitates from the solution [49]. The Z isomer of 1, however, has much higher water solubility and, following expulsion from the cage, can remain stable in solution. To verify

• reported azobenzene complex, the photoisomerization was not accompanied by precipitation of the released Z-arylazopyrazole, which has good water solubility. The expulsion of the Z isomer was confirmed by diffusion-ordered NMR spectroscopy, which also showed that the released and the encapsulated Z

Targeted photoswitchable imaging of intracellular glutathione by a photochromic glycosheet sensor

• Xianzhi Chai,
• Hai-Hao Han,
• Yi Zang,
• Jia Li,
• Xiao-Peng He,
• Junji Zhang and
• He Tian

Beilstein J. Org. Chem. 2019, 15, 2380–2389, doi:10.3762/bjoc.15.230

• precise outputs can be obtained for targeted analytes even at low concentrations. Though promising, common “photochromophore–fluorophore”-type sensors require elaborate designs to integrate multifunctionality (e.g., photoswitching, fluorescence sensing, targetability, water solubility, etc.) into one

• Glyco-DTE. More importantly, the β-ᴅ-galactoside cell-targeting moiety linked with Glyco-DTE forms a glyco-array on the MnO2 nanosheets that not only enhances the water solubility but also the cell targetability of the hybrid system towards HepG2 cell lines [25][26]. Therefore, by simply incorporating

Synthesis of a dihalogenated pyridinyl silicon rhodamine for mitochondrial imaging by a halogen dance rearrangement

• Jessica Matthias,
• Thines Kanagasundaram,
• Klaus Kopka and
• Carsten S. Kramer

Beilstein J. Org. Chem. 2019, 15, 2333–2343, doi:10.3762/bjoc.15.226

• rhodamines have been published. Dye 13 (Scheme 1, Table 1, entry 13) shows good water solubility, has a quantum yield of 0.12 and offers intrinsic targeting ability to lysosomes [35]. Pyridine silicon rhodamine 14 (Table 1, entry 14) has an improved quantum yield of 0.48 [32], presumably due to the

Fluorinated azobenzenes as supramolecular halogen-bonding building blocks

• Esther Nieland,
• Oliver Weingart and
• Bernd M. Schmidt

Beilstein J. Org. Chem. 2019, 15, 2013–2019, doi:10.3762/bjoc.15.197

• reaction and as organocatalysts in Diels–Alder reactions [27]. The group of Metrangolo also reported halogen bonding-promoted catalysis in water by exploiting a halogen bonding amino acid, which combines excellent donor properties with good water solubility [28], in addition to their seminal contributions

Reversible end-to-end assembly of selectively functionalized gold nanorods by light-responsive arylazopyrazole–cyclodextrin interaction

• Maximilian Niehues,
• Patricia Tegeder and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2019, 15, 1407–1415, doi:10.3762/bjoc.15.140

• 20-fold higher binding constant to β-CD (6.5 × 104 M−1) [32] than unmodified azobenzenes (2.5 × 103 M−1) [33]. Therefore, the competitive binding of CTAB to β-CD has been applied previously, e.g., in sensing applications [34] or to enhance the water solubility of a cyclodextrin polymer [35]. On

Complexation of a guanidinium-modified calixarene with diverse dyes and investigation of the corresponding photophysical response

• Yu-Ying Wang,
• Yong Kong,
• Zhe Zheng,
• Wen-Chao Geng,
• Zi-Yi Zhao,
• Hongwei Sun and
• Dong-Sheng Guo

Beilstein J. Org. Chem. 2019, 15, 1394–1406, doi:10.3762/bjoc.15.139

• most common high-performance fluorescent reagents routinely used in biological research for labeling and detection. It is characterized by high absorptivity, excellent brightness, a relatively good water solubility and possesses ACQ properties. In our previous work, we have reported the complexation

Self-assembly behaviors of perylene- and naphthalene-crown macrocycle conjugates in aqueous medium

• Xin Shen,
• Bo Li,
• Tiezheng Pan,
• Jianfeng Wu,
• Yangxin Wang,
• Jie Shang,
• Yan Ge,
• Lin Jin and
• Zhenhui Qi

Beilstein J. Org. Chem. 2019, 15, 1203–1209, doi:10.3762/bjoc.15.117

• ]. However, we recently found that benzo-21-crown-7 (B21C7) displays impressive high water solubility in comparison with other macrocyclic hosts [55]. Moreover, the conjugation of B21C7s to the well-known supramolecular BTA core leads to the observation of special topological effects on ion selectivity in

Insertion of [1.1.1]propellane into aromatic disulfides

• Robin M. Bär,
• Gregor Heinrich,
• Martin Nieger,
• Olaf Fuhr and
• Stefan Bräse

Beilstein J. Org. Chem. 2019, 15, 1172–1180, doi:10.3762/bjoc.15.114

• can lead to improved properties, e.g., increased water-solubility of drug candidates [2] or the electronical separation of a photoswitch and a chromophore [6]. Often used moieties for these kinds of applications are triptycenes, cubanes, bicyclo[2.2.2]octanes (BCOs) and bicyclo[1.1.1]pentanes (BCPs

Photochemical generation of the 2,2,6,6-tetramethylpiperidine-1-oxyl (TEMPO) radical from caged nitroxides by near-infrared two-photon irradiation and its cytocidal effect on lung cancer cells

• Ayato Yamada,
• Manabu Abe,
• Yoshinobu Nishimura,
• Shoji Ishizaka,
• Masashi Namba,
• Taku Nakashima,
• Kiyofumi Shimoji and
• Noboru Hattori

Beilstein J. Org. Chem. 2019, 15, 863–873, doi:10.3762/bjoc.15.84

• 2a induced cancer cell death in vitro, although no in vivo study was performed because of the low water solubility of 2a. At this point, we cannot rule out generate of ROS by photosensitization of the chromophore in the presence of O2 for the cytotoxicity. Conclusion In the present study, novel caged

Aqueous olefin metathesis: recent developments and applications

• Valerio Sabatino and
• Thomas R. Ward

Beilstein J. Org. Chem. 2019, 15, 445–468, doi:10.3762/bjoc.15.39

• significantly improve the water solubility and facilitate the removal of ruthenium residues from reaction mixtures [52][59]. The majority of such ruthenium complexes can easily be removed, especially for the metathesis of water-insoluble substrates, as demonstrated by Grela and co-workers for the RCM of

LCST phase behavior of benzo-21-crown-7 with different alkyl chains

• Yan Deng,
• Xing Li,
• Qiao Zhang,
• Zheng Luo,
• Chengyou Han and
• Shengyi Dong

Beilstein J. Org. Chem. 2019, 15, 437–444, doi:10.3762/bjoc.15.38

• between the amine groups and isocyanate units (yields, 44.6–76.5%), or between hydroxy groups and isocyanate units (yields, 57.4–84.9%), respectively. We also investigated the role of linkages in LCST behavior by the introduction of urea-based and carbamate-based linkers. The water solubility of the

• water solubility of 3a and 5a is 26.2 and 26.8 mg/mL, respectively. In addition, different alkyl chains exert a great effect on the water solubility. As shown in Figure 2a and Table S1 (Supporting Information File 1), it is quite obvious that the longer the alkyl chain is, the lower is the water

• solubility. When the alkyl chains contain seven CH2 units, the crown ethers become poorly soluble in water (the solubility is lower than 0.5 mg/mL for 3e), indicating the hydrophobic effect of long alkyl chains. The nature of the linker unit is also closely related to the water solubility: in general, crown