DABCO-promoted photocatalytic C–H functionalization of aldehydes

• Bruno Maia da Silva Santos,
• Mariana dos Santos Dupim,
• Cauê Paula de Souza,
• Thiago Messias Cardozo and
• Fernanda Gadini Finelli

Beilstein J. Org. Chem. 2021, 17, 2959–2967, doi:10.3762/bjoc.17.205

• , increased accessibility and with structural features that may lead to different reactivities and/or selectivities that are still to be explored. The different electrochemical behaviour of DABCO may also lead to alternative photocatalysts for its activation, such as organic dyes that may not be suitable for

Photophysical, photostability, and ROS generation properties of new trifluoromethylated quinoline-phenol Schiff bases

• Inaiá O. Rocha,
• Yuri G. Kappenberg,
• Wilian C. Rosa,
• Clarissa P. Frizzo,
• Nilo Zanatta,
• Marcos A. P. Martins,
• Isadora Tisoco,
• Bernardo A. Iglesias and
• Helio G. Bonacorso

Beilstein J. Org. Chem. 2021, 17, 2799–2811, doi:10.3762/bjoc.17.191

• attributed to a greater electronic conjugation provided by the imine function present in the molecules of the series 3. Photostability and singlet oxygen quantum yield (ΦΔ) assays In order to be efficient for applications in photobiology, organic dyes must be stable when subjected to light irradiation for

• here highlights their potential as dyes in photobiological applications. Conclusion In conclusion, we reported the synthesis and photophysical and antioxidant properties of a new series of ten novel Schiff bases 3. The scaffolds 3 could be synthesized by a simple condensation reaction between 6

Visible-light-mediated copper photocatalysis for organic syntheses

• Yajing Zhang,
• Qian Wang,
• Zongsheng Yan,
• Donglai Ma and
• Yuguang Zheng

Beilstein J. Org. Chem. 2021, 17, 2520–2542, doi:10.3762/bjoc.17.169

• organic dyes and metal complexes have been investigated [10][11][12]. Photoredox catalysts have been initially applied to organic reactions, but they are now used for complicated organic processes [13]. As photocatalysts, organic dyes have the advantages of having a low price and not containing metals

Efficient synthesis of polyfunctionalized carbazoles and pyrrolo[3,4-c]carbazoles via domino Diels–Alder reaction

• Ren-Jie Fang,
• Chen Yan,
• Jing Sun,
• Ying Han and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2021, 17, 2425–2432, doi:10.3762/bjoc.17.159

• hand, carbazole derivatives also have potential applications in optoelectronic materials, conducting polymers, and synthetic dyes [9][10][11]. Over the past decades, many efficient synthetic methodologies for functionalized carbazole derivatives have been successfully developed [12][13][14][15][16][17

Synthesis and antimicrobial activity of 1H-1,2,3-triazole and carboxylate analogues of metronidazole

• Satya Kumar Avula,
• Syed Raza Shah,
• Khdija Al-Hosni,
• Muhammad U. Anwar,
• Rene Csuk,
• Biswanath Das and
• Ahmed Al-Harrasi

Beilstein J. Org. Chem. 2021, 17, 2377–2384, doi:10.3762/bjoc.17.154

• materials, dyes, agrochemicals, photostabilizers, and corrosion inhibitors (copper alloys) [6]. Incorporation of the 1H-1,2,3-triazole moiety is well known to impact on the physical, chemical and biological potential properties of organic molecules. Due to this reason, many efforts have been exerted to

A visible-light-induced, metal-free bis-arylation of 2,5-dichlorobenzoquinone

• Pieterjan Winant and
• Wim Dehaen

Beilstein J. Org. Chem. 2021, 17, 2315–2320, doi:10.3762/bjoc.17.149

• , resulting in a multitude of applications in dyes [11], molecular electronics [12], and oxidants or ligands in organic chemistry [13][14]. This wide range of applications has long fueled an interest in exploring innovative ways of functionalizing quinones. However, arylation of (benzo)quinones has proven to

Towards new NIR dyes for free radical photopolymerization processes

• Haifaa Mokbel,
• Guillaume Noirbent,
• Didier Gigmes,
• Frédéric Dumur and
• Jacques Lalevée

Beilstein J. Org. Chem. 2021, 17, 2067–2076, doi:10.3762/bjoc.17.133

• and safe near-infrared (NIR) light is still the subject of intense research efforts but remains a huge challenge due to the associated low photon energy (wavelength from 0.78 to 2.5 µm). In this study, a series of 17 NIR dyes mainly based on a well-established cyanine scaffold is proposed. Remarkably

• abilities were found for some reported dyes when used in combination with iodonium salt and amine. Markedly, photothermal effects with a huge heater behavior were also observed for different NIR dye structures. Interestingly, the synthesis of interpenetrating polymer networks (IPNs, e.g., for the

• ][9]. NIR dyes, and more especially cyanine dyes, have been studied in NIR photosensitive systems [5][6][7][9][10][11][12][13][14][15]. The cyanine acts as a photosensitizer: it absorbs the light emitted in the NIR range and then acts with a combination of additives (oxidant agents and reducing agents

Asymmetric organocatalyzed synthesis of coumarin derivatives

• Natália M. Moreira,
• Lorena S. R. Martelli and
• Arlene G. Corrêa

Beilstein J. Org. Chem. 2021, 17, 1952–1980, doi:10.3762/bjoc.17.128

• acetylcholinesterase inhibitors [11][12][13], being LSPN223 the most potent compound (Figure 2). Furthermore, coumarin derivatives have been used as fluorescent probes, laser dyes, fluorescent chemosensors, light absorbers for solar cells, optical brighteners, and organic light emitting diodes (OLEDs) [14][15]. From a

Chemical approaches to discover the full potential of peptide nucleic acids in biomedical applications

• Nikita Brodyagin,
• Martins Katkevics,
• Venubabu Kotikam,
• Christopher A. Ryan and
• Eriks Rozners

Beilstein J. Org. Chem. 2021, 17, 1641–1688, doi:10.3762/bjoc.17.116

• , especially, red-shifted dyes with stronger fluorescence enhancement. Future design of novel PNA nucleobases that enhance the fluorescence signal while selectively hybridizing to natural nucleobases will be highly beneficial for in vitro and in vivo probes and diagnostics. Covalent PNA conjugates for delivery

Icilio Guareschi and his amazing “1897 reaction”

• Gian Cesare Tron,
• Alberto Minassi,
• Giovanni Sorba,
• Mara Fausone and
• Giovanni Appendino

Beilstein J. Org. Chem. 2021, 17, 1335–1351, doi:10.3762/bjoc.17.93

• differential scanning microscopy studies [64]. In connection with the work on the restauration of parchments, Guareschi developed an interest in the chemistry and technology of ancient inks and dyes, a topic he covered in some monumental monographs [65]. These, and the study on the history of chemistry, filled

• bromine in the presence of other halogens [67]. The test is based on the action of sulfitic leucobases of triphenylmethane dyes, such the decolorized fuchsine (Schiff reagent), which develops a deep violet color in the presence of traces of bromine. The reaction is very sensitive and selective for bromine

Photoinduced post-modification of graphitic carbon nitride-embedded hydrogels: synthesis of 'hydrophobic hydrogels' and pore substructuring

• Cansu Esen and
• Baris Kumru

Beilstein J. Org. Chem. 2021, 17, 1323–1334, doi:10.3762/bjoc.17.92

• on the adsorption and/or photodegradation of dyes. In general, these performances are reported on bulk g-CN materials, such as the on a self-standing ultra-long porous g-CN wires exhibiting outstanding RhB adsorption values by minimized solvent uptakes [46]. In our case, we focus on the RhB releasing

Synthesis of 10-O-aryl-substituted berberine derivatives by Chan–Evans–Lam coupling and investigation of their DNA-binding properties

• Peter Jonas Wickhorst,
• Mathilda Blachnik,
• Denisa Lagumdzija and
• Heiko Ihmels

Beilstein J. Org. Chem. 2021, 17, 991–1000, doi:10.3762/bjoc.17.81

• -aryl substituent to the berberine chromophore. The latter has been shown to operate also in resembling cationic, biaryl-type dyes [42][43]. Along the same lines, the low intrinsic emission quantum yield of the parent berberine (1a) has been suggested to result from an internal charge transfer (ICT

• monitoring of the temperature-dependent Förster resonance energy transfer (FRET) between the dyes [46]. The particular oligonucleotide sequences were chosen because they are known to be involved in biologically relevant processes, namely in the transcription regulation of myc (FmycT) [47][48], kit (FkitT

Synthesis of dibenzosuberenone-based novel polycyclic π-conjugated dihydropyridazines, pyridazines and pyrroles

• Ramazan Koçak and
• Arif Daştan

Beilstein J. Org. Chem. 2021, 17, 719–729, doi:10.3762/bjoc.17.61

• Ramazan Kocak Arif Dastan Department of Chemistry, Faculty of Sciences, Atatürk University, Erzurum, 25240, Turkey 10.3762/bjoc.17.61 Abstract The synthesis of novel polycyclic π-conjugated dihydropyridazines, pyridazines, and pyrroles was studied. Dihydropyridazine dyes were synthesized by

• classic organic dyestuffs. In that study, two highly fluorescent dibenzosuberenone-based dihydropyridazine dyes, 3a,b, were synthesized, and it was found that they can be used as a selective and sensitive sensor of fluoride anions (Scheme 1, Table 1) [55]. In another work, we reported the design

• fluorescent dyes 3a,b in detail. In the present study, the effects of functional groups with different conjugations on maximum absorbance (λmax, abs) and emission (λmax, ems), and wavelengths of dihydropyridazines 3c–f and 3k were investigated. Compounds 3c,d, with high conjugation, show the highest

[2 + 1] Cycloaddition reactions of fullerene C₆₀ based on diazo compounds

• Yuliya N. Biglova

Beilstein J. Org. Chem. 2021, 17, 630–670, doi:10.3762/bjoc.17.55

• in the use of these compounds. This is quite understandable: compounds with unique optical [2][3][4], electrophysical [5][6][7], mechanical [8][9][10], tribological [11][12][13], sorption [14][15][16][17], and biological properties [18][19][20], and even new dyes and catalysts [21][22][23][24][25

Synthesis of N-perfluoroalkyl-3,4-disubstituted pyrroles by rhodium-catalyzed transannulation of N-fluoroalkyl-1,2,3-triazoles with terminal alkynes

• Olga Bakhanovich,
• Viktor Khutorianskyi,
• Vladimir Motornov and
• Petr Beier

Beilstein J. Org. Chem. 2021, 17, 504–510, doi:10.3762/bjoc.17.44

• , agrochemicals, and functional materials (polymers, dyes, films, etc.) (Figure 1) [1][2][3][4]. Numerous methods exist for pyrrole synthesis, including the classical and industrially important condensation approaches, such as the Hantzsch, Huisgen, and Paal–Knorr processes [5]. However, the direct modification

¹⁹F NMR as a tool in chemical biology

• Diana Gimenez,
• Aoife Phelan,
• Cormac D. Murphy and
• Steven L. Cobb

Beilstein J. Org. Chem. 2021, 17, 293–318, doi:10.3762/bjoc.17.28

Molecular basis for protein–protein interactions

• Brandon Charles Seychell and
• Tobias Beck

Beilstein J. Org. Chem. 2021, 17, 1–10, doi:10.3762/bjoc.17.1

• determine the amino acid sequences at the PPIs site. Examples include protein painting [22] and chemical cross-linking [23], hydrogen–deuterium exchange mass spectrometry (HDXMS) [24], and fast photochemical oxidation of proteins [25]. In protein painting, small-molecular dyes are introduced to protein

• complexes where the dyes bind non-covalently to solvent-accessible surfaces. The protein–protein interface is not solvent-accessible, and thus the dye molecules do not bind to this region. The protein complex is first “painted” with the dyes and digested using proteases, such as trypsin. Different proteases

Changed reactivity of secondary hydroxy groups in C8-modified adenosine – lessons learned from silylation

• Jennifer Frommer and
• Sabine Müller

Beilstein J. Org. Chem. 2020, 16, 2854–2861, doi:10.3762/bjoc.16.234

• , functionalized phosphoramidite building blocks of all four nucleosides are highly desired. The number of commercially available RNA phosphoramidites that carry a suitable functionality for post-synthetic attachment of dyes, reporter groups or other conjugates is still rather limited. In particular, monomer

Synthesis and investigation of quadruplex-DNA-binding, 9-O-substituted berberine derivatives

• Jonas Becher,
• Daria V. Berdnikova,
• Heiko Ihmels and
• Christopher Stremmel

Beilstein J. Org. Chem. 2020, 16, 2795–2806, doi:10.3762/bjoc.16.230

• the two dyes. With this assay, the thermodynamic stabilization or destabilization of the quadruplex structure upon the complexation of the ligand is indicated by the shift of the melting temperature ΔTm. The analysis revealed an increasing stabilization of the quadruplex F21T toward dissociation with

Encrypting messages with artificial bacterial receptors

• Pragati Kishore Prasad,
• Naama Lahav-Mankovski,
• Leila Motiei and
• David Margulies

Beilstein J. Org. Chem. 2020, 16, 2749–2756, doi:10.3762/bjoc.16.225

• receptors is described. We show that the binding of DNA-based artificial receptors to E. coli expressing His-tagged outer membrane protein C (His-OmpC) induces a Förster resonance energy transfer (FRET) between the dyes, which results in the generation of a unique fluorescence fingerprint. Because the

• wavelengths, and the dyes that constitute them [4][5][6][24][25][26]. One parameter that was not yet applied to improve the level of defense provided by our systems is time. Unlike with some electronic security systems, in which the codes are constantly altered, or require that the user is identified within

• optical signatures owing to the FRET between the dyes (Figure 3A, step 1). In addition, we expected that a division of the labeled bacteria will increase the distance between the bacteria-bound receptors, which will lead to a decrease in the FRET efficiency and to a consequent change in the fluorescence

Optical detection of di- and triphosphate anions with mixed monolayer-protected gold nanoparticles containing zinc(II)–dipicolylamine complexes

• Lena Reinke,
• Julia Bartl,
• Marcus Koch and
• Stefan Kubik

Beilstein J. Org. Chem. 2020, 16, 2687–2700, doi:10.3762/bjoc.16.219

• contrast, sensing of the AuNPs described here is a direct consequence of the analyte-induced nanoparticle aggregation, not requiring additional dyes, metal ions, or further components, which could be an advantage for the sensing of a biologically relevant anions in an aqueous environment [35][36]. Results

Dawn of a new era in industrial photochemistry: the scale-up of micro- and mesostructured photoreactors

• Emine Kayahan,
• Mathias Jacobs,
• Leen Braeken,
• Leen C.J. Thomassen,
• Simon Kuhn,
• Tom van Gerven and
• M. Enis Leblebici

Beilstein J. Org. Chem. 2020, 16, 2484–2504, doi:10.3762/bjoc.16.202

• solvents used in the photoreactor. Several singlet-oxygen-mediated photooxidation reactions were performed in the aerosol photoreactor. Singlet oxygen is a highly reactive state of oxygen, which can be formed by some photosensitizers or dyes when an appropriate light source is used. The authors performed

Styryl-based new organic chromophores bearing free amino and azomethine groups: synthesis, photophysical, NLO, and thermal properties

• Anka Utama Putra,
• Deniz Çakmaz,
• Nurgül Seferoğlu,
• Alberto Barsella and
• Zeynel Seferoğlu

Beilstein J. Org. Chem. 2020, 16, 2282–2296, doi:10.3762/bjoc.16.189

• Optics and Nanophotonics, IPCMS, UMR CNRS, 7504, 67034 Strasbourg Cedex 2, France 10.3762/bjoc.16.189 Abstract Herein we report the synthesis and characterization of a new series of styryl-based push-pull dyes containing a free amino group and their Schiff base derivatives. The dyes include the

• dicyanomethylene group as an acceptor and different para-substituted alkylamines as donors. Morever as a proton-sensitive group a pyridin-2-yl substituent was attached to the para-position of the phenyl moiety in both series of compounds. The photophysical properties of the dyes were examined in various solvents

• solutions in DMSO. Therefore, they showed potential to be utilized as colorimetric and luminescence pH sensors. The second-order nonlinear optical (NLO) responses of the dyes were measured by the electric field-induced second harmonic (EFISH) generation method. The highest μβ values were obtained for the

Naphthalene diimide bis-guanidinio-carbonyl-pyrrole as a pH-switchable threading DNA intercalator

• Poulami Jana,
• Filip Šupljika,
• Carsten Schmuck and
• Ivo Piantanida

Beilstein J. Org. Chem. 2020, 16, 2201–2211, doi:10.3762/bjoc.16.185

• molecules were dyes used for the DNA/RNA labelling or even monitoring or influencing DNA/RNA function [3][4]. However, due to the complexity of DNA-coded or RNA-coded processes, also including epigenetics, there is permanent need for novel dyes, differing in selectivity, colour, or method of monitoring [5

• chiral properties of the DNA or RNA helical structures [12][13], could also take advantage of induced CD spectrum (ICD) in the visible spectrum range of small achiral dyes, which they show only upon binding to DNA/RNA [14]. Moreover, with recent advances in fluorescence emission-based polarisation

• -fluorescent at experimental conditions and addition. Since NDI dyes are known to emit fluorescence, we also tried fluorimetric titrations with the hope that the initially non-emissive compound 4 becomes fluorescent upon binding to DNA (for instance cyanine dyes and many other behave that way). However, we did

Photosensitized direct C–H fluorination and trifluoromethylation in organic synthesis

• Shahboz Yakubov and
• Joshua P. Barham

Beilstein J. Org. Chem. 2020, 16, 2151–2192, doi:10.3762/bjoc.16.183

• byproducts. It is inexpensive, sustainable (ideally not ruthenium or iridium complexes) and commercially available. Due to their comparatively high triplet energies and the long lifetime of their triplet states; organic dyes and various ruthenium and iridium complexes are well-suited photosensitizers [118