Heterogeneous photocatalysis in flow chemical reactors

• Christopher G. Thomson,
• Ai-Lan Lee and
• Filipe Vilela

Beilstein J. Org. Chem. 2020, 16, 1495–1549, doi:10.3762/bjoc.16.125

• (HER). The FSO-FS polymer displayed the highest rates of hydrogen evolution (170 μmol⋅h−1), significantly higher than its structural isomer FSO-FSz. The authors studied the charge transfer dynamics of the different polymers through temperature-dependent photoluminescence, photoelectrochemical

• complimentary functional group. As the immobilised photocatalyst is generally non-conjugated to the support, its photophysical properties are generally unaltered from the homogeneous equivalent, and the complex semiconductor charge dynamics are avoided. Alternatively, semiconductor supports can be used that can

Disposable cartridge concept for the on-demand synthesis of turbo Grignards, Knochel–Hauser amides, and magnesium alkoxides

• Mateo Berton,
• Kevin Sheehan,
• Andrea Adamo and
• D. Tyler McQuade

Beilstein J. Org. Chem. 2020, 16, 1343–1356, doi:10.3762/bjoc.16.115

• flow rate produced by propane released during the reaction, and thus affecting the fluid dynamics and the back-pressure control. The product purities, a quantitative iPrCl conversion, and the yields were confirmed by NMR (Section 5, Supporting Information File 1), demonstrating the ODR prototype

Highly selective Diels–Alder and Heck arylation reactions in a divergent synthesis of isoindolo- and pyrrolo-fused polycyclic indoles from 2-formylpyrrole

• Carlos H. Escalante,
• Eder I. Martínez-Mora,
• Carlos Espinoza-Hicks,
• Alejandro A. Camacho-Dávila,
• Fernando R. Ramos-Morales,
• Francisco Delgado and
• Joaquín Tamariz

Beilstein J. Org. Chem. 2020, 16, 1320–1334, doi:10.3762/bjoc.16.113

• stereoselective approaches of substrates and reagents or catalysts in a variety of processes. Examples include the substrate–enzyme recognition (the host–guest interaction) responsible for inducing pharmacological activity, the DNA-intercalation capable of generating biomolecular activity, molecular dynamics [63

[3 + 2] Cycloaddition with photogenerated azomethine ylides in β-cyclodextrin

• Margareta Sohora,
• Leo Mandić and
• Nikola Basarić

Beilstein J. Org. Chem. 2020, 16, 1296–1304, doi:10.3762/bjoc.16.110

• of the phthalimide, which changed from a singlet to a multiplet (Figure S1 in Supporting Information File 1). The spectral changes are in accordance with the formation of an inclusion complex 2@β-CD, with the dynamics for the complexation faster than the NMR time-scale (millisecond). Nonlinear

Development of fluorinated benzils and bisbenzils as room-temperature phosphorescent molecules

• Shigeyuki Yamada,
• Takuya Higashida,
• Yizhou Wang,
• Masato Morita,
• Takuya Hosokai,
• Kaveendra Maduwantha,
• Kaveenga Rasika Koswattage and
• Tsutomu Konno

Beilstein J. Org. Chem. 2020, 16, 1154–1162, doi:10.3762/bjoc.16.102

• being conducted to better understand the photophysical mechanisms of the excited-state dynamics of these benzil and bisbenzil derivatives. Conclusion In this article, we described the design and synthesis of benzil- or bisbenzil-based room-temperature phosphorescent molecules via a simple oxidation

• photophysical behavior of the benzils and bisbenzils through several PL measurements under N2 and O2 flow conditions probed the successful room-temperature phosphorescence of the compounds in toluene solution. A fuller understanding of the excited-state dynamics of these benzil and bisbenzil derivatives will

Towards the total synthesis of chondrochloren A: synthesis of the (Z)-enamide fragment

• Jan Geldsetzer and
• Markus Kalesse

Beilstein J. Org. Chem. 2020, 16, 670–673, doi:10.3762/bjoc.16.64

• of the molecule was elucidated by a combination of NMR, UV and IR spectroscopy and molecular dynamics calculations (MD, MM2) [12]. However, its (Z)-enamide motif and the polyoxygenated middle segment are synthetically challenging. Results and Discussion Synthesis of amide 3 Here we report our

Regioselectively α- and β-alkynylated BODIPY dyes via gold(I)-catalyzed direct C–H functionalization and their photophysical properties

• Takahide Shimada,
• Shigeki Mori,
• Masatoshi Ishida and
• Hiroyuki Furuta

Beilstein J. Org. Chem. 2020, 16, 587–595, doi:10.3762/bjoc.16.53

• 5a and 6a agreed with the fact that the photoexcited dynamics of β-substituted BODIPYs intend to the rapid decay with structural relaxation. Conclusion In summary, we have synthesized novel regioselectively alkynylated BODIPY derivatives via a gold(I)-catalyzed direct C–H functionalization with TIPS

Potent hemithioindigo-based antimitotics photocontrol the microtubule cytoskeleton in cellulo

• Alexander Sailer,
• Franziska Ermer,
• Yvonne Kraus,
• Rebekkah Bingham,
• Ferdinand H. Lutter,
• Julia Ahlfeld and
• Oliver Thorn-Seshold

Beilstein J. Org. Chem. 2020, 16, 125–134, doi:10.3762/bjoc.16.14

• bioactive one, without the possibility of sign inversion by substituent shifts. To overcome this conceptual limitation, we recently reported on the first use of hemithioindigos (HTIs) as photoswitchable pharmacophores for optical control of tubulin dynamics in vitro (cell-free) and MT-dependent processes in

• cells, focusing on the active analogues HITub-4 and HITub-2 in comparison with inactive HITub-5 as a control (Figure 5). By reducing tubulin polymerisation dynamics, CDI treatment should first disorganise and then depolymerise the cellular MT network. We performed immunofluorescence staining of the MT

• disruption. Lastly, to substantiate the causative link between the observations on MT disruption and cellular toxicity, we examined the impacts of HITub-4 on the cell cycle. Tubulin-binding agents whose major cellular mechanism of toxic action is the disruption of MT dynamics or structure should cause cell

Photocontrolled DNA minor groove interactions of imidazole/pyrrole polyamides

• Sabrina Müller,
• Jannik Paulus,
• Jochen Mattay,
• Heiko Ihmels,
• Veronica I. Dodero and
• Norbert Sewald

Beilstein J. Org. Chem. 2020, 16, 60–70, doi:10.3762/bjoc.16.8

• ]. According to molecular dynamics calculations, the 3,3'-substituted azobenzenes are more suitable as photoswitchable building blocks to induce a hairpin motif than the 4,4'-substituted correlates [35]. For 3,3'-substituted azobenzenes, the Z-form is expected to display higher thermal stability than for the

Acid-catalyzed rearrangements in arenes: interconversions in the quaterphenyl series

• Sarah L. Skraba-Joiner,
• Carter J. Holt and
• Richard P. Johnson

Beilstein J. Org. Chem. 2019, 15, 2655–2663, doi:10.3762/bjoc.15.258

• substitution to yield the product [9]. Of course challenges to this simple mechanism exist [10][11][12][13][14][15], including the recent proposal of a one-step process [16]. Reaction dynamics of electrophile–arene π complexes may also play a role in site selectivity [17]. It is less commonly known that

Probing of local polarity in poly(methyl methacrylate) with the charge transfer transition in Nile red

• Aydan Yadigarli,
• Qimeng Song,
• Sergey I. Druzhinin and
• Holger Schönherr

Beilstein J. Org. Chem. 2019, 15, 2552–2562, doi:10.3762/bjoc.15.248

• -controlled drug delivery systems [4][6][7][8][9][10], as well as dynamics of polymers at interfaces [11]. To be able to understand local properties of polymers, in particular in nanoenvironments of polymeric vesicles (polymersomes), comprising a hydrophilic corona and a hydrophobic wall [1][12], or in

• to −170 °C, and Tδ = −180 °C [28][31]. In PMMA, the dynamics of the ester group (β-relaxation) can furthermore be coupled with the α-relaxation [29]. Results and Discussion For the development of a quantitative understanding of the polar probe NR in various nanoenvironments it is imperative to obtain

• and S5, Supporting Information File 1). These facts and the blue shifted fluorescence of NR in PMMA in comparison to mentioned above solutions (Figure 5) demonstrate that the local polarity in PMMA and/or its dynamics are different than in similar liquid solutions. The fluorescence maxima of NR at λe

Ultrafast processes triggered by one- and two-photon excitation of a photochromic and luminescent hydrazone

• Alessandro Iagatti,
• Baihao Shao,
• Alberto Credi,
• Barbara Ventura,
• Ivan Aprahamian and
• Mariangela Di Donato

Beilstein J. Org. Chem. 2019, 15, 2438–2446, doi:10.3762/bjoc.15.236

• – Istituto Nazionale di Ottica, Largo Enrico Fermi 6, 50125 Firenze, Italy 10.3762/bjoc.15.236 Abstract In this work we apply a combination of steady state and time resolved luminescence and absorption spectroscopies to investigate the excited-state dynamics of a recently developed molecular photoswitch

Excited state dynamics for visible-light sensitization of a photochromic benzil-subsituted phenoxyl-imidazolyl radical complex

• Yoichi Kobayashi,
• Yukie Mamiya,
• Katsuya Mutoh,
• Hikaru Sotome,
• Masafumi Koga,
• Hiroshi Miyasaka and
• Jiro Abe

Beilstein J. Org. Chem. 2019, 15, 2369–2379, doi:10.3762/bjoc.15.229

• sensitization of PIC expands the versatility of the rate-tunable photoswitches of PIC systems. In this study, we synthesized a novel PIC derivative conjugated with a visible-light photosensitizer (Benzil-PIC, Scheme 1) and investigated the excited state dynamics. We used a benzil framework as a photosensitizer

• difference in the photochromic properties between two isomers of Benzil-PIC, we measured the absorption spectra and nanosecond-to-microsecond transient absorption dynamics of isomer A in benzene upon repeated irradiation of 355 nm nanosecond laser pulses (355 nm, 7 mJ pulse−1, Figure S8a, Supporting

• (Figure S9, Supporting Information File 1). Figure S8b (Supporting Information File 1) shows the nanosecond-to-microsecond transient absorption dynamics of isomer A probed at 650 nm under repeated irradiation with the 355 nm nanosecond laser pulses at 298 K. While the transient absorption dynamics of

Perspective isomorphs – a new classification of molecular structures based on artistic and chemical concepts

• Jannis Neumann,
• Ansgar Schnurr and
• Hermann A. Wegner

Beilstein J. Org. Chem. 2019, 15, 2319–2326, doi:10.3762/bjoc.15.224

• recognizable and comprehensible within the framework of the specifications. The focus of the graphic interpretation of Kern was on the movement and dynamics within the atom (Figure 4, right). Borchers emphasized more the filigree, almost substance-less form of atoms Figure 4, left). Flügge interpreted the

1,2,3-Triazolium macrocycles in supramolecular chemistry

• Mastaneh Safarnejad Shad,
• Pulikkal Veettil Santhini and
• Wim Dehaen

Beilstein J. Org. Chem. 2019, 15, 2142–2155, doi:10.3762/bjoc.15.211

• concentration (10−5 mol/L) in a competitive aqueous–organic CHCl3/CH3OH/H2O mixture (45:45:10, v/v/v). Fluorescence spectroscopy measurements supported by molecular dynamics simulation data have revealed that the smaller macrocyclic rings move from the core-substituted PDI motif to the two 1,2,3-triazolium

• also determined the dissociation constant pKa of this acid−base switchable MIM system by an indicator method which could make a quantitative and precise estimation of its dynamics with environmental acidity change. By combining NMR spectroscopic data and quantum chemistry calculations, a motion

Naphthalene diimides with improved solubility for visible light photoredox catalysis

• Barbara Reiß and
• Hans-Achim Wagenknecht

Beilstein J. Org. Chem. 2019, 15, 2043–2051, doi:10.3762/bjoc.15.201

• but also by their photophysical dynamics. To the best of our knowledge this is the first report on the usage of cNDIs as photoredox catalysts. The irradiation by visible light from LEDs as energy-saving light sources together with the use of an organic dye instead of a transition metal complex as

Archangelolide: A sesquiterpene lactone with immunobiological potential from Laserpitium archangelica

• Silvie Rimpelová,
• Michal Jurášek,
• Lucie Peterková,
• Jiří Bejček,
• Vojtěch Spiwok,
• Miloš Majdl,
• Michal Jirásko,
• Miloš Buděšínský,
• Juraj Harmatha,
• Eva Kmoníčková,
• Pavel Drašar and
• Tomáš Ruml

Beilstein J. Org. Chem. 2019, 15, 1933–1944, doi:10.3762/bjoc.15.189

• . Interestingly, we found that neither archangelolide nor its dansyl conjugate did exhibit cytotoxic effects in contrast to the structurally closely related counterparts trilobolide and thapsigargin. We explain this observation by a molecular dynamics simulation, in which, in contrast to trilobolide

• that this SL does not act as SERCA inhibitor. Therefore, we proceeded to confirm this hypothesis by a molecular dynamics simulation study. Molecular dynamics simulation of compounds 1 and 2 with SERCA The binding cavity for thapsigargin and compound 2 in the SERCA protein lies in the transmembrane

• of 10.309 × 10.111 × 15.063 nm3 with periodical boundary conditions and centered. For simulations of energy minimization and molecular dynamics, Gromacs-4.5.5 software was used. The first part of the simulations occurred in vacuum, the other then in water. In order to keep the solution neutral, 24

Complexation of chiral amines by resorcin[4]arene sulfonic acids in polar media – circular dichroism and diffusion studies of chirality transfer and solvent dependence

• Bartosz Setner and
• Agnieszka Szumna

Beilstein J. Org. Chem. 2019, 15, 1913–1924, doi:10.3762/bjoc.15.187

• dynamics and suggest formation of a well-defined structure. Additional proof of chirality transfer came from analyzing the 1H NMR spectra of 1 and LysOMe possessing different chirality (ʟ-, ᴅ/ʟ-, mixture of ʟ- and ᴅ/ʟ-, ᴅ-). No diastereotopic splitting was observed for [1(ᴅ/ʟ-LysOMe)2]MeOH and only minor

Water inside β-cyclodextrin cavity: amount, stability and mechanism of binding

• Stiliyana Pereva,
• Valya Nikolova,
• Silvia Angelova,
• Tony Spassov and
• Todor Dudev

Beilstein J. Org. Chem. 2019, 15, 1592–1600, doi:10.3762/bjoc.15.163

• disordered and mobile, and that the OH groups of the host β-CD may rotate [17]. Studies with molecular dynamics simulations have found only four water molecules inside the host β-CD cavity [18]. The energetics of the CD hydration/dehydration have been investigated as well. Experimental studies have been able

• details Different molecular modeling methods (quantum mechanics (QM), molecular dynamics (MD), docking and quantitative structure activity relationships (QSARs)) can be applied in studying the structure, dynamics, and energetics of the host CD systems. However, the results from different modeling (or

Synthesis and conformational preferences of short analogues of antifreeze glycopeptides (AFGP)

• Małgorzata Urbańczyk,
• Michał Jewgiński,
• Joanna Krzciuk-Gula,
• Jerzy Góra,
• Rafał Latajka and
• Norbert Sewald

Beilstein J. Org. Chem. 2019, 15, 1581–1591, doi:10.3762/bjoc.15.162

• into the ice lattice [12], others investigated the adsorption process on different surfaces via atomic force microscopy [10][13][14]. The antifreeze activity has been correlated with long-range perturbation of hydration dynamics [15]. Latest molecular dynamics simulations suggest that AFGP reversibly

Transient and intermediate carbocations in ruthenium tetroxide oxidation of saturated rings

• Manuel Pedrón,
• Laura Legnani,
• Maria-Assunta Chiacchio,
• Pierluigi Caramella,
• Tomás Tejero and
• Pedro Merino

Beilstein J. Org. Chem. 2019, 15, 1552–1562, doi:10.3762/bjoc.15.158

• can lead to different products in a ratio that depends on reaction dynamics [31][32][33]. The study of molecular dynamics trajectories has allowed characterization of ambimodal transition states in reactions involving carbocations [34][35]. We have demonstrated computationally the presence of

Synthesis and biological evaluation of truncated derivatives of abyssomicin C as antibacterial agents

• Leticia Monjas,
• Peter Fodran,
• Johanna Kollback,
• Carlo Cassani,
• Thomas Olsson,
• Maja Genheden,
• D. G. Joakim Larsson and
• Carl-Johan Wallentin

Beilstein J. Org. Chem. 2019, 15, 1468–1474, doi:10.3762/bjoc.15.147

• docking of known and proposed ligands. The crystal structure contains a tryptophan molecule in the active site. Restrained molecular dynamics [20][21] was employed to position the active site cysteine (Cys-263) in a position that would allow covalent binding of the ligands in the active site. The

Synthesis of dipolar molecular rotors as linkers for metal-organic frameworks

• Sebastian Hamer,
• Fynn Röhricht,
• Marius Jakoby,
• Ian A. Howard,
• Xianghui Zhang,
• Christian Näther and
• Rainer Herges

Beilstein J. Org. Chem. 2019, 15, 1331–1338, doi:10.3762/bjoc.15.132

• of rotor dynamics and dipole interactions in crystals by Price [28]. The predicted dipole moment of 1 with 2.6 D is small, but the molecule should be suitable for MOF preparation because the structurally similar parent compound 1,4-benzenedipropynoic acid has been successfully used for MOF synthesis

Host–guest interactions between p-sulfonatocalix[4]arene and p-sulfonatothiacalix[4]arene and group IA, IIA and f-block metal cations: a DFT/SMD study

• Valya K. Nikolova,
• Cristina V. Kirkova,
• Silvia E. Angelova and
• Todor M. Dudev

Beilstein J. Org. Chem. 2019, 15, 1321–1330, doi:10.3762/bjoc.15.131

• anchoring points for the positively charged guests. Cation–π interactions between the monoatomic cations and p-sulfonatocalix[4]arene in water are supposed (but not proven) to take part in the inclusion complex formation [31]. Mendes et al. have carried out molecular dynamics (MD) simulations of association

Understanding the unexpected effect of frequency on the kinetics of a covalent reaction under ball-milling conditions

• Ana M. Belenguer,
• Adam A. L. Michalchuk,
• Giulio I. Lampronti and
• Jeremy K. M. Sanders

Beilstein J. Org. Chem. 2019, 15, 1226–1235, doi:10.3762/bjoc.15.120

• various kinetic treatments, an understanding of mechanochemical reaction dynamics remains largely elusive. While mechanochemical kinetics must obey the general principles of reactivity (collision, energy gain and relaxation), there remains a poorly understood, complex interplay between physical and