One-step route to tricyclic fused 1,2,3,4-tetrahydroisoquinoline systems via the Castagnoli–Cushman protocol

• Aleksandar Pashev,
• Nikola Burdzhiev and
• Elena Stanoeva

Beilstein J. Org. Chem. 2020, 16, 1456–1464, doi:10.3762/bjoc.16.121

• and the exocyclic C–C double bond. The geometry of the nitrogen atom is also planar most likely because of conjugation with the exocyclic C–C double bond and the C=O groups. The nitrogen planarity is probably also caused by a hydrogen bond between the NH group and the neighboring carbonyl oxygen atom

Synthesis, antiinflammatory activity, and molecular docking studies of bisphosphonic esters as potential MMP-8 and MMP-9 inhibitors

• Abimelek Cortes-Pacheco,
• María Adelina Jiménez-Arellanes,
• Francisco José Palacios-Can,
• José Antonio Valcarcel-Gamiño,
• Rodrigo Said Razo-Hernández,
• María del Carmen Juárez-Vázquez,
• Adolfo López-Torres and
• Oscar Abelardo Ramírez-Marroquín

Beilstein J. Org. Chem. 2020, 16, 1277–1287, doi:10.3762/bjoc.16.108

• small molecular volume increases the pharmacokinetic abilities of the compounds. In addition, 3 and 4 have a greater dipole moment compared to 5 and 6. The hydrogen-bond formation and the noncovalent interactions are influenced by the dipole moment. This means that an increased dipole moment can improve

• distance from the oxygen atom to the amide hydrogen atom (or a 3.09 Å O–N distance, Figure 4a). Compound 4 only displayed one hydrogen bond of the double bonded carbonyl oxygen atom to an amide hydrogen atom located between Asn218 and Tyr219. This interaction was regarded as weak, with an energy of −0.47

• kcal/mol and a 3.51 Å O–N distance (Figure 4b). Also, for compound 5, only one hydrogen bond interaction was seen. Indeed, the oxygen atom double bonded to the phosphorus atom of the phosphonate group was strongly bonded to an amide hydrogen atom localized between Ile159 and Leu160, with a 3.08 Å O–N

Aldehydes as powerful initiators for photochemical transformations

• Maria A. Theodoropoulou,
• Nikolaos F. Nikitas and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2020, 16, 833–857, doi:10.3762/bjoc.16.76

• , proved to be completely inactive as the photosensitizer. Also, no reaction was observed when salicylaldehyde (68) was employed as a photosensitizer, despite of a triplet state energy of ≈70 kcal/mol, most probably due to an internal hydrogen bond (Scheme 16). As mentioned before, in the section on the

• photosensitizers. Salicylaldehyde (68) forms an internal hydrogen bond. Olefin isomerization via energy transfer from a carbonyl compound. Mechanistic pathways for the Paterno–Büchi reaction. Isomeric oxetanes formed after photochemical addition of aryl aldehydes to 2-butenes. Rotation of the C3–C4 bond of the

Reaction of indoles with aromatic fluoromethyl ketones: an efficient synthesis of trifluoromethyl(indolyl)phenylmethanols using K₂CO₃/n-Bu₄PBr in water

• Thanigaimalai Pillaiyar,
• Masoud Sedaghati and
• Gregor Schnakenburg

Beilstein J. Org. Chem. 2020, 16, 778–790, doi:10.3762/bjoc.16.71

• makes a hydrogen bond interaction with the NH of the 5-methoxyindole (1a) and form the adduct B. This interaction assists 1a reacting with an electrophilic ketone (2a) to form the intermediate D via C–C bond formation (C). Re-aromatization of D generates E, which then protonates to form the desired

Exploring the scope of DBU-promoted amidations of 7-methoxycarbonylpterin

• Anna R. Bockman and
• Jeffrey M. Pruet

Beilstein J. Org. Chem. 2020, 16, 509–514, doi:10.3762/bjoc.16.46

• modifications to the pteridine core which disrupt the hydrogen-bond assembly, such as benzylation of the lactam oxygen or conversion of the exocyclic amine to the pivalic amide [12][13]. The installation and subsequent removal of these groups naturally affects the overall yield and time necessary to generate

Recent advances in photocatalyzed reactions using well-defined copper(I) complexes

• Mingbing Zhong,
• Xavier Pannecoucke,
• Philippe Jubault and
• Thomas Poisson

Beilstein J. Org. Chem. 2020, 16, 451–481, doi:10.3762/bjoc.16.42

• suggested to explain the reaction pathway: After irradiation, the copper catalyst, in an excited state, is quenched by the HEH, as demonstrated by a quenching experiment. Then, the reduced catalyst is involved in a hydrogen bond interaction with the carbonyl derivative, attributed to the acidic proton

p-Pyridinyl oxime carbamates: synthesis, DNA binding, DNA photocleaving activity and theoretical photodegradation studies

• Panagiotis S. Gritzapis,
• Panayiotis C. Varras,
• Nikolaos-Panagiotis Andreou,
• Katerina R. Katsani,
• Konstantinos Dafnopoulos,
• George Psomas,
• Zisis V. Peitsinis,
• Alexandros E. Koumbis and
• Konstantina C. Fylaktakidou

Beilstein J. Org. Chem. 2020, 16, 337–350, doi:10.3762/bjoc.16.33

• compounds 25–27 were calculated using DFT computational methods with discrete solute–solvent hydrogen bond interactions [66] (see optimized structures in Supporting Information File 1). Geometry optimizations were calculated at the DFT (B3PW91) level, using the 6-31G(d) basis set. The predicted 1H chemical

Ultrasonic-assisted unusual four-component synthesis of 7-azolylamino-4,5,6,7-tetrahydroazolo[1,5-a]pyrimidines

• Yana I. Sakhno,
• Maryna V. Murlykina,
• Oleksandr I. Zbruyev,
• Anton V. Kozyryev,
• Svetlana V. Shishkina,
• Dmytro Sysoiev,
• Vladimir I. Musatov,
• Sergey M. Desenko and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2020, 16, 281–289, doi:10.3762/bjoc.16.27

• , molecules 4g formed centrosymmetric dimers due to the N1–H···N4 intermolecular hydrogen bonds (1 x, 1 y, 2 z; H···N 2.22 Å, N–H···N 164°). The dimers were bound by a N6–H···O1 intermolecular hydrogen bond (x 1, y, z; H···O 2.16 Å, N–H···O 162°), forming chains along the [100] crystallographic direction

Synthesis of 4-(2-fluorophenyl)-7-methoxycoumarin: experimental and computational evidence for intramolecular and intermolecular C–F···H–C bonds

• Vuyisa Mzozoyana,
• Fanie R. van Heerden and
• Craig Grimmer

Beilstein J. Org. Chem. 2020, 16, 190–199, doi:10.3762/bjoc.16.22

• : DFT; F···H hydrogen bond; fluorinated phenylcoumarin; Pechmann reaction; through-space coupling; Introduction Coumarins constitute one of the big classes of naturally occurring compounds. The first coumarin was isolated from the tonka bean (Dipteryx odorata) in 1820 and, to date, more than 1300

• activity of a molecule. Oxygen and nitrogen have been proven to be good hydrogen-bond acceptors which form strong intermolecular and intramolecular hydrogen bonds, however, fluorine is still denied hydrogen-bond acceptor status by some scientists. There is evidence of the existence of C–F···H interaction

• interaction was observed, although the conclusions of the two groups were different – O’Hagan et al. concluded that fluorine is not a good hydrogen-bond acceptor, whereas Desiraju et al. concluded that the interaction has genuine hydrogen-bond character [24][33][34][35][36]. The C–F···H–C interaction is

The use of isoxazoline and isoxazole scaffolding in the design of novel thiourea and amide liquid-crystalline compounds

• Itamar L. Gonçalves,
• Rafaela R. da Rosa,
• Vera L. Eifler-Lima and
• Aloir A. Merlo

Beilstein J. Org. Chem. 2020, 16, 175–184, doi:10.3762/bjoc.16.20

• ability to establish intra- and intermolecular hydrogen bonds [11]. In addition to π–π, dipole–dipole and van der Waals interactions, hydrogen bond interactions are involved in gel formation through self-aggregation of the small gelator molecules. In recent years, there has been increased interest in the

The interaction between cucurbit[8]uril and baicalein and the effect on baicalein properties

• Xiaodong Zhang,
• Jun Xie,
• Zhiling Xu,
• Zhu Tao and
• Qianjun Zhang

Beilstein J. Org. Chem. 2020, 16, 71–77, doi:10.3762/bjoc.16.9

• ] easily. Because the hydroxy group on the carboxylic acid of the baicalin formed a hydrogen bond with the oxygen atoms of Q[8] at the portal, cycle C of baicalin was pushed into the cavity of Q[8]. Therefore, the inclusion model of cucurbit[8] with flavonoid compounds was determined by the structure of

SnCl₄-catalyzed solvent-free acetolysis of 2,7-anhydrosialic acid derivatives

• Kesatebrhan Haile Asressu and
• Cheng-Chung Wang

Beilstein J. Org. Chem. 2019, 15, 2990–2999, doi:10.3762/bjoc.15.295

• compound 12. Due to the absence of a hydrogen bond, azido-protected glycal 13 could be used as acceptor for reactions at its OH-4 and OH-8 group [36][37]. Moreover, it was used as sialyl donor in α-selective glycosylation reactions [35]. Next, acetolysis of 2,7-anhydro derivative 6 was examined with SnCl4

Regioselectivity of glycosylation reactions of galactose acceptors: an experimental and theoretical study

• Enrique A. Del Vigo,
• Carlos A. Stortz and
• Carla Marino

Beilstein J. Org. Chem. 2019, 15, 2982–2989, doi:10.3762/bjoc.15.294

• in α-anomers could be associated with the lower capacity of the O-5 atom to establish hydrogen bond interactions due to the anomeric effect [34]. For donor 4, the regioselectivity observed for 1α, 1β, and 2α was lower than that observed for 3, but for 2β, the only product detected was the 1→4

• could be ascribed to the greater basicity of the O-ring of the β-anomers [34], which results in a stronger hydrogen bond OH-4⋅⋅⋅O-5. Although stronger interactions were observed for some of the conformers (Table S1, Supporting Information File 1), they corresponded to the less stable conformers

Why do thioureas and squaramides slow down the Ireland–Claisen rearrangement?

• Dominika Krištofíková,
• Juraj Filo,
• Mária Mečiarová and
• Radovan Šebesta

Beilstein J. Org. Chem. 2019, 15, 2948–2957, doi:10.3762/bjoc.15.290

• Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia 10.3762/bjoc.15.290 Abstract A range of chiral hydrogen-bond-donating organocatalysts was tested in the Ireland–Claisen rearrangement of silyl ketene acetals. None of these organocatalysts was able to impart any enantioselectivity on the

• rearrangement, we tried to optimize its reaction course under mild conditions using various bases, solvents, and hydrogen-bond-donating catalysts. We also present a computational explanation and NMR kinetic study for the inefficient Ireland–Claisen rearrangement under thiourea and squaramide catalysis. Results

• was performed at 5 °C (Table 2, cf. entries 4 and 5) and the reaction temperature did not affect the diastereoselectivity of the reaction. No product 3c was obtained when the reaction was performed without silyl triflate (Table 2, entry 6). We assumed that hydrogen-bond-donating organocatalysts could

Palladium-catalyzed synthesis and nucleotide pyrophosphatase inhibition of benzo[4,5]furo[3,2-b]indoles

• Hoang Huy Do,
• Saif Ullah,
• Alexander Villinger,
• Joanna Lecka,
• Jean Sévigny,
• Peter Ehlers,
• Jamshed Iqbal and
• Peter Langer

Beilstein J. Org. Chem. 2019, 15, 2830–2839, doi:10.3762/bjoc.15.276

• . However, the zinc–metal interaction was exhibited by the substituted phenyl moiety on the indole ring. The oxygen atom of the furan ring of dual inhibitor 6e showed a single hydrogen bond with Phe548. Asp423 was found to be involved in two π–cation bindings with the indole ring, whereas π–π stacked, π–π T

Emission solvatochromic, solid-state and aggregation-induced emissive α-pyrones and emission-tuneable 1H-pyridines by Michael addition–cyclocondensation sequences

• Natascha Breuer,
• Irina Gruber,
• Christoph Janiak and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2019, 15, 2684–2703, doi:10.3762/bjoc.15.262

• -pyridines 5 was further corroborated by a single crystal X-ray structure determination of compound 5a (Figure 1) [35]. In the single crystal the carboxyl ester group is oriented to the N–H and via a hydrogen bond. Solid-state torsional/dihedral angles between the 4- and 6-positioned aryl rings differ

Unexpected one-pot formation of the 1H-6a,8a-epiminotricyclopenta[a,c,e][8]annulene system from cyclopentanone, ammonia and dimethyl fumarate. Synthesis of highly strained polycyclic nitroxide and EPR study

• Sergey A. Dobrynin,
• Igor A. Kirilyuk,
• Yuri V. Gatilov,
• Andrey A. Kuzhelev,
• Olesya A. Krumkacheva,
• Matvey V. Fedin,
• Michael K. Bowman and
• Elena G. Bagryanskaya

Beilstein J. Org. Chem. 2019, 15, 2664–2670, doi:10.3762/bjoc.15.259

• distorted half-chair. Presumably, this difference is due to the formation of an intramolecular hydrogen bond O6–H…O5 (H…O 1.95(2) Å, O–H…O 154(2)°) in molecule 6. In the crystal of 1 the amino group participates in intermolecular hydrogen bonding N1–H…O3 (H…O 2.39(2) Å, N–H…O 167(1)°) forming chains of

Probing of local polarity in poly(methyl methacrylate) with the charge transfer transition in Nile red

• Aydan Yadigarli,
• Qimeng Song,
• Sergey I. Druzhinin and
• Holger Schönherr

Beilstein J. Org. Chem. 2019, 15, 2552–2562, doi:10.3762/bjoc.15.248

• anomalous fluorescence red shift of fluorophores in alcohols [44]. The additional red shift of NR in protic solvents, such as alcohols and probably chloroform, is associated with the hydrogen-bond formation with the carbonyl group of the dye [45]. The fluorescence maxima of NR in highly polarizable toluene

• substantial (53%) increase of the dipole moment upon excitation of NR. A clear deviation is observed for protic solvents and highly polarizable solvents (with n = 1.421−1.494) due to the different efficiency of hydrogen bond formation and contributions of inductive solute–solvent interactions in the ground

Anion-driven encapsulation of cationic guests inside pyridine[4]arene dimers

• Anniina Kiesilä,
• Jani O. Moilanen,
• Anneli Kruve,
• Christoph A. Schalley,
• Perdita Barran and
• Elina Kalenius

Beilstein J. Org. Chem. 2019, 15, 2486–2492, doi:10.3762/bjoc.15.241

• + formed complexes with 1 and 12, neither using electrospray ionization (ESI) in the positive nor the negative mode. Pr4N+ is certainly too large to fit inside the dimeric capsule, whereas the other non-complexing cations are protic and – as rather strong hydrogen-bond donors – may interfere with

• dispersion correction (hydrogen bond lengths are listed in Table S2, Supporting Information File 1). This is expected, because the standard hybrid functionals are able to describe strong hydrogen bonds such as NH···O and OH···O in a reasonable manner [31][32]. Due to the encapsulated guest molecule, the [12

• + Me4Nendo]+ complex has slightly longer NH···O and OH···O bonds than empty 12. The addition of I− anion(s) at the lower rim(s) of [12 + Me4Nendo]+ has hardly any influence on the length of NH···O and OH···O bonds as exemplified by the hydrogen bond lengths of [12 + Me4Nendo + Iexo] and [12 + Me4Nendo

Ultrafast processes triggered by one- and two-photon excitation of a photochromic and luminescent hydrazone

• Alessandro Iagatti,
• Baihao Shao,
• Alberto Credi,
• Barbara Ventura,
• Ivan Aprahamian and
• Mariangela Di Donato

Beilstein J. Org. Chem. 2019, 15, 2438–2446, doi:10.3762/bjoc.15.236

• the competition between the intramolecular hydrogen bond between the N–H and C=O groups in the Z-form and hydrogen bonds formed by these functional groups with solvent molecules. The conformational distortion and the increased conformational disorder arising from hydrogen bonding with the solvent can

Sugar-derived oxazolone pseudotetrapeptide as γ-turn inducer and anion-selective transporter

• Sachin S. Burade,
• Sushil V. Pawar,
• Tanmoy Saha,
• Navanath Kumbhar,
• Amol S. Kotmale,
• Manzoor Ahmad,
• Pinaki Talukdar and
• Dilip D. Dhavale

Beilstein J. Org. Chem. 2019, 15, 2419–2427, doi:10.3762/bjoc.15.234

• in the presence of valinomycin confirming the transport process occurring through an antiport mechanism via Cl−/NO3− exchange (Figure 8D). Such anion-selective transport can be rationalized based on the binding of anions with the terminal amino group of the transporter through hydrogen bond

Small anion-assisted electrochemical potential splitting in a new series of bistriarylamine derivatives: organic mixed valency across a urea bridge and zwitterionization

• Keishiro Tahara,
• Tetsufumi Nakakita,
• Alyona A. Starikova,
• Takashi Ikeda,
• Masaaki Abe and
• Jun-ichi Kikuchi

Beilstein J. Org. Chem. 2019, 15, 2277–2286, doi:10.3762/bjoc.15.220

• . Such N–H···F hydrogen-bond formation was also reported for other urea derivatives with PF6− as counteranion in the solid state [54][55]. The N···F distance of 2.85 Å in 1b+–PF6− is slightly longer than that observed in the crystal structure of a silver complex having a pyridyl urea ligand (2.67 and

Aggregation-induced emission effect on turn-off fluorescent switching of a photochromic diarylethene

• Luna Kono,
• Yuma Nakagawa,
• Ayako Fujimoto,
• Ryo Nishimura,
• Yohei Hattori,
• Toshiki Mutai,
• Nobuhiro Yasuda,
• Kenichi Koizumi,
• Satoshi Yokojima,
• Shinichiro Nakamura and
• Kingo Uchida

Beilstein J. Org. Chem. 2019, 15, 2204–2212, doi:10.3762/bjoc.15.217

• because the proton transfer occurs through an intramolecular hydrogen bond. This is also an origin of a large Stokes shift (8,000–11,000 cm−1) in the emission from the ESIPT state. Consequently, yellow luminescence was observed by UV-excitation [17][18]. Mutai et al. reported an ESIPT luminescence of an

Click chemistry towards thermally reversible photochromic 4,5-bisthiazolyl-1,2,3-triazoles

• Chenxia Zhang,
• Kaori Morinaka,
• Mahmut Kose,
• Takashi Ubukata and
• Yasushi Yokoyama

Beilstein J. Org. Chem. 2019, 15, 2161–2169, doi:10.3762/bjoc.15.213

• , differences can still be observed. In general, the thermal back reactions are faster in the more polar solvents, and faster in MeCN than in EtOH among these two solvents. However, for 2c, it is faster in EtOH than in MeCN. This may have originated from the hydrogen-bond formation between EtOH molecules and

1,2,3-Triazolium macrocycles in supramolecular chemistry

• Mastaneh Safarnejad Shad,
• Pulikkal Veettil Santhini and
• Wim Dehaen

Beilstein J. Org. Chem. 2019, 15, 2142–2155, doi:10.3762/bjoc.15.211

• selectivity of this receptor for chloride anion is due to the cavity size (see Figure 3) [37]. 2.2. Optical anion sensing by 1,2,3-triazolium macrocycles within porphyrin cages Various porphyrin-based host supramolecules containing hydrogen-bond donor groups such as integrated amide, urea, pyrrole, ammonium

• donors: The benefits of combining the triazolium motif with other hydrogen bond donor motifs has been explored by Sessler et al. and they have synthesized a pyrrole based tetra-1,2,3-triazolium macrocycle 10 (Figure 10) via the tetraalkylation of a triazole macrocycle originally prepared via click

• chemistry. Different hydrogen bond donors such as pyrrole N–H and benzene C–H along with the triazolium C5–H have been successfully incorporated within a single macrocyclic framework. The complex formation of anions with the hydrogen bond donors varied according to the polarity of the solvent. It was found