Synthesis and characterization of water-soluble C₆₀–peptide conjugates

• Yue Ma,
• Lorenzo Persi and
• Yoko Yamakoshi

Beilstein J. Org. Chem. 2024, 20, 777–786, doi:10.3762/bjoc.20.71

• aggregations in aqueous solution, as observed by dynamic light scattering (DLS), cryoTEM, and concentration-dependent surface tension measurements [40]. Despite the small size (≈10 nm in hydrodynamic diameter), the aggregation of these fullerene moieties was not ideal for biological applications as

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

• . At a concentration of 182 μM, murecholamide exhibits biological activity in inhibiting the migration of HT29 cancer cells. The second HSM is noaoxazole (39), which was discovered in Streptomyces sp. HR41 [79]. This substance has a chemical structure with a methylated oxazole ring at the end of a

• ]. Nocarjamide exhibited biological activity by activating Wnt signaling at an effective concentration of 20–40 μM. Wnt signaling plays an important role in a number of vital processes, such as the formation of various tissues and the differentiation/proliferation of eukaryotic cells [122]. It is interesting

Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins

• Zhongwei Hua,
• Nan Liu and
• Xiaohui Yan

Beilstein J. Org. Chem. 2024, 20, 741–752, doi:10.3762/bjoc.20.68

• (ROSs) [28]. Crocins can inhibit the activity of acetylcholinesterase and increase the acetylcholine concentration, thus improving the learning and memory ability of the brain [29]. Moreover, crocins prevent the abnormal aggregation of amyloid β-protein (Aβ), microtubule-associated protein tau, and α

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

• Julien Borrel and
• Jerome Waser

Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64

• source such as green LEDs or a compact fluorescent lamp (CFL) were used only a small decrease in yield could be observed, although 4 hours of irradiation were needed to reach full conversion using CFL (Table 5, entries 8 and 9). The concentration, a factor expected to play an important role in a three

• -component reaction, had surprisingly little influence on the transformation. At lower concentration only a slight decrease of yield was observed, whereas higher concentration led to a similar yield (Table 5, entries 10 and 11). The source of nucleophilic alkyne was evaluated, changing the counter ion from

• -tuning of the reaction conditions was performed. Increasing the concentration to 0.1 M afforded a comparable yield (Table 8, entries 1 and 2). Similarly, the equivalents of alkynyl-BF3K 5a could be reduced to 1.5, a further decrease started to impact the yield (Table 8, entries 3 and 4). Carrying out the

New variochelins from soil-isolated Variovorax sp. H002

• Jabal Rahmat Haedar,
• Aya Yoshimura and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2024, 20, 692–700, doi:10.3762/bjoc.20.63

• five compounds (1–5, Figure 1). The production of these siderophores was high under iron-starvation conditions with 0.1 µM FeCl3 in the media, and began to decrease when the concentration of Fe3+ ions reached 0.5 µM (Figure S1, Supporting Information File 1). The HRESIMS data of the major compound 1

• were collected and spread onto 2xR2A agar plates with chloramphenicol (30 µg/mL) and kanamycin (50 µg/mL). The plates were incubated at 30 °C until colonies formed. The disruption of varG was confirmed by PCR amplification. Effect of ferric ion (Fe3+) concentration on production of variochelins An

• overnight culture of Variovorax sp. H002 in 2xR2A liquid media was transferred to small baffled acrylic flasks containing 15 mL of freshly prepared modified M9 media fortified with 0, 0.5, 1, 5, 10, or 50 µM (final concentration) of FeCl3·6H2O. Upon cultivation at 30 °C/140 rpm for seven days, the cultures

Isolation and structure determination of a new analog of polycavernosides from marine Okeania sp. cyanobacterium

• Kairi Umeda,
• Naoaki Kurisawa,
• Ghulam Jeelani,
• Tomoyoshi Nozaki,
• Kiyotake Suenaga and
• Arihiro Iwasaki

Beilstein J. Org. Chem. 2024, 20, 645–652, doi:10.3762/bjoc.20.57

• culture medium prior to being assayed. The maximum DMSO concentration in the in vitro assays was 1%. The compounds were tested in an AlamarBlue serial drug dilution assay to determine the 50% inhibitory concentrations (IC50) [10]. Serial drug dilutions were prepared in 96-well microtiter plates

• , containing 50 μL of culture medium. Subsequently, 50 μL of a parasite suspension with a concentration of 4.0 × 104 cells/mL was introduced into each well. Cultures were incubated for 69 h at 37 °C under a humidified 5% CO2 atmosphere. After this time, 10 μL of resazurin (12.5 mg resazurin (Sigma) dissolved

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• . Finally, we evaluated the antibacterial activities of the compounds obtained in this study. As a result, only compound 3 exhibited weak activity against Staphylococcus aureus ATCC 6538 and Bacillus cereus with the minimum inhibitory concentration (MIC) of 500 µg/mL, respectively. Preterretonin A, the DMOA

• -derived counterpart of 3, displayed weaker activity against the two bacterial strains and was not active at the concentration of 500 µg/mL. Thus, the lack of the C-5′ methyl group somehow contributes to the biological activity of 3. Conclusion We employed a pathway engineering approach to create a series

A myo-inositol dehydrogenase involved in aminocyclitol biosynthesis of hygromycin A

• Michael O. Akintubosun and
• Melanie A. Higgins

Beilstein J. Org. Chem. 2024, 20, 589–596, doi:10.3762/bjoc.20.51

• using the same protocol as described above for Hyg17 except that a HiLoad 26/600 Superdex 200 pg size-exclusion chromatography column (Cytiva) equilibrated in 50 mM NaCl, 20 mM Tris pH 8.0 was used. Protein concentration was determined by UV absorbance at 280 nm using the calculated extinction

Synthesis of photo- and ionochromic N-acylated 2-(aminomethylene)benzo[b]thiophene-3(2Н)-ones with a terminal phenanthroline group

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Irina V. Dubonosova,
• Olga Yu. Karlutova,
• Oleg P. Demidov,
• Alexander D. Dubonosov and
• Vladimir A. Bren

Beilstein J. Org. Chem. 2024, 20, 552–560, doi:10.3762/bjoc.20.47

• ) were used. 1 mL of a 2a–c solution and 1 mL of a perchlorate solution were mixed directly in the cuvette and thoroughly stirred. Hence, the working concentration of the compounds 2–c and the cations was 5.0 × 10–5 mol⋅L−1 and 1.0 × 10−5 mol⋅L−1. HRMS analysis was performed on a Bruker UHR-TOF Maxis

• after the addition of metal perchlorates (с2a 5 × 10−5 mol·L−1, сM2+ 1.0 × 10−4 mol·L−1). Job’s plot at the wavelength 429 nm, reflecting the interaction of compound 2a with Fe2+ in acetonitrile. The total concentration c2a + cFe2+ was 1.5 × 10−4 mol·L−1. Fluorescence intensity of compound 2a upon

Synthesis and biological profile of 2,3-dihydro[1,3]thiazolo[4,5-b]pyridines, a novel class of acyl-ACP thioesterase inhibitors

• Jens Frackenpohl,
• David M. Barber,
• Guido Bojack,
• Birgit Bollenbach-Wahl,
• Ralf Braun,
• Rahel Getachew,
• Sabine Hohmann,
• Kwang-Yoon Ko,
• Karoline Kurowski,
• Bernd Laber,
• Rebecca L. Mattison,
• Thomas Müller,
• Anna M. Reingruber,
• Dirk Schmutzler and
• Andrea Svejda

Beilstein J. Org. Chem. 2024, 20, 540–551, doi:10.3762/bjoc.20.46

• pI50 values were calculated from plots of inhibition values vs test compound concentration using Model 205 of the ID Business Solutions Ltd Xlfit software suite. The FAT A binding fluorescent tracer was synthesized from (2S,4S)-4-[(2,6-difluorophenyl)methoxymethyl]-4-ethyl-2-methyl-N-(prop-2

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• faster with more Lewis basic urea substrates, (3) mixed solvents are uniquely able to enhance rates, with protic methanol and DCM identified as the best combination, and (4) kinetic isotope effects are variable depending on the concentration of protons in solution with small deuterium KIE’s at low

• concentration of deuterated species and large solvent KIE’s when performed in pure CH3OH versus CD3OD. Connections between catalyst activity and decomposition were made and a structurally interesting new bisphosphine–gold complex was isolated. Although our results do not provide conclusive evidence for or

• , Table 2, entry 4). We were not able to determine the maximum impact of added MeOH, because the rate of cyclization became too fast to be detectable by 1H NMR kinetics (t < 5 minutes). A LN-LN plot of MeOH concentration versus observed rate gives a slope of 0.7, indicating less than first order

Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• , the bacteria were cultivated in the LB broth medium at 37 °C for the human pathogenic bacteria, while the temperature was 28 °C for the aquatic pathogens, and they were prepared at a concentration of 1.5 × 108 CFU/mL. Tested compounds and positive control (chloramphenicol) were dissolved in DMSO to

• give a stock solution with DMSO as a negative control. Then, 95 μL of thus prepared bacteria and 5 μL of the above tested compounds or chloramphenicol (with the final concentration of 0.5, 1, 2, 4, 8, 16, 32, 64 μg/mL) were added into the 96-well plates and cultivated at 37 °C or 28 °C for 24 h

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• reduction in the concentration of these cytokines, as well as, increased intestinal permeability and improved expression of tight junction proteins that control the polarity of cells when using DIM in Caco-2 human cells [3]. BIMs have also been linked with the therapy of various cancers with one of their

• -effects that it can cause in the more sensitive subgroups of patients. Specifically, when DIM was used in tandem with tamoxifen, the ratio between 2OHE1/16αOHE1 increased up to 229%, as well as the concentration of the sex hormone binding globulin (SHBG) that inhibits the growth of breast cancer cells [4

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• resulting concentration of radicals. In such instances, opting for a stronger catalytic reductant or utilizing a stoichiometric electron donor can greatly improve the efficiency of radical generation. On the other hand, additional factors such as the ability of Brønsted and Lewis acid additives to promote

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• kinetics allowed us to derive an IC50 of 1.4 µM (Figure S2a,b; Supporting Information File 2). No inhibition was observed with chondroitin 6-sulfate tetrasaccharide (CSC), and only very weak inhibition for BGHT2 but no IC50 could be determined as we could not increase the concentration to reach the plateau

• crystallography. We obtained several hits for the full-length protein after sparse screening using a crystallization robot at the HTX platform, EMBL, Grenoble. Pill-shaped crystals obtained under conditions of a high salt concentration, in particular ammonium sulfate (Figure S3, Supporting Information File 2

• reference (streptavidin only) and subtracting a blank injection (running buffer – zero analyte concentration). Data evaluation and curve fitting was performed using the provided BIACORE X100 evaluation software (version 2.0). Measurements were at least done in duplicate. Then, to perform competition

Unveiling the regioselectivity of rhodium(I)-catalyzed [2 + 2 + 2] cycloaddition reactions for open-cage C₇₀ production

• Cristina Castanyer,
• Anna Pla-Quintana,
• Anna Roglans,
• Albert Artigas and
• Miquel Solà

Beilstein J. Org. Chem. 2024, 20, 272–279, doi:10.3762/bjoc.20.28

• were run using other solvents such as toluene and chlorobenzene, increasing the C70 concentration from 1.2 M to 2.4 M, and decreasing the catalytic load to 5 mol % (Table S1 in Supporting Information File 1). However, none of these trials improved the yield of bis(fulleroid) 2a. The same reaction was

Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• cyclic voltammogram of 1. (B) Cyclic voltammograms of 1 in the presence of additives (AcOH or HFIP). (C) Comparison of oxidation potentials of 1 using Bu4NOAc or Bu4NCl. (D) Cyclic voltammograms for the cathodic side. All cyclic voltammograms were recorded in CH2Cl2/Bu4NPF6 (0.1 M). Sample concentration

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• and straightforward as it is usually considered. Keywords: concentration; glycosylation; protecting groups; reactivity; sialic acids; stereoselectivity; Introduction Glycoconjugates containing sialic acid occur on the surface of all cell types in a variety of organisms. They participate in a broad

• ]. As in other glycosylation reactions [22][23][24][25][26][27][28][29], the result of sialylation is affected by a variety of variables [30][31][32][33][34][35][36][37][38][39] including the nature of protective groups on either partner [26][38][40][41][42][43][44][45] and concentration of reagents [31

• affect the outcome of glycosylation [31][33][34][37][39][43][44][46][56][57], one must choose a concentration at which to perform the test glycosylation. This can be done either by analogy with similar reactions or by utilizing some rationalization, the second approach is more attractive. For the

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• large excess of HF·Py (40 equiv) proved to be necessary to remove the bulky silyl group. After concentration, the crude product was acetylated (Ac2O/Py, 1:2, v/v), furnishing per-acetylated compound 8 in a 53% yield over the 3 steps. Deacetylation of 8 with freshly prepared 1 M NaOMe/MeOH in MeOH at pH

• cell. Samples were prepared at the concentration (g/100 mL) in the solvent indicated. Deprotected glycans were lyophilised using a freeze-dryer Alpha 1-2 LDplus (Christ Ltd): pressure: 0.055 mbar; ice-condenser temperature: −55 °C. 2-[2-(2-Azidoethoxy)ethoxy]ethyl 3-O-acetyl-2-deoxy-4,6-O-di-tert

• hours. Filtration followed by concentration and lyophilisation of the filtrate yielded 2 as a pale-yellow foam (972 mg, 66%). Rf = 0.3 (EtOAc/MeOH, 3:2); [α]D +76 (c 1.0, H2O); 1H NMR (500 MHz, D2O) δ 4.95 (d, J = 3.8 Hz, 1H, H-1GalNAc), 4.62 (d, J = 7.9 Hz, 1H, H-1Gal), 4.41–4.31 (m, 4H, H-2GalNAc, H

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• results in the formation of a 6,6-dicyano-heteropentafulvene derivative 37 as an additional byproduct along with the typical TCBD adduct 4 (Scheme 14) [117]. The yields and formation ratios of 4 and 37 depend on the type and concentration of the surfactant employed. For instance, when the nonionic

• surfactant, Brij 30, was used as the reaction solvent at a concentration of 20 mM, exceeding the critical micelle concentration, 4 and 37 were obtained in a ratio of 53:47, with 64% yield. Notably, 37 exhibits instability in silica gel and polar solvents. In particular, when 37 is kept in ethyl acetate or

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• comparison with control experiments without photosensitizer. In general, a photoinduced DNA damage by the quinolizinium 3f was observed, whose extent increased with increasing irradiation time and with increasing concentration of 3f. Thus, after 2 min of irradiation with fixed concentration (c = 2.5 × 10−5 M

• ) 38% of the supercoiled DNA were transformed to the open-circular form, whereas after 5 min, 73% of the DNA were damaged by strand cleavage (Table 2A). At the same time, experiments with varying ligand concentration revealed 81% of damaged DNA after 2 min of irradiation with c = 5.0 × 10−5 M, which

• -electrophoretic analysis of photoinduced DNA-strand cleavage in the presence of 3f depending on the irradiation time (A), on the concentration (B), and in the presence of 3c,e–g (C). Lanes 1, 10 and 11 (A) and lane 11 (B): control experiment without 3f. Lanes 1 and 2 (B): control experiment without 3f, irradiated

Optimizing reaction conditions for the light-driven hydrogen evolution in a loop photoreactor

• Pengcheng Li,
• Daniel Kowalczyk,
• Johannes Liessem,
• Mohamed M. Elnagar,
• Dariusz Mitoraj,
• Radim Beranek and
• Dirk Ziegenbalg

Beilstein J. Org. Chem. 2024, 20, 74–91, doi:10.3762/bjoc.20.9

• coefficient, c is the concentration of a light-absorbing solute, and d is the optical path length. Figure 8 shows the measured absorbance as function of the photocatalyst loadings in the methanol/water solution using different optical path lengths. The absorbance depends linearly on the photocatalyst

• concentration for low concentrations, which agrees with the Beer–Lambert law [33][34]. An extinction coefficient of 3.5 L g−1 cm−1 was determined by fitting the experimental data. The deviation of the absorbance from the linear relation is attributed to increased scattering at high loadings and/or long optical

• photon flux density, c0 is the photocatalyst concentration, and kr is the recombination rate. The linear correlation between reaction rate and photon flux visible in Figure 12b indicates that the system is still in regime 1 and the hydrogen generation rate is limited by the available photon flux, even

Preparing a liquid crystalline dispersion of carbon nanotubes with high aspect ratio

• Keiko Kojima,
• Nodoka Kosugi,
• Hirokuni Jintoku,
• Kazufumi Kobashi and
• Toshiya Okazaki

Beilstein J. Org. Chem. 2024, 20, 52–58, doi:10.3762/bjoc.20.7

• dispersion is likely composed mostly of isolated DWCNTs. To investigate the liquid crystal behavior, the DWCNT dispersion was concentrated by ultra-filtration (Figure 2a). As the concentration of DWCNTs increased, the isotropic phases (Figure 2d, the DWCNT concentration = 0.078 vol %) changed to the nematic

• phase (Figure 2b, the DWCNT concentration = 0.41 vol %). At intermediate concentrations, biphasic states appeared where the nematic droplets, tactoid, coexisted in the isotropic phase (Figure 2c, the DWCNT concentration = 0.16 vol %) [15][17][22][23][29][30]. The nematic phase shows disturbed textures

• obtained values for the SWCNT-SC dispersions (L/D = 1088 and = 665, black symbols) [22][23]. The Onsager theory predicts that the phase transition concentration for rod-like particles with aspect ratio L/D is ϕiso~bip = 3.34 D/L and ϕbip~nem = 4.49 D/L [24]. The L/D dependence of each phase transition

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• study was performed by monitoring the appearance of the zwitterion absorption by means of UV–vis spectroscopy in chloroform or in methanol as the solvent. The concentration of the respective Michael acceptor was varied ([Michael acceptor] = 2.5 mmol/L to 10 mmol/L) and was at least ten-fold higher than

• the concentration of the phosphine 1 ([1] = 0.25 mmol/L) to obtain pseudo first-order kinetics. Figure 4 shows typical time vs conversion plots for an initial Michael acceptor concentration of 7.5 mmol/L. Time conversion plots were then evaluated using COPASI [47]. To obtain second-order rate