1,2,3,4-Tetrahydro-1,4,5,8-tetraazaanthracene revisited: properties and structural evidence of aromaticity loss

• Arnault Heynderickx,
• Sébastien Nénon,
• Olivier Siri,
• Vladimir Lokshin and
• Vladimir Khodorkovsky

Beilstein J. Org. Chem. 2019, 15, 2059–2068, doi:10.3762/bjoc.15.203

• ) and N–H···Cl (6a). The experimental (averaged) and calculated selected bond lengths are listed in Table 1. There are two independent molecules of 3 in the cell, bound with the short =N···H–N< hydrogen bond of 2.184 Å (Figure 2). Examination of the bond distances within the N2–C1–C14–C13–N12, N5–C6–C7

Synthesis of 1-azaspiro[4.4]nonan-1-oxyls via intramolecular 1,3-dipolar cycloaddition

• Yulia V. Khoroshunova,
• Denis A. Morozov,
• Andrey I. Taratayko,
• Polina D. Gladkikh,
• Yuri I. Glazachev and
• Igor A. Kirilyuk

Beilstein J. Org. Chem. 2019, 15, 2036–2042, doi:10.3762/bjoc.15.200

• nitroxides [26], implying free rotation of ethyl groups. In the EPR spectra in toluene the nitroxides 11a–c show 0.035–0.04 mT lower hfs constants on nitrogen atom compared to nitroxides 12a–c, presumably due to intramolecular hydrogen bond formation. The difference in aN between 11a–c and 12a–c is almost

Complexation of chiral amines by resorcin[4]arene sulfonic acids in polar media – circular dichroism and diffusion studies of chirality transfer and solvent dependence

• Bartosz Setner and
• Agnieszka Szumna

Beilstein J. Org. Chem. 2019, 15, 1913–1924, doi:10.3762/bjoc.15.187

• conclusion comes from a comparison of complexes in methanol and DMSO. One would expect that due to the dual hydrogen bond donor/acceptor character of methanol this solvent should be more destructive to ion-pair complexes based on charged hydrogen bonds than DMSO that can only serve as a hydrogen bond

Tautomerism as primary signaling mechanism in metal sensing: the case of amide group

• Vera Deneva,
• Georgi Dobrikov,
• Aurelien Crochet,
• Daniela Nedeltcheva,
• Katharina M. Fromm and
• Liudmil Antonov

Beilstein J. Org. Chem. 2019, 15, 1898–1906, doi:10.3762/bjoc.15.185

• can be seen that a hydrogen bond is formed between the nitrogen proton of one keto tautomer and the carbonyl group of another neighboring molecule. Probably, the process of associate formation is facilitated by the position of the chromophore part in the isolated K form (Figure 3, left). Obviously

• , based on 4-(phenyldiazenyl)naphthalen-1-ol. According to the theoretical calculations the enol form stabilization could be achieved through a strong intramolecular hydrogen bond formed between the tautomeric hydroxy group and the carbonyl group from the tautomeric backbone. However, intermolecular

Complexation of 2,6-helic[6]arene and its derivatives with 1,1′-dimethyl-4,4′-bipyridinium salts and protonated 4,4'-bipyridinium salts: an acid–base controllable complexation

• Jing Li,
• Qiang Shi,
• Ying Han and
• Chuan-Feng Chen

Beilstein J. Org. Chem. 2019, 15, 1795–1804, doi:10.3762/bjoc.15.173

• with larger counteranions of the guests and in less polar solvents. Furthermore, the switchable complexation between the helic[6]arene and protonated 4,4'-bipyridinium salt could be efficiently controlled by acids and bases. Keywords: 4,4'-bipyridinium salts; complexation; helic[6]arene; hydrogen bond

• protons of G1 and the aromatic rings of H1 with distances of 2.683 for A, 2.845 for B, 2.788 for C, 2.802 for D, and 2.868 Å for E, respectively. There also exist π–π stacking interactions between the pyridinium of G1 and the aromatic ring of H1 with the distance of 3.854 Å for F, a CH···O hydrogen bond

Water inside β-cyclodextrin cavity: amount, stability and mechanism of binding

• Stiliyana Pereva,
• Valya Nikolova,
• Silvia Angelova,
• Tony Spassov and
• Todor Dudev

Beilstein J. Org. Chem. 2019, 15, 1592–1600, doi:10.3762/bjoc.15.163

• /narrow belt) can be arranged in two alternative ways: (i) facing inward and creating a hydrogen-bond girdle (“head–tail” arrangement) that greatly decreases the size of the cavity vestibule (Figure 1A), and (ii) facing outward thus widening the aperture (“open” configuration, Figure 1B). Notably, in the

• “open” configuration the primary hydroxy groups do not participate in intramolecular hydrogen bond interactions. Relatively weak hydrogen bonds are formed between the secondary hydroxy groups in the wider/lower rim of the molecule. The calculations reveal that the “head–tail” arrangement of the narrow

• rim is the preferred mode of coordination (n = 2; Figure 2, structure a). In this construct the water dimer not only connects two oppositely located OH groups from the rim, but additionally interacts with four other OH groups and forms an elaborate hydrogen-bond network that almost occludes the

Synthesis and conformational preferences of short analogues of antifreeze glycopeptides (AFGP)

• Małgorzata Urbańczyk,
• Michał Jewgiński,
• Joanna Krzciuk-Gula,
• Jerzy Góra,
• Rafał Latajka and
• Norbert Sewald

Beilstein J. Org. Chem. 2019, 15, 1581–1591, doi:10.3762/bjoc.15.162

• the formation of an intramolecular hydrogen bond are characterized by chemical shifts that are independent on the temperature. When the amide proton is involved in a hydrogen bond, its temperature factor value is lower than 4.0 ppb/K [29][30]. Values of the measured temperature coefficient factors

• (see Table 1) suggest that the conformation of each of the investigated pentapeptides is stabilized by one hydrogen bond, created by the amide proton of Ala4. In the case of peptide 4 we could observe the strongest hydrogen bond (Table 1). Previous studies pointed out the role of specific hydrogen

• bonds between the peptide backbone and GalNAc moiety, which are responsible for creating the extended conformation [31][32]. However, further NMR investigations in this area found no evidence of an intramolecular hydrogen bond, or the existence of a very weak interaction, between the carbonyl group of

Enantioselective PCCP Brønsted acid-catalyzed aza-Piancatelli rearrangement

• Gabrielle R. Hammersley,
• Meghan F. Nichol,
• Helena C. Steffens,
• Jose M. Delgado,
• Gesine K. Veits and
• Javier Read de Alaniz

Beilstein J. Org. Chem. 2019, 15, 1569–1574, doi:10.3762/bjoc.15.160

• hydrogen bond group afforded the best selectivity (7k). To simplify the purification process, all acid products were transformed into the corresponding methyl ester in situ using (trimethylsilyl)diazomethane. A slight drop in enantioselectivity is observed when the benzoic acid group was moved to the meta

• furan ring required to initiate the cascade sequence. This highlights that a balance between nucleophilicity and hydrogen bond capabilities are required to obtain an efficient and selective reaction. Compared to the rearrangement of furylcarbinol 1a, sterically bulky aryl groups attached to the

A heteroditopic macrocycle as organocatalytic nanoreactor for pyrroloacridinone synthesis in water

• Piyali Sarkar,
• Sayan Sarkar and
• Pradyut Ghosh

Beilstein J. Org. Chem. 2019, 15, 1505–1514, doi:10.3762/bjoc.15.152

• environmentally oriented efficient organocatalysts with prominence “on-water conditions” [30][31]. It is known that an important condition for an organic reaction in water is the aggregation of the reactants and the catalyst by hydrophobic forces. Further, the potential of hydrogen-bond donation may be a vital

Synthesis and biological evaluation of truncated derivatives of abyssomicin C as antibacterial agents

• Leticia Monjas,
• Peter Fodran,
• Johanna Kollback,
• Carlo Cassani,
• Thomas Olsson,
• Maja Genheden,
• D. G. Joakim Larsson and
• Carl-Johan Wallentin

Beilstein J. Org. Chem. 2019, 15, 1468–1474, doi:10.3762/bjoc.15.147

• conformations and with expected interaction points in the binding site, providing suitable docking scores (see Supporting Information File 1). The key interactions include a hydrogen bond to the backbone of Arg-45 and lipophilic interactions in the deep pocket defined by Phe-241 and Leu-34 (Figure 2). Our

2,3-Dibutoxynaphthalene-based tetralactam macrocycles for recognizing precious metal chloride complexes

• Li-Li Wang,
• Yi-Kuan Tu,
• Huan Yao and
• Wei Jiang

Beilstein J. Org. Chem. 2019, 15, 1460–1467, doi:10.3762/bjoc.15.146

• parallel orientation. Three of the four NH protons are directed into the cavity, and the fourth one flipped outward and forms a hydrogen bond with the oxygen atom of H2O (H···O distance: 1.97 Å). Two CH3CN molecules were trapped in the cavities by the amide groups through N–H···N hydrogen bonds (H···N

Selenophene-containing heterotriacenes by a C–Se coupling/cyclization reaction

• Pierre-Olivier Schwartz,
• Sebastian Förtsch,
• Astrid Vogt,
• Elena Mena-Osteritz and
• Peter Bäuerle

Beilstein J. Org. Chem. 2019, 15, 1379–1393, doi:10.3762/bjoc.15.138

• (Figure 2b), because a completely flat geometry of the isolated molecule DST 3 (in the gas phase) was obtained from theoretical calculations (vide infra). Molecules of DST 3 order in a typical herringbone fashion, where the terminal hydrogen atoms form hydrogen bond-like C–H heteroatom interactions (2.819

Stereo- and regioselective hydroboration of 1-exo-methylene pyranoses: discovery of aryltriazolylmethyl C-galactopyranosides as selective galectin-1 inhibitors

• Alexander Dahlqvist,
• Axel Furevi,
• Niklas Warlin,
• Hakon Leffler and
• Ulf J. Nilsson

Beilstein J. Org. Chem. 2019, 15, 1046–1060, doi:10.3762/bjoc.15.102

• the anomeric position of the minimal D-galactose ligand allows for an additional affinity-enhancing hydrogen bond according to structural and affinity analyses [20][21]. A complementary strategy has been to, instead of a second saccharide unit, add non-natural structural elements to a monogalactoside

Catalytic asymmetric oxo-Diels–Alder reactions with chiral atropisomeric biphenyl diols

• Chi-Tung Yeung,
• Wesley Ting Kwok Chan,
• Wai-Sum Lo,
• Ga-Lai Law and
• Wing-Tak Wong

Beilstein J. Org. Chem. 2019, 15, 955–962, doi:10.3762/bjoc.15.92

• : asymmetric organocatalysis; axial chirality; biaryls; hydrogen bond; oxo-Diels–Alder reaction; Introduction The Diels–Alder (DA) reaction is a useful and easy-to-perform method for the synthesis of six-membered rings through the direct formation of C–C bonds between a diene and a dienophile (a substituted

• hydrogen bonding organocatalyst for the reaction between 1-dimethylamino-3-tert-butyldimethylsilyloxy-1,3-butadiene (Rawal’s diene) and aldehydes with excellent enantioselectivities (aromatic aldehyde: up to 86–98% ee) in 2003 [27]. Activation via a single-point hydrogen bond between one of the hydroxy

• other biphenyl hybrid diols with different steric bulky substituents were incorporated (3 and 4). Since it is known that the catalyst acidity has significant influence on hydrogen-bond-catalyzed reactions [32], we also incorporated a CF3 group in our molecular scaffold to investigate how it would affect

Halogen bonding and host–guest chemistry between N-alkylammonium resorcinarene halides, diiodoperfluorobutane and neutral guests

• Fangfang Pan,
• Mohadeseh Dashti,
• Michael R. Reynolds,
• Kari Rissanen,
• John F. Trant and
• Ngong Kodiah Beyeh

Beilstein J. Org. Chem. 2019, 15, 947–954, doi:10.3762/bjoc.15.91

• inclusion guest (1,4-dioxane), the lattice solvent molecules, regardless of their polarity, insert between two N-hexyl arms using an OH/CH···Br− hydrogen bond (Figure 2) [32]. To better understand whether this is fundamental to these systems, or a result of the enforced geometry caused by the included guest

• , which are ca. 41 and 53 Å3, respectively [35]. Hence, the resorcinarene has to deform to adapt to the small guests by maximizing the contacts between the host and guest (Figure 3). In detail, in the MeCN occupied systems, the N atom is stabilized by an NH···N hydrogen bond and a weak pnictogen bond to a

• were positioned at the same level as the (HNH···Cl−)4 HB circle. The O···Cl− distances of 3.13(3) and 3.22(4) Å suggest OH···Cl− hydrogen bonds. Meanwhile, an OH···O hydrogen bond should also exist between the two water molecules with the O···O distance of 3.01(5) Å. It is surprising to find that the

Mechanochemistry of supramolecules

• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2019, 15, 881–900, doi:10.3762/bjoc.15.86

• . In 2008, they have established a [2 + 2] photodimerization through solid-state grinding either in neat or liquid-assisted conditions [93]. To achieve 100% stereospecific products they considered resorcinol derivatives as hydrogen-bond donors for the photodimerization of 1,2-di(pyridin-4-yl)ethylene

• (Figure 21a). However, 1,8-dipyridylnaphthalene was used as hydrogen-bond acceptor for the [2 + 2] cycloaddition of fumaric acid derivatives (Figure 21b). In 2017 Purse and co-workers reported the host–guest chemistry of pyrogallo[4]arene (39) hexamers under mechano-milling conditions [94]. A hexameric

• , supramolecular catalysis proposes a much simpler model to understand the catalytic activity of enzymes. In 2010, MacGillivray and co-workers have demonstrated the concept of “supramolecular catalysis” in a hydrogen-bond-assisted self-assembled formation of a [2 + 2]-cycloaddition product. The reaction was found

Coordination chemistry and photoswitching of dinuclear macrocyclic cadmium-, nickel-, and zinc complexes containing azobenzene carboxylato co-ligands

• Jennifer Klose,
• Tobias Severin,
• Peter Hahn,
• Alexander Jeremies,
• Jens Bergmann,
• Daniel Fuhrmann,
• Jan Griebel,
• Bernd Abel and
• Berthold Kersting

Beilstein J. Org. Chem. 2019, 15, 840–851, doi:10.3762/bjoc.15.81

• lengths reveal no anomalies and are similar to those in [Zn2L(μ-OAc)]+. There are no π–π stacking interactions between the azobenzene moieties. However, the [Zn2L(μ-azo-OH)]+ and [Zn2L(μ-azo-O)] complexes are connected by a OH···O hydrogen bond of length 2.46 Å (O3a···O3b, not shown in Figure 4). [Zn2L(μ

Catalyst-free assembly of giant tris(heteroaryl)methanes: synthesis of novel pharmacophoric triads and model sterically crowded tris(heteroaryl/aryl)methyl cation salts

• Rodrigo Abonia,
• Luisa F. Gutiérrez,
• Braulio Insuasty,
• Jairo Quiroga,
• Kenneth K. Laali,
• Chunqing Zhao,
• Gabriela L. Borosky,
• Samantha M. Horwitz and
• Scott D. Bunge

Beilstein J. Org. Chem. 2019, 15, 642–654, doi:10.3762/bjoc.15.60

• distance between the quinolone carbonyl and the OH of hydroxycoumarin (H(1)–O(4) 1.740 Å). The DFT-optimized structure of 9{4,7,1} (Figure 4) confirms the formation of a highly stable hydrogen bond between the quinolone carbonyl and the OH of hydroxycoumarin, with a O···H bond distance of 1.603 Å. It

Synthesis of the aglycon of scorzodihydrostilbenes B and D

• Katja Weimann and
• Manfred Braun

Beilstein J. Org. Chem. 2019, 15, 610–616, doi:10.3762/bjoc.15.56

• transition metal-mediated, regioselective, chelation-directed activation of an aryl–hydrogen bond. A promising approach was seen in an application of Murai’s elegant ruthenium-catalyzed ortho-functionalization of aryl alkyl ketones and their addition to olefins [11][12][13][14][15]. This route appeared

Dirhodium(II)-catalyzed [3 + 2] cycloaddition of N-arylaminocyclopropane with alkyne derivatives

• Wentong Liu,
• Yi Kuang,
• Zhifan Wang,
• Jin Zhu and
• Yuanhua Wang

Beilstein J. Org. Chem. 2019, 15, 542–550, doi:10.3762/bjoc.15.48

• 3,5-dimethyl compound 1d afforded the desired product 3d with an excellent yield of 91% (Table 2, entry 3). We reasoned the electron-withdrawing groups on the arene increased the nitrogen–hydrogen bond dissociation energy (BDEN–H) of compound 1 [21], decreasing the rate of ring opening. Substrates 1i

Study on the regioselectivity of the N-ethylation reaction of N-benzyl-4-oxo-1,4-dihydroquinoline-3-carboxamide

• Pedro N. Batalha,
• Luana da S. M. Forezi,
• Maria Clara R. Freitas,
• Nathalia M. de C. Tolentino,
• Ednilsom Orestes,
• José Walkimar de M. Carneiro,
• Fernanda da C. S. Boechat and
• Maria Cecília B. V. de Souza

Beilstein J. Org. Chem. 2019, 15, 388–400, doi:10.3762/bjoc.15.35

• ), and anticancer activity for three cancer cell lines (Figure 1) [16]. Although it is not a general rule for achieving a bioactive profile, any groups attached to C-3 of the 4-oxoquinoline moiety, especially those containing a hydrogen bond donor group, such as a carboxyl, an acyl hydrazide or a

• carboxamide group, may contribute to enhance the bioactivity. This fact could be explained by the coplanarity induced by the C-4 carbonyl hydrogen bond interactions with biological targets [3] or complexation with physiological metal cations such as magnesium and zinc [23]. Besides the derivatives 3a and 3b

• , accomplished through temperatures above 200 °C, any derivatization afterwards should maintain the N–H carboxamide group intact, in order to provide the hydrogen bond donor group attached to C-3, which is usually related to the bioactivity of such compounds (Figure 2) [3][23]. In order to obtain an N1-alkylated

Application of olefin metathesis in the synthesis of functionalized polyhedral oligomeric silsesquioxanes (POSS) and POSS-containing polymeric materials

• Patrycja Żak and
• Cezary Pietraszuk

Beilstein J. Org. Chem. 2019, 15, 310–332, doi:10.3762/bjoc.15.28

• of the acid and the directionality of the hydrogen bond pattern of the acid dimer. Cross metathesis of monovinyl-substituted POSS with olefins has been reported for the first time by Marciniec [18]. It was demonstrated that monovinylheptaisobutyl-substituted octasilsesquioxane (monovinyl-POSS

Synthesis of nonracemic hydroxyglutamic acids

• Dorota G. Piotrowska,
• Iwona E. Głowacka,
• Andrzej E. Wróblewski and
• Liwia Lubowiecka

Beilstein J. Org. Chem. 2019, 15, 236–255, doi:10.3762/bjoc.15.22

• these studies should facilitate the development of new ligands. In terms of mapping of glutamate receptors hydroxyglutamic acids 2–4 (Figure 2) should be of great interest since an additional hydroxy group is capable of acting as a hydrogen bond donor as well as a hydrogen bond acceptor. In fact (2S,4S

Silanediol versus chlorosilanol: hydrolyses and hydrogen-bonding catalyses with fenchole-based silanes

• Falco Fox,
• Jörg M. Neudörfl and
• Bernd Goldfuss

Beilstein J. Org. Chem. 2019, 15, 167–186, doi:10.3762/bjoc.15.17

• )–2.05(2) Å) than with chlorosilanol 8 (OH···2.16(0) Å). Due to its two hydroxy units, the silanediol 9 shows higher catalytic activity as hydrogen bond donor than chlorosilanol 8, e.g., C–C coupling N-acyl Mannich reaction of silyl ketene acetals 11 with N-acylisoquinolinium ions (up to 85% yield and 12

• ]) to the corresponding silanediols. While hydrolyses of dichlorosilanes have been studied extensively [23][24][25], hydrolyses of alkoxy dichlorosilanes are much less explored. Hydrogen bond donor (HBD) catalysis is an emerging field in organic synthesis [26][27][28], employing, e.g., squaramides [29

• the OH(ax) and the Cl(eq) is found, in addition to the C–H interaction (dotted line, Figure 9), which stabilized the leaving Cl ion with a weak hydrogen bond. In the front attack mechanisms for the second hydrolytic step only stabilizing C–H interactions from the fenchyl group to the chloro atom occur

Computational characterization of enzyme-bound thiamin diphosphate reveals a surprisingly stable tricyclic state: implications for catalysis

• Ferran Planas,
• Michael J. McLeish and
• Fahmi Himo

Beilstein J. Org. Chem. 2019, 15, 145–159, doi:10.3762/bjoc.15.15

• with ThDP, all of which are expected to affect the cofactor’s geometry and energy. Of particular interest is the conserved Glu47 residue which forms a hydrogen bond to N1' of the pyrimidine ring. It is important to note that, during the geometry optimizations of the three states YIH+, APH+ and TCH

• hydrogen bond between the Nε and the exocyclic N4' amino group, a bond that is not present in the other states. With that notable exception, the overall geometries of the different states are quite similar, and bond distances are also fairly consistent (Figure 3). As with model A, the AP state is found to

• changes somewhat between the states (Figure 4). Interestingly, there is a hydrogen bond from the water to the anionic C2 carbon in the YI state (OH…C distance of 1.91 Å), with the negative charge on C2 further stabilized by interaction with the exocyclic NH2 group (NH…C distance of 2.17 Å). The