Fluorinated phenylalanines: synthesis and pharmaceutical applications

• Laila F. Awad and
• Mohammed Salah Ayoup

Beilstein J. Org. Chem. 2020, 16, 1022–1050, doi:10.3762/bjoc.16.91

• reactions, rather than the less-reactive organozinc reagents [36] (Scheme 1). Decreasing the molar ratio of Pd2(dba)3/SPhos to 0.25:0.5 mol % provided a lower yield of 3a (21%), whereas 3b showed only a slight decrease in yield (77%). The two-inseparable para/meta isomers of all-cis-2,3,5,6

• useful Boc-(R)-amino acids 38a,b [44] (Scheme 8). A one-pot double alkylation of the chiral auxiliary 39 with benzyl iodides 40a,b gave cis-dialkyl derivatives 41a,b in 70–72% yield. The subsequent removal of the auxiliary followed by treatment with Fmoc-OSu gave the N-protected 2-fluoro- and 2,6

• treatment of type II diabetes. Structure of ulimorelin (187). Structure of GLP1R (188). Structures of Nav1.7 blockers 189 and 190. Synthesis of fluorinated phenylalanines via Jackson’s method. Synthesis of all-cis-tetrafluorocyclohexylphenylalanines. Synthesis of ʟ-4-[sulfono(difluoromethyl)]phenylalanine

Copper catalysis with redox-active ligands

• Agnideep Das,
• Yufeng Ren,
• Cheriehan Hessin and
• Marine Desage-El Murr

Beilstein J. Org. Chem. 2020, 16, 858–870, doi:10.3762/bjoc.16.77

• cyclopropanation through a strained redox-active ligand framework reminiscent of the entatic state model. Products are obtained as a mixture of cis and trans isomers. Funding This work has been supported through funding from the Université de Strasbourg, CNRS, IDEX Excellence Initiative (AD), Emergence Sorbonne

Aldehydes as powerful initiators for photochemical transformations

• Maria A. Theodoropoulou,
• Nikolaos F. Nikitas and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2020, 16, 833–857, doi:10.3762/bjoc.16.76

• -butyl ketone (1) yields acetone (4) and propylene (3). Reaction (2) of Scheme 1 refers to a type II intramolecular rearrangement of crotonaldehyde (5) to 3-butenal (7). The triplet state energy donors were quenched by diacetyl and cis-2-butene. In 1970, Cocivera and Trozzollo studied the photolysis of

• shed more light on some mechanistic pathways and set the key foundation for the further use as photoinitiators or photocatalysts. In 1961, Hammond and co-workers studied the cis/trans isomerization of the piperylenes (1,3-pentadienes) 61 and 62 in the presence of carbonyl compounds as photosensitizers

• (Scheme 15) [50]. Among the compounds tested, 1-naphthaldehyde (63) provided a photostationary mixture rich in the trans-diene (trans/cis ratio ≈ 13). A year later, the same group further studied the cis/trans isomerization of the piperylenes 61 and 62 utilizing energy transfer from the triplet states of

Preparation of 2-phospholene oxides by the isomerization of 3-phospholene oxides

• Péter Bagi,
• Réka Herbay,
• Nikolett Péczka,
• Zoltán Mucsi,
• István Timári and
• György Keglevich

Beilstein J. Org. Chem. 2020, 16, 818–832, doi:10.3762/bjoc.16.75

• -phospholene oxide (8), the isomerization involves the formation of an additional stereogenic center and the corresponding 2-phospholene oxide (10) was obtained as a mixture of cis- and trans-diastereomers. The ratio of these two diastereomers was in the range of 60:40 to 55:45. The cis- and trans

• -diastereomers (cis- and trans-10) were separated by column chromatography, and they were identified by nuclear Overhauser effect (NOE) NMR spectroscopy. In the ROESY spectrum of the cis-diastereomer (cis-10), the phenyl 1H resonances give NOE/ROE crosspeaks with the C(4)H and one of the C(5)H2 1H resonances. By

• contrast, in the spectrum of trans-diastereomer (trans-10), phenyl 1H resonances give NOE/ROE crosspeaks with C(4)-methyl and the other one of the C(5)H2 1H signals (see Supporting Information File 1 for details). Thus, based on the distinctive NOE patterns of phenyl resonances, the two diastereomers (cis

Combining enyne metathesis with long-established organic transformations: a powerful strategy for the sustainable synthesis of bioactive molecules

• Valerian Dragutan,
• Ileana Dragutan,
• Albert Demonceau and
• Lionel Delaude

Beilstein J. Org. Chem. 2020, 16, 738–755, doi:10.3762/bjoc.16.68

• the cis-disubstituted double bond in the latter was performed under a high pressure of hydrogen, leading to the saturated tricyclic scaffold that was used as a key intermediate in the total synthesis of lycoflexine (15, Scheme 18). Manzamine alkaloids A highly interesting application of a metathesis

• contrast to the majority of steroids that are trans-fused, rhodexin A comprises cis-fused AB and CD rings. By carefully selecting the reaction conditions, they managed to impose this stereochemistry in all synthetic steps participating in the construction of the tetracyclic ring system of rhodexin A

Recent advances in Cu-catalyzed C(sp³)–Si and C(sp³)–B bond formation

• Balaram S. Takale,
• Ruchita R. Thakore,
• Elham Etemadi-Davan and
• Bruce H. Lipshutz

Beilstein J. Org. Chem. 2020, 16, 691–737, doi:10.3762/bjoc.16.67

• . Systematic kinetic studies using NMR experiments suggested that protonation of the intermediate 252 occurs from the sterically favored side, leading to the kinetically stable cis product (Scheme 42). Nonetheless, some epimerization under the reaction conditions took place leading to the thermodynamically

• aminosilane derivatives was prepared using this strategy to result in branched silyl compounds 272–276. The addition of Grignard-derived copper reagents was stereospecific, where cis-aziridines gave trans products (e.g., 274), and vice versa (e.g., 275). The important aspect shown here is the utility of

• formations of enantioenriched α-substituted allylic boronates take place in high yields and site-selectivity (>98% SN2′) starting with either trans- or cis-disubstituted alkenes 313, as well as linear or branched alkyl and aryl trisubstituted allylic carbonates 314. The further oxidation of the boronated

Asymmetric synthesis of CF₂-functionalized aziridines by combined strong Brønsted acid catalysis

• Xing-Fa Tan,
• Fa-Guang Zhang and
• Jun-An Ma

Beilstein J. Org. Chem. 2020, 16, 638–644, doi:10.3762/bjoc.16.60

• chiral centers, pointing at a cis-aziridination process [46]. Scaled-up experiments with model substrate 1a also proved to be feasible, delivering the chiral CF2-aziridine 4a with comparable results (Scheme 3a). The 4-methoxyphenyl group of 4a was cleaved smoothly with ceric ammonium nitrate, giving the

Synthesis of disparlure and monachalure enantiomers from 2,3-butanediacetals

• Adam Drop,
• Hubert Wojtasek and
• Bożena Frąckowiak-Wojtasek

Beilstein J. Org. Chem. 2020, 16, 616–620, doi:10.3762/bjoc.16.57

• unsymmetrically substituted cis-epoxides. The procedure was applied for the preparation of both enantiomers of disparlure and monachalure, the components of the sex pheromones of the gypsy moth (Lymantria dispar) and the nun moth (Lymantria monacha) using methyl (2S,3R,5R,6R)-3-ethylsulfanylcarbonyl-5,6-dimethoxy

• -5,6-dimethyl-1,4-dioxane-2-carboxylate as the starting material. Keywords: 2,3-butanediacetal; cis-epoxide; (−)-disparlure; (+)-disparlure; (−)-monachalure; (+)-monachalure; Introduction Compounds containing chiral epoxides display a wide range of biological activities and a number of them are

• recently developed by Mori and co-workers [6][7]. (2E)-trans-4,5-Epoxy-2-decenal is present in mammalian blood and may be used by predators to track their prey [8][9]. A classical example of cis-epoxides with semiochemical activity is the chemical communication system of the gypsy moth (Lymantria dispar

Exploring the scope of DBU-promoted amidations of 7-methoxycarbonylpterin

• Anna R. Bockman and
• Jeffrey M. Pruet

Beilstein J. Org. Chem. 2020, 16, 509–514, doi:10.3762/bjoc.16.46

• smoothly reacted affording product 9 in good yield under reaction conditions identical to those for the unhindered primary amines (5 min, 60 °C). Consistent with previous NMR studies of secondary amides, each of these were observed as a resolved mixture of the s-cis and s-trans rotamers [19]. Product 16

• obtained from N-methylbenzylamine was found to be a near 1-to-1 mixture of rotamers, while product 9 from 2-(methylamino)ethanol appeared as a 2-to-1 mixture favoring the s-cis form. Another noteworthy entry from Table 2 was methyl 2-aminomethyl-5-furanoate (for 14). As the DBU amidation relies on an

Controlling alkyne reactivity by means of a copper-catalyzed radical reaction system for the synthesis of functionalized quaternary carbons

• Goki Hirata,
• Yu Yamane,
• Naoya Tsubaki,
• Reina Hara and
• Takashi Nishikata

Beilstein J. Org. Chem. 2020, 16, 502–508, doi:10.3762/bjoc.16.45

• alkyl radicals generated from the reaction of a copper catalyst and an α-bromocarbonyl compound can undergo i) Sonogashira type couplings via an alkynyl-Cu intermediate [20], ii) cis-hydro tertiary alkylations via 1-alkenyl-Cu [21], and iii) trans-hydro tertiary alkylations via atom-transfer radical

Recent advances in photocatalyzed reactions using well-defined copper(I) complexes

• Mingbing Zhong,
• Xavier Pannecoucke,
• Philippe Jubault and
• Thomas Poisson

Beilstein J. Org. Chem. 2020, 16, 451–481, doi:10.3762/bjoc.16.42

• the best copper-based photocatalyst, Collins and co-workers reported the synthesis of a bicyclic lactone by a PCET reaction manifold (Scheme 32) [39]. Using their methodology, the authors discovered the [Cu(I)(quinitri)(xantphos)]BF4 catalyst as the best one, which afford the cis-lactone in 79

Two antibacterial and PPARα/γ-agonistic unsaturated keto fatty acids from a coral-associated actinomycete of the genus Micrococcus

• Amit Raj Sharma,
• Enjuro Harunari,
• Naoya Oku,
• Nobuyasu Matsuura,
• Agus Trianto and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2020, 16, 297–304, doi:10.3762/bjoc.16.29

• -oxo-10,12-octadecadienoic acid [31] are the plant keto fatty acids containing the dienone moiety with trans,trans-configuration, but congeners with trans,cis-configuration have not been found in nature until the present work (Figure 4). Some of the keto fatty acids of plant origin were shown to

Combination of multicomponent KA² and Pauson–Khand reactions: short synthesis of spirocyclic pyrrolocyclopentenones

• Riccardo Innocenti,
• Elena Lenci,
• Gloria Menchi and
• Andrea Trabocchi

Beilstein J. Org. Chem. 2020, 16, 200–211, doi:10.3762/bjoc.16.23

• possessing a Z geometry, as evinced by a NOE interaction between Hd and the methyl group. The cis relationship between the OH group and the pyrrolidine ring, resulting from the chemo- and stereoselective syn reduction of the carbonyl group, was evinced by NOESY-1D experiments showing intense NOE effects

The reaction of arylmethyl isocyanides and arylmethylamines with xanthate esters: a facile and unexpected synthesis of carbamothioates

• Narasimhamurthy Rajeev,
• Toreshettahally R. Swaroop,
• Ahmad I. Alrawashdeh,
• Shofiur Rahman,
• Abdullah Alodhayb,
• Seegehalli M. Anil,
• Kuppalli R. Kiran,
• Chandra,
• Paris E. Georghiou,
• Kanchugarakoppal S. Rangappa and
• Maralinganadoddi P. Sadashiva

Beilstein J. Org. Chem. 2020, 16, 159–167, doi:10.3762/bjoc.16.18

• (Table 1, method A, entry 1), was unexpectedly found to be O-benzyl benzylcarbamothioate (4a). The spectral data indicated that the product existed in cis- and trans-geometrical isomeric forms (rotamers) because of free rotation along the thioamide bond. When the same reaction was conducted in other

Potent hemithioindigo-based antimitotics photocontrol the microtubule cytoskeleton in cellulo

• Alexander Sailer,
• Franziska Ermer,
• Yvonne Kraus,
• Rebekkah Bingham,
• Ferdinand H. Lutter,
• Julia Ahlfeld and
• Oliver Thorn-Seshold

Beilstein J. Org. Chem. 2020, 16, 125–134, doi:10.3762/bjoc.16.14

• photopharmaceutical scaffold than the widely used azobenzene motif. While para-hydroxyazobenzenes feature negligibly short cis-to-trans thermal relaxation half- lives in aqueous media in the range of μs [24][25], probably making them unsuitable for robust photoswitching applications against intracellular targets

Convenient synthesis of the pentasaccharide repeating unit corresponding to the cell wall O-antigen of Escherichia albertii O4

• Tapasi Manna,
• Arin Gucchait and
• Anup Kumar Misra

Beilstein J. Org. Chem. 2020, 16, 106–110, doi:10.3762/bjoc.16.12

• as thiophilic activator. Gratifyingly, the trisaccharide derivative 12 was obtained in 74% yield with a newly formed 1,2-cis glycosyl linkage in it. The structural confirmation of compound 12 was established by its NMR spectral analysis [signals at δ 5.67 (d, J = 3.0 Hz, H-1A), 5.60 (d, J = 3.5 Hz, H

Synthesis and characterization of bis(4-amino-2-bromo-6-methoxy)azobenzene derivatives

• David Martínez-López,
• Amirhossein Babalhavaeji,
• Diego Sampedro and
• G. Andrew Woolley

Beilstein J. Org. Chem. 2019, 15, 3000–3008, doi:10.3762/bjoc.15.296

• conditions (pH < 1). While the low pKa makes the azonium form unsuitable, the neutral versions of these compounds undergo trans-to-cis photoisomerization with blue-green light and exhibit slow (τ1/2 ≈ 10 min) thermal reversion and so may find applications under physiological conditions. Keywords: azobenzene

• in an aqueous solution, it is useful as a photoswitch for the photocontrol of biomolecules [6]. It absorbs red light, undergoes trans-to-cis photoisomerization, and relaxes to the trans isomer in the dark on the timescale of seconds so that pulses of red light can be used to drive multiple

• enhanced in the NIR window [7]. Longer-wavelength absorption is achieved by compounds 2, 3, and related derivatives (Figure 1) [9]. However, the lifetime of thermal reversion of the cis isomer of 2 is only ≈1 ms at a neutral pH value, and the pKa for trans-azonium ion formation is ca. 2.6. The low pKa was

Bacterial terpene biosynthesis: challenges and opportunities for pathway engineering

• Eric J. N. Helfrich,
• Geng-Min Lin,
• Christopher A. Voigt and
• Jon Clardy

Beilstein J. Org. Chem. 2019, 15, 2889–2906, doi:10.3762/bjoc.15.283

• . Biosynthetic core enzymes of well-characterized classes of natural products, such as modular thiotemplate assembly lines (NRPSs, PKSs), are usually highly specific and produce only a few closely related natural product analogs. Adenylation domains in NRPSs [26][27][28], acyltransferase (AT) domains in cis-AT

• lines is achieved through the recombination of module series (trans-AT PKSs) [34], the exchange of large subdomains (NRPSs) [35], and the duplication followed by diversification of entire modules (NRPSs and cis-AT PKSs) [36]. As a result, dysfunctionality is a constant threat for a metabolic pathway

• thiotemplate biosynthetic pathways that enable relatively precise predictions of natural product core structures (e.g., the colinearity rule in NRPSs and cis-acyltransferase polyketide synthases [8]), no such rules exist for the predictions of the cyclic hydrocarbon backbone produced by TCs [1]. This is likely

Influence of the cis/trans configuration on the supramolecular aggregation of aryltriazoles

• Sara Tejera,
• Giada Caniglia,
• Rosa L. Dorta,
• Andrea Favero,
• Javier González-Platas and
• Jesús T. Vázquez

Beilstein J. Org. Chem. 2019, 15, 2881–2888, doi:10.3762/bjoc.15.282

• - and cis-1,2-glucopyranosyl and cyclohexyl ditriazoles, synthesized by CuAAC "click" chemistry, to form gels was studied, their physical properties determined, and the self-aggregation behavior investigated by SEM, X-ray, and EDC studies. The results revealed that self-assembly was driven mainly by π–π

• stabilization of the supramolecular aggregation of bis(4-bromophenyl)triazoles. The trans or cis spatial disposition of the triazole rings is highly important for gelation, with the cis configuration having higher propensity. Keywords: circular dichroism; cis/trans configuration; gels; triazole; X-ray

• supramolecular studies and report herein the ability of ditriazoles to form gels, their physical properties, as well as the dependence of these properties on the cis/trans relative configuration. Results and Discussion A large set of mono- and ditriazoles was synthesized using cycloaddition reactions based on

Chemical tuning of photoswitchable azobenzenes: a photopharmacological case study using nicotinic transmission

• Lorenzo Sansalone,
• Jun Zhao,
• Matthew T. Richers and
• Graham C. R. Ellis-Davies

Beilstein J. Org. Chem. 2019, 15, 2812–2821, doi:10.3762/bjoc.15.274

• properties of the tetrafluoroazobenzene (4FAB) scaffold. Ultraviolet light switching and rapid thermal relaxation of the metastable cis configuration are the main drawbacks associated with standard AB-based switches. We designed our photoprobes to take advantage of the excellent thermodynamic stability of

• the cis-4FAB configuration (thermal half-life > 12 days at 37 °C in physiological buffer) and cis–trans photostationary states above 84%. Furthermore, the well-separated n–π* absorption bands of trans- and cis-4FAB allow facile photoswitching with visible light in two optical channels. A convergent 11

• activation with cycles of violet and green light. Due to the very long-lived metastable cis configuration, 4FAB in vivo use could be of great promise for long term biological studies. Further chemical functionalization of this 4FAB probe with a maleimide functionality allowed clean cross-linking with

Photoreversible stretching of a BAPTA chelator marshalling Ca²⁺-binding in aqueous media

• Aurélien Ducrot,
• Arnaud Tron,
• Robin Bofinger,
• Ingrid Sanz Beguer,
• Jean-Luc Pozzo and
• Nathan D. McClenaghan

Beilstein J. Org. Chem. 2019, 15, 2801–2811, doi:10.3762/bjoc.15.273

• calcium upon acting on the conformation of the adjacent binding site, rendering it a stronger or weaker binder. Photoswitching was studied in pseudo-physiological conditions (pH 7.2, [KCl] = 100 mM) and dissociation constants for azobenzene cis- and trans-isomers have been determined (0.230 μM and 0.102

• cis and trans-forms [33][34]. Herein we describe a BAPTA host molecule 1, with an azobenzene moiety integrated in the tether linking both aromatic rings, as illustrated in Figure 1. The principle goal of the current work, with a long-term view of interfacing biological systems, was the development of

• differences between them, which may have consequences on the chelation, energy-minimized (PM6) structures were determined (Figure 2). The trans-form was found to be the lowest energy structure, as is generally observed for azobenzenes [37]. In the trans- versus cis-chelates the following bond lengths were

A review of asymmetric synthetic organic electrochemistry and electrocatalysis: concepts, applications, recent developments and future directions

• Munmun Ghosh,
• Valmik S. Shinde and
• Magnus Rueping

Beilstein J. Org. Chem. 2019, 15, 2710–2746, doi:10.3762/bjoc.15.264

• 2007, Feroci disclosed an electrochemical strategy for the cis-stereoselective synthesis of chiral β-lactams 180 via a 4-exo-tet cyclization of bromo amides 178 with an acidic methylene group and bearing a chiral auxiliary [101]. The cyclization occurred via deprotonation of the acidic methylene group

1,5-Phosphonium betaines from N-triflylpropiolamides, triphenylphosphane, and active methylene compounds

• Vito A. Fiore,
• Chiara Freisler and
• Gerhard Maas

Beilstein J. Org. Chem. 2019, 15, 2603–2611, doi:10.3762/bjoc.15.253

• ppm, the signal of the Z-isomers at 7.9–8.4 ppm. In all cases where both diastereoisomers were available, the known relationship 3J(P,Hcis) (in the E-isomer) < 3J(P,Htrans) [29][30] was valid; the values were in the range 20.3–30.8 Hz for the cis coupling and 38.3–46.1 Hz for the trans coupling. The

Chemical synthesis of the pentasaccharide repeating unit of the O-specific polysaccharide from Escherichia coli O132 in the form of its 2-aminoethyl glycoside

• Debasish Pal and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2019, 15, 2563–2568, doi:10.3762/bjoc.15.249

• using NIS and TMSOTf afforded the trisaccharide 10 in 78% yield. The newly formed 1,2-cis glycosidic linkage was confirmed by the peaks at 4.27 ppm (d, J1′′,2′′ = 1.5 Hz, 1H, H-1′′) in the 1H NMR and at 93.8 ppm (C-1′′) in the 13C NMR spectra. The presence of the participating O-benzoyl group at the 6-O

• -position of the donor led exclusively to the 1,2-cis glycoside [19]. Finally, the oxidative removal of the naphthyl group using DDQ [20] afforded the trisaccharide acceptor 11 in 83% yield (Scheme 2). The known galactofuranosyl derivative 12 [21] was prepared by following a literature procedure. It was

A toolbox of molecular photoswitches to modulate the CXCR3 chemokine receptor with light

• Xavier Gómez-Santacana,
• Sabrina M. de Munnik,
• Tamara A. M. Mocking,
• Niels J. Hauwert,
• Shanliang Sun,
• Prashanna Vijayachandran,
• Iwan J. P. de Esch,
• Henry F. Vischer,
• Maikel Wijtmans and
• Rob Leurs

Beilstein J. Org. Chem. 2019, 15, 2509–2523, doi:10.3762/bjoc.15.244

• used to guide the design iterations. Investigations of positional and substituent effects reveal that halogen substituents on the ortho-position of the outer ring are preferred for conferring partial agonism on the cis form of the ligands. This effect could be expanded by an electron-donating group on

• the para-position of the central ring. A variety of efficacy differences between the trans and cis forms emerges from these compounds. Tool compounds VUF15888 (4d) and VUF16620 (6e) represent more subtle efficacy switches, while VUF16216 (6f) displays the largest efficacy switch, from antagonism to

• called azo group) and depending on the wavelength of illumination, a linear trans-isomer or a bent cis-isomer can be obtained [9]. If certain biaryl moieties are replaced by an azobenzene (i.e., azologization approach), there is a relatively good chance that one of the resulting photoisomers will have a