Thiazolidinones: novel insights from microwave synthesis, computational studies, and potentially bioactive hybrids

• Luan A. Martinho,
• Victor H. J. G. Praciano,
• Guilherme D. R. Matos,
• Claudia C. Gatto and
• Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2025, 21, 2618–2636, doi:10.3762/bjoc.21.203

• of the desired products. More decisively, a single crystal X-ray analysis was performed. Compounds 3n and 4n were provided with suitable crystals for X-ray structural analysis resulting in new crystal structures, Figure 4 and Figure S250 in Supporting Information File 1, respectively. The single

Ni-promoted reductive cyclization cascade enables a total synthesis of (+)-aglacin B

• Si-Chen Yao,
• Jing-Si Cao,
• Jian Xiao,
• Ya-Wen Wang and
• Yu Peng

Beilstein J. Org. Chem. 2025, 21, 2548–2552, doi:10.3762/bjoc.21.197

• single crystals, and a corresponding X-ray diffraction analysis (inset in Scheme 3, selected H atoms have been omitted for clarity, and Table S3, Supporting Information File 1) unambiguously confirmed its precise structure with three continuous chiral centers. Conclusion In summary, the total synthesis

Insoluble methylene-bridged glycoluril dimers as sequestrants for dyes

• Suvenika Perera,
• Peter Y. Zavalij and
• Lyle Isaacs

Beilstein J. Org. Chem. 2025, 21, 2302–2314, doi:10.3762/bjoc.21.176

• methyl substituents (H2). Fortunately, the X-ray crystal structures of G2W1 and G2W3 reported below shed further light on their poor performance as solid state sequestrants. X-ray crystal structure of G2W1 and G2W3 Eventually, we were able to grow single crystals of G2W3 (CCDC 2466611) and solve their

• crystal structures by X-ray diffraction methods. Figure 5a shows a cross-eyed stereoview of one molecule of G2W3 in the crystal. Crystals of G2W3 are monoclinic with the P21/c space group (a/Å = 10.0768(9); b/Å = 13.4198(11); c/Å = 32.411(3); α/° = 90, β/° = 98.135(3), γ/° = 90). As has been observed

• substituents – provides a compelling explanation for the superior performance of H2 over G2W3 and G2W4. We were also fortunate to obtain single crystals of G2W1 (CCDC 2466610) and solve the structure by X-ray diffraction measurements. Crystals of G2W1 are triclinic with the P−1 space group (a/Å = 15.414(4); b

Thiadiazino-indole, thiadiazino-carbazole and benzothiadiazino-carbazole dioxides: synthesis, physicochemical and early ADME characterization of representatives of new tri-, tetra- and pentacyclic ring systems and their intermediates

• Gyöngyvér Pusztai,
• László Poszávácz,
• Anna Vincze,
• András Marton,
• Ahmed Qasim Abdulhussein,
• Judit Halász,
• András Dancsó,
• Gyula Simig,
• György Tibor Balogh and
• Balázs Volk

Beilstein J. Org. Chem. 2025, 21, 2220–2233, doi:10.3762/bjoc.21.169

• influenced by their tendency to form thermodynamically stable crystals since disruption of such stable structures is more challenging [37][38][39][40][41][42]. Molecules with symmetric elements and plane rings typically tend to form such stable crystals. The notable solubility difference of hydrazones 7a and

• products. 8-(2-Cyclohexylidenehydrazino)-2,4-dimethyl-2H-1,2,3-benzothiadiazine 1,1-dioxide (7e). Prepared according to the general procedure, using 5a and 6e as the starting materials. Yield: 111.0 mg (83%), yellow crystals. Mp 99–100 °C (EtOH); 1H NMR (600 MHz, DMSO-d6) δ 9.19 (br s, 1H), 7.80 (d, J

• to LC–MS). Pure (E)-7h was obtained by purification using flash chromatography (hexane–EtOAc). Yield: 45 mg (40%), colorless crystals. Mp 138–139 °C (EtOH); 1H NMR (600 MHz, DMSO-d6) δ 9.54 (br s, 1H), 7.80 (d, J = 8.6 Hz, 1H), 7.62 (m, 2H), 7.57 (m, 2H), 7.54 (m, 3H), 6.71 (d, J = 7.7 Hz, 1H), 3.47

A m-quaterphenyl probe for absolute configurational assignments of primary and secondary amines

• Yuka Takeuchi,
• Mutsumi Kobayashi,
• Yuuka Gotoh,
• Mari Ikeda,
• Yoichi Habata,
• Tomohiko Shirai and
• Shunsuke Kuwahara

Beilstein J. Org. Chem. 2025, 21, 2211–2219, doi:10.3762/bjoc.21.168

• configurations of both natural and synthetic compounds continues to pose a considerable challenge in the life and materials sciences [1]. While X-ray crystallography remains a reliable method for this purpose, the requirement for high-quality single crystals often limits its applicability. In recent years

Multicomponent reactions IV

• Thomas J. J. Müller and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2082–2084, doi:10.3762/bjoc.21.163

• Thomas J. J. Muller Valentyn A. Chebanov Heinrich-Heine-Universität Düsseldorf, Institut für Organische Chemie und Makromolekulare Chemie, Universitätsstraße 1, D-40225 Düsseldorf, Germany Institute of Functional Materials Chemistry, State Scientific Institution “Institute for Single Crystals” of

• is guest-edited by Thomas J. J. Müller (Heinrich Heine University Düsseldorf, Germany) together with Valentyn A. Chebanov (State Scientific Institution “Institute for Single Crystals” of the National Academy of Sciences of Ukraine, Kharkiv, Ukraine). The 30 contributions collected in this thematic

Switchable pathways of multicomponent heterocyclizations of 5-amino-1,2,4-triazoles with salicylaldehydes and pyruvic acid

• Yana I. Sakhno,
• Oleksander V. Buravov,
• Kostyantyn Yu. Yurkov,
• Anastasia Yu. Andryushchenko,
• Svitlana V. Shishkina and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2030–2035, doi:10.3762/bjoc.21.158

• Yana I. Sakhno Oleksander V. Buravov Kostyantyn Yu. Yurkov Anastasia Yu. Andryushchenko Svitlana V. Shishkina Valentyn A. Chebanov Institute of Functional Materials Chemistry, State Scientific Institution “Institute for Single Crystals” of National Academy of Sciences of Ukraine, Nauky Ave., 60

α-Ketoglutaric acid in Ugi reactions and Ugi/aza-Wittig tandem reactions

• Vladyslav O. Honcharov,
• Yana I. Sakhno,
• Olena H. Shvets,
• Vyacheslav E. Saraev,
• Svitlana V. Shishkina,
• Tetyana V. Shcherbakova and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2021–2029, doi:10.3762/bjoc.21.157

• Vladyslav O. Honcharov Yana I. Sakhno Olena H. Shvets Vyacheslav E. Saraev Svitlana V. Shishkina Tetyana V. Shcherbakova Valentyn A. Chebanov Institute of Functional Materials Chemistry, State Scientific Institution “Institute for Single Crystals” of National Academy of Sciences of Ukraine, Nauky

Synthesis of N-doped chiral macrocycles by regioselective palladium-catalyzed arylation

• Shuhai Qiu and
• Junzhi Liu

Beilstein J. Org. Chem. 2025, 21, 1917–1923, doi:10.3762/bjoc.21.149

• characterized by NMR spectroscopy, mass spectrometry, and X-ray crystallography. Single crystals suitable for X-ray diffraction measurements of compounds 3a, MC2, and MC3 were successfully obtained to reveal their molecular structures. In the crystal structure of 3a (Figure 2a), the two pyrene units are nearly

Stereoselective electrochemical intramolecular imino-pinacol reaction: a straightforward entry to enantiopure piperazines

• Margherita Gazzotti,
• Fabrizio Medici,
• Valerio Chiroli,
• Laura Raimondi,
• Sergio Rossi and
• Maurizio Benaglia

Beilstein J. Org. Chem. 2025, 21, 1897–1908, doi:10.3762/bjoc.21.147

• absolute configuration of the piperazine formed, a pure sample of compound 2b derived from (1R,2R)-trans-diaminocyclohexane was crystallized from a chloroform solution resulting in the formation of white crystals suitable for single crystal X-ray diffraction studies. The absolute configuration of the

Preparation of spirocyclic oxindoles by cyclisation of an oxime to a nitrone and dipolar cycloaddition

• Beth L. Ritchie,
• Alexandra Longcake and
• Iain Coldham

Beilstein J. Org. Chem. 2025, 21, 1890–1896, doi:10.3762/bjoc.21.146

• rate of evaporation from a nanolitre solution of analyte encased within oil [33], suitable single crystals were obtained. The X-ray analysis allowed the determination of the relative stereochemistry, as shown in Figure 2. Compound 5a crystallised as a racemic mixture in the space group P21/c. The major

Chiral phosphoric acid-catalyzed asymmetric synthesis of helically chiral, planarly chiral and inherently chiral molecules

• Wei Liu and
• Xiaoyu Yang

Beilstein J. Org. Chem. 2025, 21, 1864–1889, doi:10.3762/bjoc.21.145

• molecular platforms in various applications, such as circularly polarized luminescence (CPL) materials, chiral liquid crystals and asymmetric catalysis. Currently, the asymmetric catalytic synthesis of helicenes predominantly revolves around transition metal-catalyzed asymmetric annulation reactions

Systematic pore lipophilization to enhance the efficiency of an amine-based MOF catalyst in the solvent-free Knoevenagel reaction

• Pricilla Matseketsa,
• Margret Kumbirayi Ruwimbo Pagare and
• Tendai Gadzikwa

Beilstein J. Org. Chem. 2025, 21, 1854–1863, doi:10.3762/bjoc.21.144

• , it is no surprise that PSM is a prevalent method for synthesizing MOF-based catalysts [30]. On this topic, our current work was inspired by Canivet et al. who previously reported the lipophilization of a MOF by grafting long alkyl chains to the external surfaces of its crystals. The active sites are

Unique halogen–π association detected in single crystals of C–N atropisomeric N-(2-halophenyl)quinolin-2-one derivatives and the thione analogue

• Mai Uchibori,
• Nanami Murate,
• Kanako Shima,
• Tatsunori Sakagami,
• Ko Kanehisa,
• Gary James Richards,
• Akiko Hori and
• Osamu Kitagawa

Beilstein J. Org. Chem. 2025, 21, 1748–1756, doi:10.3762/bjoc.21.138

• , Shibaura Institute of Technology, 307 Fukasaku, Minuma-ku, Saitama 337-8570, Japan 10.3762/bjoc.21.138 Abstract In single crystals of C–N atropisomeric N-(2-halophenyl)quinolin-2-one and the thione analogue, a unique association based on a halogen–π interaction was detected. In racemic and optically pure

• ; single crystals; thiones; Introduction In the past several years, C–N atropisomers (C–N axially chiral compounds) owing to the rotational restriction around a C–N single bond have received great attention as new target molecules for catalytic asymmetric reactions. Highly enantioselective syntheses of

• the single crystals of racemates significantly differs from that of optically pure forms (chirality-dependent halogen bonding, Figure 1) [20][21]. That is, in crystals of racemic mebroqualone rac-I, heterochiral zig-zag polymer chains, in which (P)-I and (M)-I were alternately connected, were formed

Thermodynamics and polarity-driven properties of fluorinated cyclopropanes

• Matheus P. Freitas

Beilstein J. Org. Chem. 2025, 21, 1742–1747, doi:10.3762/bjoc.21.137

• insights can guide the prediction of molecular properties, paving the way for the design of innovative applications. Fluorinated cyclopropanes, with their unique electronic and structural characteristics, hold significant potential in the development of new drugs, advanced materials like liquid crystals

• delocalization interactions. Among the compounds shown in Figure 1, 1.2.3-c.c. is the most polar, with a calculated dipole moment of 4.17 D. Polarity is a key molecular property, as it influences solubility, lipophilicity, and various material characteristics. For example, liquid crystals used in LCD devices

• development of liquid crystals, ion carriers, and other technologies dependent on precise molecular properties. Computational Details The fluorinated cyclopropanes shown in Figure 1 were optimized using density functional theory (DFT) at the B3LYP-GD3BJ/6-311++G(d,p) level [20][21][22], which includes

Synthesis of an aza[5]helicene-incorporated macrocyclic heteroarene via oxidation of an o-phenylene-pyrrole-thiophene icosamer

• Yusuke Matsuo,
• Aoi Nakagawa,
• Shu Seki and
• Takayuki Tanaka

Beilstein J. Org. Chem. 2025, 21, 1561–1567, doi:10.3762/bjoc.21.119

• and 8.98 ppm and five doublet signals due to the heterole β-protons in the range of 6.7–5.8 ppm, along with o-phenylene protons around 7 ppm. Single crystals suitable for X-ray diffraction analysis were obtained from a mixture of acetone/n-hexane and the solid-state structure was successfully

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

• Grzegorz Mlostoń,
• Małgorzata Celeda,
• Marcin Palusiak,
• Heinz Heimgartner,
• Marta Denel-Bobrowska and
• Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

• analysis (Figure 1a and Figure 1b, respectively). Single crystals of 9i and 10i were obtained by slow evaporation from a hexane/CH2Cl2 solution and subsequently used for crystallographic X-ray measurements. In the case of 9i, the molecule is strongly disordered in the outer carbon ring regions. However

• (9a and 10m) or from MeOH (10c). Analytically pure samples of products isolated after chromatography were prepared after recrystallization from hexane/CH2Cl2 mixture. 1-Methyl-4-[2-(methylthio)adamantan-2-yl]-1,4-dihydro-1H-tetrazole-5-thione (9a): Yield 97 mg (66%), colorless crystals; mp 107‒109 °C

• . calcd for C13H20N4S2 (296.45): C, 52.67; H, 6.80; N, 18.90; S, 21.63; found: C, 52.63; H, 6.92; N, 18.81; S, 21.74. 2,2,4,4-Tetramethyl-3-[(1-methyl-1H-tetrazol-5-yl)thio]-3-(methylthio)cyclobutan-1-one (10c): Yield 120 mg (84%); colorless crystals; mp 136‒138 °C (MeOH); 1H NMR (CDCl3) δ 1.50 (s, 6H

High-pressure activation for the solvent- and catalyst-free syntheses of heterocycles, pharmaceuticals and esters

• Kelsey Plasse,
• Valerie Wright,
• Guoshu Xie,
• R. Bernadett Vlocskó,
• Alexander Lazarev and
• Béla Török

Beilstein J. Org. Chem. 2025, 21, 1374–1387, doi:10.3762/bjoc.21.102

• compounds are expected to form crystals of higher density, compared to their liquid state. However, phase transitions of the vast majority of organic compounds at high pressure are not yet adequately studied. Data on their behaviour when pressurized are not readily available, except for some long chain

Recent advances and future challenges in the bottom-up synthesis of azulene-embedded nanographenes

• Bartłomiej Pigulski

Beilstein J. Org. Chem. 2025, 21, 1272–1305, doi:10.3762/bjoc.21.99

• non-benzenoid nanographene 34 [45]. Single crystals of 34 surprisingly exhibit SHG-CD (second harmonic generation–circular dichroism) properties due to the unusual self-sorting of R and S enantiomers in the crystalline state. Scholl-type oxidation: The Scholl oxidation is a highly useful tool for

Synthetic approach to borrelidin fragments: focus on key intermediates

• Yudhi Dwi Kurniawan,
• Zetryana Puteri Tachrim,
• Teni Ernawati,
• Faris Hermawan,
• Ima Nurasiyah and
• Muhammad Alfin Sulmantara

Beilstein J. Org. Chem. 2025, 21, 1135–1160, doi:10.3762/bjoc.21.91

• LiAlH4 in ether to form alcohol 40 (89%) (Scheme 3). The primary alcohol 40 was then converted to its iodide derivative 42 (89%), from which single crystals were obtained, and its structure was determined unequivocally by XRD crystallography. Iodide 42 was then reacted with sodium phenylsulfinate in DMF

Investigations of amination reactions on an antimalarial 1,2,4-triazolo[4,3-a]pyrazine scaffold

• Henry S. T. Smith,
• Ben Giuliani,
• Kanchana Wijesekera,
• Kah Yean Lum,
• Sandra Duffy,
• Aaron Lock,
• Jonathan M. White,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2025, 21, 1126–1134, doi:10.3762/bjoc.21.90

• undescribed amine analogues 2–15 were fully characterised following 1D/2D NMR, UV, and HRMS data analyses. X-ray crystallographic analysis of crystals obtained from the aminated products 2, 7, 10, and 15 are also reported here. The new library of amine-substituted triazolopyrazines was screened against the

• with relevant position numbering. Crystals obtained for 2 were analysed by X-ray crystallographic studies and confirmed the NMR-based structure assignment. The crystal structure of 2 is shown as a thermal ellipsoid plot below (Figure 3). With a simplified approach for the synthesis of aminated

Gold extraction at the molecular level using α- and β-cyclodextrins

• Susana Santos Braga

Beilstein J. Org. Chem. 2025, 21, 1116–1125, doi:10.3762/bjoc.21.89

• expected tridimensional CD-MOF in the presence of KAuBr4 in aqueous solution. Instead, they self-assembled into unidimensional threads that aggregated into superstructures and formed, in less than one minute, needle-shaped crystals visible to the naked eye. In these crystals, the molecules of α-CD stacked

• diffraction of single crystals (Figure 3), showing, for both 1:1 and 2:1 stoichiometries, cyanoaurate anions inside the host cavity and potassium cations interacting with hydroxy groups of adjacent cyclodextrins. The strong host–guest affinity and complex stability in the solution phase has been studied by

• added to reach a final concentration of 0.25% (v/v). To better understand the role of DBC, crystals of the ternary complex β-CD·KAuBr4·DBC were obtained by slow vapor diffusion of DBC into an aqueous solution of KAuBr4 and β-CD over three days. Single-crystal diffraction showed the [AuBr4]− anion

Supramolecular assembly of hypervalent iodine macrocycles and alkali metals

• Krishna Pandey,
• Lucas X. Orton,
• Grayson Venus,
• Waseem A. Hussain,
• Toby Woods,
• Lichang Wang and
• Kyle N. Plunkett

Beilstein J. Org. Chem. 2025, 21, 1095–1103, doi:10.3762/bjoc.21.87

• further understand the complexation with metal cations, separate co-crystals of HIM 1 with LiBArF20 and NaBArF24 were obtained by vapor diffusion of diethyl ether into acetone. The details of the co-crystallization experiment are provided in the crystallographic information section of Supporting

• Information File 1. Single crystals with quality suitable for XRD analysis were obtained in both cases (Figure 5). Unlike the previous assumption of metal coordination at the macrocycle core [17], the crystal structures reveal complexation of both cations at the periphery of the macrocycle. Both 1/LiBArF20

• similar trend was seen in the HIM–Na+ crystals where complex 4 and complex 5 are similar in energy with a difference of less than 1.5 kJ/mol. While both Li+ and Na+ crystals were prepared in similar conditions, the difference in the resulting crystal structure (e.g., location of benzyl rings) could arise

Dicarboxylate recognition based on ultracycle hosts through cooperative hydrogen bonding and anion–π interactions

• Wen-Hui Mi,
• Teng-Yu Huang,
• Xu-Dong Wang,
• Yu-Fei Ao,
• Qi-Qiang Wang and
• De-Xian Wang

Beilstein J. Org. Chem. 2025, 21, 884–889, doi:10.3762/bjoc.21.72

• target ultracyclic hosts. The synthesized ultracycles were fully characterized by spectrometric and elemental analysis (Scheme 1 and Schemes S1‒S3 in Supporting Information File 1). Single crystals of B4aH were obtained by slow vapor diffusion of ethyl ether into an acetonitrile/chloroform 1:1 (v/v

Unraveling cooperative interactions between complexed ions in dual-host strategy for cesium salt separation

• Zhihua Liu,
• Ya-Zhi Chen,
• Ji Wang,
• Qingling Nie,
• Wei Zhao and
• Biao Wu

Beilstein J. Org. Chem. 2025, 21, 845–853, doi:10.3762/bjoc.21.68

• understand cooperative interactions between complexed ions, we tried to grow the crystal structure of studied salts. Fortunately, single crystals of Cs2CO3 and Cs3PO4 complexes were obtained by slow vapor diffusion from acetonitrile and diethyl ether. Notably, clearly stronger ion-dipole interactions of