Unraveling aromaticity: the dual worlds of pyrazole, pyrazoline, and 3D carborane

• Zahra Noori,
• Miquel Solà,
• Clara Viñas,
• Francesc Teixidor and
• Jordi Poater

Beilstein J. Org. Chem. 2025, 21, 412–420, doi:10.3762/bjoc.21.29

• Barcelona, Spain 10.3762/bjoc.21.29 Abstract A new series of o-carborane-fused pyrazoles has been recently successfully synthesized. This fusion was expected to create a hybrid 3D/2D aromatic system, combining the 3D aromaticity of o-carborane with the 2D aromaticity of pyrazole. However, while the boron

• the n + 1 MOs of the carborane prevents significant electronic delocalization between the two fused components. This contrasts with the fusion of pyrazole and benzene to form indazole, where both rings maintain their 2D aromaticity. Our findings demonstrate that the peripheral σ-aromaticity of

• [37]. A priori, this fusion between 3D aromatic o-carborane and 2D aromatic pyrazole should give a 3D/2D aromatic o-carborane-fused pyrazole. However, we recently demonstrated that, unlike many 2D/2D and 3D/3D aromatic fusions that retain their aromaticity, a 3D/2D aromatic combination is not feasible

Red light excitation: illuminating photocatalysis in a new spectrum

• Lucas Fortier,
• Corentin Lefebvre and
• Norbert Hoffmann

Beilstein J. Org. Chem. 2025, 21, 296–326, doi:10.3762/bjoc.21.22

Oxidation of [3]naphthylenes to cations and dications converts local paratropicity into global diatropicity

• Abel Cárdenas,
• Zexin Jin,
• Yong Ni,
• Jishan Wu,
• Yan Xia,
• Francisco Javier Ramírez and
• Juan Casado

Beilstein J. Org. Chem. 2025, 21, 277–285, doi:10.3762/bjoc.21.20

• consists of a single band at 1704 cm−1, assigned to the ν(CC)exo-CBD vibration, which moved to 1689 cm−1 in 2•+, and to 1686 cm−1 in 22+. This continuous downshift upon oxidation is in contrast to the observed upshift in 1•+ → 12+, corroborating that the fusion topology of the two molecules determines the

• and CBD. The reliability of the values is supported by the good fit between theoretical and experimental Raman spectra (see Figures S4 and S5 in Supporting Information File 1 for the calculated spectra of the oxidized species). As regarding the neutral species, fusion of these molecular groups

• , 0.13 mdyn/Å for m-2 and 0.31 mdyn/Å for m-1. These data evidence the sensitivity of the ν(CC)exo-CBD Raman band to the fusion topology. In summary, the force constant analysis tells us that the structural changes upon oxidation are largely localized in CBD for m-1 (marked by the zig-zag shift of the

Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

• Lucía Campos-Prieto,
• Aitor García-Rey,
• Eddy Sotelo and
• Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

• strategic approach allows precise control of the stereogenic centers at the C3-position during cyclization (Scheme 16). Ugi-4CR/metal-catalyzed reaction: The fusion of MCRs with cross-coupling reactions represents an attractive approach as a result of the increased intricacy and effectiveness [62]. Moreover

Cell-free protein synthesis with technical additives – expanding the parameter space of in vitro gene expression

• Tabea Bartsch,
• Stephan Lütz and
• Katrin Rosenthal

Beilstein J. Org. Chem. 2024, 20, 2242–2253, doi:10.3762/bjoc.20.192

• workflows [45]) and performance evaluation. This is convenient because product formation and even concentration can be easily quantified measuring the fluorescence intensity. To take advantage of this, fusion proteins with sfGFP can be constructed for CFPS performance evaluation [46]. Therefore, sfGFP was

• GMP-AMP (cGAMP) are part of the innate immune response in higher eukaryotes [58]. cGAMP is therefore a promising candidate for pharmaceutical applications [59]. The successful synthesis of the fusion protein of truncated human cGAS and superfolder GFP (thscGAS-sfGFP) using the in-house E. coli-based

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

• biological activity was determined for these compounds. Pestauvicomorpholine A (34) is an exceptional hybrid metabolite with fusion of a polyketide-derived resorcylic lactone and the steroid dihydroergosterol, which was isolated from the fungus Pestalotiopsis uvicola [174]. Its structure was determined by

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• utilizing Streptomyces venezuelae DHS316, developed by the same group, mediated the desosaminylation of 4 at C5 and afforded M-4365 G1 (80) in 70% yield [87]. For further oxidative modifications, they prepared the fusion proteins Tyll-RhFRED and JuvD-RhFRED, comprising P450 monooxygenases (TylI, JuvD) with

• aldehyde at the C6 sidechain. Furthermore, the fusion protein, JuvD-RhFRED, enabled regio- and diastereoselective epoxidation of the C12 double bond of macrocycles 80–82, culminating in the total synthesis of M-4365 A1 (83), M-4365 A3 (juvenimicin A4, 84), and M-4365 A2 (juvenimicin A3, 85), respectively

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• the core, the precursor is cleaved and the MT domain is presumably degraded without catalysing any further methylating reactions [98]. The OphMA fusion functions as a homodimer, with the active site of the interlocking dimers modifying the substrate peptide (Figure 7) [99]. The MT domain of OphMA is

Computation-guided scaffold exploration of 2E,6E-1,10-trans/cis-eunicellanes

• Zining Li,
• Sana Jindani,
• Volga Kojasoy,
• Teresa Ortega,
• Erin M. Marshall,
• Khalil A. Abboud,
• Sandra Loesgen,
• Dean J. Tantillo and
• Jeffrey D. Rudolf

Beilstein J. Org. Chem. 2024, 20, 1320–1326, doi:10.3762/bjoc.20.115

• natural products containing a foundational 6/10-bicyclic framework and can be divided into two main classes, cis and trans, based on the configurations of their ring fusion at C1 and C10. Previous studies on two bacterial diterpene synthases, Bnd4 and AlbS, revealed that these enzymes form cis- and trans

• family members in bacteria and plants [4], these diterpenoids have four main structural differences: the number and location of oxidized carbons, the absence or presence of transannular ether bridges, the configuration (cis or trans) of the bicyclic ring fusion, and the presence and configuration (E or Z

• Ring fusion configuration does not affect protonation-induced cyclization Our initial observation that albireticulene (2) was unstable in chloroform, resulting in two tricyclic isomers gersemienes A (5) and B (6) [7], while benditerpetriene (1) was stable [5], led us to investigate the protonation

Synthesis of indano[60]fullerene thioketone and its application in organic solar cells

• Yong-Chang Zhai,
• Shimon Oiwa,
• Shinobu Aoyagi,
• Shohei Ohno,
• Tsubasa Mikie,
• Jun-Zhuo Wang,
• Hirofumi Amada,
• Koki Yamanaka,
• Kazuhira Miwa,
• Naoyuki Imai,
• Takeshi Igarashi,
• Itaru Osaka and
• Yutaka Matsuo

Beilstein J. Org. Chem. 2024, 20, 1270–1277, doi:10.3762/bjoc.20.109

• Fusion, Resonac Corporation, 5-1 Okawa-cho, Kawasaki-ku, Kawasaki-shi, Kanagawa 210-0858, Japan Institute of Materials Innovation, Institutes for Future Society, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8603, Japan 10.3762/bjoc.20.109 Abstract Evaporable indano[60]fullerene ketone (FIDO) was

Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins

• Zhongwei Hua,
• Nan Liu and
• Xiaohui Yan

Beilstein J. Org. Chem. 2024, 20, 741–752, doi:10.3762/bjoc.20.68

• heterologous hosts. Xie et al. introduced a multigene expression vector (GjCCD4a-GjALDH2C3-GjUGT74F8-GjUGT94E13) into N. benthamiana by using the fusion and 2A polypeptides strategy and obtained a crocin yield of 78,362 ng/g (fresh weight). The content of crocin-I (2a) and crocin-II (2b) accounted for 99% of

Genome mining of labdane-related diterpenoids: Discovery of the two-enzyme pathway leading to (−)-sandaracopimaradiene in the fungus Arthrinium sacchari

• Fumito Sato,
• Terutaka Sonohara,
• Shunta Fujiki,
• Akihiro Sugawara,
• Yohei Morishita,
• Taro Ozaki and
• Teigo Asai

Beilstein J. Org. Chem. 2024, 20, 714–720, doi:10.3762/bjoc.20.65

• AsCPS synthesized copalyl diphosphate and that AsPS then converted it to (−)-sandaracopimaradiene. Since AsPS and AsCPS have distinct domain organizations from those of known fungal TCs and are likely generated through fusion or loss of catalytic domains, our findings provide insight into the evolution

• existing in their substrates. From a structural point of view, TCs consist of α, β, and γ domains in various combinations. As these TCs are assumed to be evolved by fusion and loss of domains [2][3][4], the functional analysis of terpene synthases of unique domain organization is of great significance to

• proposed to be derived from the early fusion of bacterial class I and II enzymes [3][15]. Fungal genomes contain a number of biosynthetic genes that are attractive targets for genome mining of novel natural products and biosynthetic enzymes [16][17][18]. In our research group, genome-guided exploration of

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• ). In parallel, we also expressed CMA1 in a bacterial expression system, which allowed us to ascertain whether binding was influenced by lectin glycosylation. The full-length mature protein (6–264) and individual N- or C-terminal domains were expressed using a N-terminal fusion comprising DsbC and a

• hexa-His tag, cleavable by TEV (Tobacco etch virus) protease. Despite the presence of the DsbC signal peptide, we did not observe periplasmic localization, and all proteins were instead purified from the cytoplasm. Ni-NTA affinity chromatography followed by TEV protease cleavage of the fusion construct

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• -resolution STM and AFM images, revealing the linear fusion of benzene rings with a zigzag edge (Figure 3), and their electronic properties were investigated at the single-molecule scale, with a particular attention devoted to the evolution of the HOMO–LUMO gap along the incremental series of acenes

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• solution as well as contradictory propensity to form luminescent nanostructure suspensions in hexane (Figure 5) [137]. It was posited that 65 features hollow vesicles, with vesicle fusion releasing curvature energy, leading to a thermodynamically more stable tubular structure. Such aggregation-induced

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• and HindIII sites of pHKO4 using In-Fusion (TaKaRa Bio Inc.) [20]. pTYM3a-cmaG was constructed by cloning cmaG (which was amplified by PCR using K. albida genomic DNA as the template) into the NdeI and XbaI sites of pTYM3a using In-Fusion (TaKaRa Bio Inc.). The primers used for plasmid construction

• NdeI and XhoI sites of pColdI using In-Fusion (TaKaRa Bio Inc.). The primers used for plasmid construction are listed in Table S4 of Supporting Information File 1. Each protein expression plasmid was introduced into E. coli BL21(DE3). To obtain holo-CmaA3, pACYC-sfp [21] was co-introduced with pColdI

Tying a knot between crown ethers and porphyrins

• Maksym Matviyishyn and
• Bartosz Szyszko

Beilstein J. Org. Chem. 2023, 19, 1630–1650, doi:10.3762/bjoc.19.120

• revealed a distorted ruffled molecule with a macrocycle incorporating a pyrroloindole subunit formed through the fusion between the para-phenylene ring and the pyrrolic nitrogen. 42 demonstrated fluorophore behaviour with relatively large fluorescence quantum yields of 10–20% and singlet state lifetimes of

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• mesenchymal transition of breast epithelium cell lines [33], the fusion of membranes with extracellular or intracellular vesicles [34] including neurotransmission vesicles [35]. ELs could also be used as a probe to evaluate climate change [36]. All the articles and reviews reporting the description of natural

Unravelling a trichloroacetic acid-catalyzed cascade access to benzo[f]chromeno[2,3-h]quinoxalinoporphyrins

• Chandra Sekhar Tekuri,
• Pargat Singh and
• Mahendra Nath

Beilstein J. Org. Chem. 2023, 19, 1216–1224, doi:10.3762/bjoc.19.89

• the loss in D4h symmetry after the fusion of a large benzo[f]chromeno[2,3-h]quinoxaline moiety across the porphyrinic β-positions [43], and two Q-bands at ≈562 and 603 nm (Figure 2). Further, the electronic absorpion spectra of free-base benzo[f]chromeno[2,3-h]quinoxalinoporphyrins 9–13 exhibited

• ; Zn-TMPP, Soret band at 425 nm) due to the extended π-conjugation after the fusion of the benzo[f]chromeno[2,3-h]quinoxaline moiety at the β-pyrrolic positions of the porphyrin macrocycle. In the fluorescence spectra, free-base benzo[f]chromeno[2,3-h]quinoxalinoporphyrins 9–13 showed emission bands at

Strategies to access the [5-8] bicyclic core encountered in the sesquiterpene, diterpene and sesterterpene series

• Cécile Alleman,
• Charlène Gadais,
• Laurent Legentil and
• François-Hugues Porée

Beilstein J. Org. Chem. 2023, 19, 245–281, doi:10.3762/bjoc.19.23

• backbone resulting from the fusion of a five-, six- and eight-membered ring in which the three rings share a common carbon–carbon bond. Its core structure was investigated in 2011 through the ring-closing metathesis of intermediate 83 [45]. However, the isopropenyl group seemed too hindered and the

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• like 47 and 49 actually resisted all attempts to further undergo a Diels–Alder reaction with normal dienes, even for highly reactive ones like cyclopentadiene. As a conclusion, the additional benzo-ring fusion seems to be an important factor in the swift propellane-forming reactivity of dithiin-type

Synthesis of (−)-halichonic acid and (−)-halichonic acid B

• Keith P. Reber and
• Emma L. Niner

Beilstein J. Org. Chem. 2022, 18, 1629–1635, doi:10.3762/bjoc.18.174

• coupling constant between the two methine hydrogens at the ring fusion (3J = 12.9 Hz). The rigid nature of the trans-fused 6/5 ring system results in distinct conformers for 9 and 10; fortunately, this allowed for the unambiguous assignment of the relative configurations of these diastereomers via NMR

Identification of the new prenyltransferase Ubi-297 from marine bacteria and elucidation of its substrate specificity

• Jamshid Amiri Moghaddam,
• Huijuan Guo,
• Karsten Willing,
• Thomas Wichard and
• Christine Beemelmanns

Beilstein J. Org. Chem. 2022, 18, 722–731, doi:10.3762/bjoc.18.72

• Kit (Qiagen) and PCR amplification of ubiA-297 (922 bp) and menA-1335 (952 bp) genes was carried out using S7 Fusion High-Fidelity DNA Polymerase (Biozym) and designated primer sequences (ubiA-297 forward 5’-CAGGATCCAGGATGTCCAATAAACTAATG-3’ reverse 5’-CGAAGCTTGTCTTAGGTAATGGCAAAAAG-3’; menA forward 5

Synthetic strategies toward 1,3-oxathiolane nucleoside analogues

• Umesh P. Aher,
• Dhananjai Srivastava,
• Girij P. Singh and
• Jayashree B. S

Beilstein J. Org. Chem. 2021, 17, 2680–2715, doi:10.3762/bjoc.17.182

• -(−)-enantiomer 2, exhibits potential antiviral activity against HIV-1 (EC50 = 0.009 µM) in CEM cells. However, the corresponding ᴅ-(+)-enantiomer is less active against HIV-1 (EC50 = 0.84 µM) [15]. The fusion of an appropriate sugar element, carbacycle, or heterocyclic equivalent with an activated base results