Efficient solid-phase synthesis and structural characterization of segetalins A–H, J and K

• Liangyu Liu,
• Wanqiu Lu,
• Quanping Guo and
• Zhaoqing Xu

Beilstein J. Org. Chem. 2025, 21, 2612–2617, doi:10.3762/bjoc.21.202

• strategy for the total synthesis of segetalins A–H, J and K (1–10), bioactive cyclopeptides isolated from Vaccaria segetalis. Linear precursors were assembled on cost-effective 2-chlorotrityl chloride resin via Fmoc-SPPS, followed by PyBOP-mediated head-to-tail cyclization in DMF (10−3 M). After RP-HPLC

• purification, all cyclopeptides were obtained in 45–70% isolated yields. Structural identities were confirmed by HRESIMS, NMR, and HPLC (>95% purity). Circular dichroism (CD) spectroscopy revealed distinct secondary structures, including β-sheets (1, 2, 3, 4, 7, 8, 10) and α-helical elements (5, 6). This

• RP-HPLC. This optimized protocol afforded segetalins A–H, J and K (1–10) with 45% to 70% isolated yields (Figure 1). Structural characterization The synthetic compounds 1–10 were rigorously characterized to confirm their identity and purity (see Supporting Information File 1). High-resolution

Isoorotamide-based peptide nucleic acid nucleobases with extended linkers aimed at distal base recognition of adenosine in double helical RNA

• Grant D. Walby,
• Brandon R. Tessier,
• Tristan L. Mabee,
• Jennah M. Hoke,
• Hallie M. Bleam,
• Angelina Giglio-Tos,
• Emily E. Harding,
• Vladislavs Baskevics,
• Martins Katkevics,
• Eriks Rozners and
• James A. MacKay

Beilstein J. Org. Chem. 2025, 21, 2513–2523, doi:10.3762/bjoc.21.193

• reversed-phase HPLC, these PNAs were studied against model RNA hairpins containing a purine-rich 5’-end and a variable base pair, Y–Z (Figure 6). The expected matched HRP1 (Y = U; Z = A) was designed to test affinity for the newly prepared Db nucleobases and mismatched HRP2–HRP4 were utilized to test

Comparative analysis of complanadine A total syntheses

• Reem Al-Ahmad and
• Mingji Dai

Beilstein J. Org. Chem. 2025, 21, 2334–2344, doi:10.3762/bjoc.21.178

• with MeI in presence of benzyltrimethylammonium fluoride (BTAF). At this stage, to prepare optically active natural product, the racemic mixture of 51 was separated using chiral HPLC to afford (+)-51 and (−)-51, which were used to prepare both enantiomers of complanadine A for biological evaluations

Recent advances in Norrish–Yang cyclization and dicarbonyl photoredox reactions for natural product synthesis

• Peng-Xi Luo,
• Jin-Xuan Yang,
• Shao-Min Fu and
• Bo Liu

Beilstein J. Org. Chem. 2025, 21, 2315–2333, doi:10.3762/bjoc.21.177

• phenol delivered 1,2-naphthoquinone 106. Notably, enantiomer (−)-106 could be prepared from (+)-105, which was in turn obtained by preparative HPLC on a chiral stationary phase from (±)-105. Following extensive screening, it was found that photoirradiation of quinone (−)-106 under the optimized

A chiral LC–MS strategy for stereochemical assignment of natural products sharing a 3-methylpent-4-en-2-ol moiety in their terminal structures

• Rei Suo,
• Raku Irie,
• Hinako Nakayama,
• Yuta Ishimaru,
• Yuya Akama,
• Masato Oikawa and
• Shiro Itoi

Beilstein J. Org. Chem. 2025, 21, 2243–2249, doi:10.3762/bjoc.21.171

• -hydroxy-2-methylbutanoate (3) [25][26]. We then explored LC–MS conditions for their separation. In our initial trial, the stereoisomeric mixture of 3 was successfully separated by preparative high performance liquid chromatography (HPLC) using a chiral column (data not shown). However, each stereoisomer

• chiral HPLC columns and with various elution profiles, the four stereoisomers of 6 were successfully separated on a CHIRALPAK ID-3 column at 40 °C with aqueous MeOH gradient elution (Figure S3, Supporting Information File 1). The developed method for absolute configuration assignment of MPO was applied

• followed by ozonolysis to generate 3-((4-bromobenzoyl)oxy)-2-methylbutanoic acid. The four stereoisomers of this fragment were prepared through two separate Evans aldol reactions, each affording a pair of diastereomers. The final four stereoisomers were resolved by chiral HPLC (CHIRALPAK IA column with

Thiadiazino-indole, thiadiazino-carbazole and benzothiadiazino-carbazole dioxides: synthesis, physicochemical and early ADME characterization of representatives of new tri-, tetra- and pentacyclic ring systems and their intermediates

• Gyöngyvér Pusztai,
• László Poszávácz,
• Anna Vincze,
• András Marton,
• Ahmed Qasim Abdulhussein,
• Judit Halász,
• András Dancsó,
• Gyula Simig,
• György Tibor Balogh and
• Balázs Volk

Beilstein J. Org. Chem. 2025, 21, 2220–2233, doi:10.3762/bjoc.21.169

• ), CCDC 2447635 [(E)-7a], CCDC 2447644 (7b), CCDC 2447641 (7d), CCDC 2447634 (7e), CCDC 2447643 [(E)-7f], CCDC 2447642 [(Z)-7h], CCDC 2447640 (7i) and CCDC 2447637 [(E)-9a]. All solvents used in the pharmacokinetic characterization and for HPLC measurements were of analytical grade, purchased from Merck

• during HPLC analysis. In vitro gastrointestinal permeability assay. For in vitro GI PAMPA permeability studies, only compounds with a kinetic solubility higher than 10 µM were chosen. Like in the kinetic solubility assay, 5 μL of DMSO stock solutions was pipetted into a 96-well plate containing 495 μL

• at 37 °C for 4 hours. Then samples were taken from the donor and acceptor wells and analyzed along with the initial solutions by HPLC. Effective permeability and membrane retention were calculated with Equation 1 and Equation 2 as suggested by Avdeef [48]: where A is the filter area (0.24 cm2), t is

Discovery of cytotoxic indolo[1,2-c]quinazoline derivatives through scaffold-based design

• Daniil V. Khabarov,
• Valeria A. Litvinova,
• Lyubov G. Dezhenkova,
• Dmitry N. Kaluzhny,
• Alexander S. Tikhomirov and
• Andrey E. Shchekotikhin

Beilstein J. Org. Chem. 2025, 21, 2062–2071, doi:10.3762/bjoc.21.161

• a series of 6-aminomethyl-substituted indoloquinazoline derivatives 14а–d (Scheme 5). The structures of all compounds were analyzed and confirmed by NMR and HRMS methods. Samples of all indolo[1,2-c]quinazoline derivatives with good analytical purity (HPLC, ≥95%) were further subjected to biological

Aryl iodane-induced cascade arylation–1,2-silyl shift–heterocyclization of propargylsilanes under copper catalysis

• Rasma Kroņkalne,
• Rūdolfs Beļaunieks,
• Armands Sebris,
• Anatoly Mishnev and
• Māris Turks

Beilstein J. Org. Chem. 2025, 21, 1984–1994, doi:10.3762/bjoc.21.154

• and 17). The obtained diene 10a contained 13–15% of silylindene 11a as impurity. Products 10a and 11a are separable by preparative HPLC. Lowering the starting material concentration in the reaction mixture to 0.05 mmol/mL significantly decreased the diene 10a yield due to the formation of other

Rhodium-catalysed connective synthesis of diverse reactive probes bearing S(VI) electrophilic warheads

• Scott Rice,
• Julian Chesti,
• William R. T. Mosedale,
• Megan H. Wright,
• Stephen P. Marsden,
• Terry K. Smith and
• Adam Nelson

Beilstein J. Org. Chem. 2025, 21, 1924–1931, doi:10.3762/bjoc.21.150

• diverse co-substrates. A high-throughput approach was used to identify promising substrate/co-substrate/catalyst combinations which were then prioritised for purification by mass-directed HPLC to yield a total of thirty reactive probes. The structural diversity of the probe set was increased by the

• products observed by analytical HPLC. Structures and structure elucidation of intermolecular reaction products. The relevant reactivity modes are indicated by colour: O–H insertion (green); N–H insertion (blue); formal C–H insertion (yellow); and cyclopropanation (pink). Synthesis of α-diazoamide

Synthesis of N-doped chiral macrocycles by regioselective palladium-catalyzed arylation

• Shuhai Qiu and
• Junzhi Liu

Beilstein J. Org. Chem. 2025, 21, 1917–1923, doi:10.3762/bjoc.21.149

• yields (ΦF up to 0.69). Furthermore, enantiomeric resolution of inherent chiral MC1 was achieved using preparative chiral HPLC, enabling detailed investigation of its chiroptical behavior through circular dichroism and circularly polarized luminescence spectroscopy. Keywords: dihydroindolocarbazole

• existence of inherent chirality for both MC1 and MC3, chiral resolutions using chiral high-performance liquid chromatography (HPLC) were performed. Due to insufficient solubility, MC3 failed in chiral separation via preparative chiral columns. Fortunately, two enantiomers of MC1 were successfully isolated

Unique halogen–π association detected in single crystals of C–N atropisomeric N-(2-halophenyl)quinolin-2-one derivatives and the thione analogue

• Mai Uchibori,
• Nanami Murate,
• Kanako Shima,
• Tatsunori Sakagami,
• Ko Kanehisa,
• Gary James Richards,
• Akiko Hori and
• Osamu Kitagawa

Beilstein J. Org. Chem. 2025, 21, 1748–1756, doi:10.3762/bjoc.21.138

• their spectral data, copies of 1H and 13C{1H} NMR charts of compounds 1–4, chiral MPLC and HPLC chart in compounds 1a,b, 2a, evaluation of rotational barriers of compounds 1a,b, and X-ray crystal data of rac-1a,b, (P)-1a,b, rac-2a (check CIF). Funding This work was partly supported by JSPS KAKENHI (C

Preparation of a furfural-derived enantioenriched vinyloxazoline building block and exploring its reactivity

• Madara Darzina,
• Anna Lielpetere and
• Aigars Jirgensons

Beilstein J. Org. Chem. 2025, 21, 1737–1741, doi:10.3762/bjoc.21.136

• chiral HPLC. This confirmed that no erosion of enantiomeric purity had happened during the deprotection stage. With the enantioenriched vinyloxazoline S-6 in hand, we explored the reaction scope involving its electron-deficient double bond. Unfortunately, the olefin appeared unreactive or gave a mixture

Convenient alternative synthesis of the Malassezia-derived virulence factor malassezione and related compounds

• Karu Ramesh and
• Stephen L. Bearne

Beilstein J. Org. Chem. 2025, 21, 1730–1736, doi:10.3762/bjoc.21.135

• nitrogen source followed by thin-layer chromatography and reversed-phase (RP)-HPLC to isolate and purify the compound from a complex mixture of indole alkaloids [11], (ii) prepared by aerobic incubation of indole-3-pyruvic acid at pH 7.4, 37 °C for 24 h followed by isolation and purification using RP-HPLC

Continuous-flow-enabled intensification in nitration processes: a review of technological developments and practical applications over the past decade

• Feng Zhou,
• Chuansong Duanmu,
• Yanxing Li,
• Jin Li,
• Haiqing Xu,
• Pan Wang and
• Kai Zhu

Beilstein J. Org. Chem. 2025, 21, 1678–1699, doi:10.3762/bjoc.21.132

• critical passivation thresholds, necessitating rigorous evaluation of 316L material's corrosion susceptibility under such dynamic operating conditions. The feeding zone of a continuous-flow nitration system typically comprises precision fluid-handling equipment including HPLC pumps, peristaltic pumps, or

• syringe pumps. The selection criteria must account for operational pressure thresholds, reagent rheological properties (e.g., viscosity), and required flow regimes. A representative challenge arises when handling high-viscosity nitration agents like the HNO3/H2SO4 binary acid system for which HPLC pumps

Synthesis of optically active folded cyclic dimers and trimers

• Ena Kumamoto,
• Kana Ogawa,
• Kazunori Okamoto and
• Yasuhiro Morisaki

Beilstein J. Org. Chem. 2025, 21, 1603–1612, doi:10.3762/bjoc.21.124

• simple SiO2 column chromatography. In addition, they were purified using a recyclable high-performance liquid chromatography (HPLC) to remove unidentified impurities to obtain (Sp)-6 and (Sp)-7 in 16% and 3% isolated yields, respectively. The ultraviolet–visible (UV–vis) absorption spectra and normalized

• standard. Analytical thin-layer chromatography (TLC) was performed with silica gel 60 Merck F254 plates. Column chromatography was performed with silica gel 60N (spherical neutral). Recyclable preparative high-performance liquid chromatography (HPLC) was carried out on a Japan Analytical Industry Model

• LC918R (JAIGEL 1H and 2H gel-permeation columns) using CH2Cl2 as an eluent. Recyclable chiral chromatography (HPLC) was carried out on a YMC LC Forte/R (Chiralpak® IA column). High-resolution mass spectra (HRMS) was obtained on a Bruker Daltonics microTOF II spectrometer (APCI) by using sodium formate

pH-Controlled isomerization kinetics of ortho-disubstituted benzamidines: E/Z isomerism and axial chirality

• Ryota Kimura,
• Satoshi Ichikawa and
• Akira Katsuyama

Beilstein J. Org. Chem. 2025, 21, 1568–1576, doi:10.3762/bjoc.21.120

• liquid chromatography (RP-HPLC) using an acidic mobile phase [H2O (0.1% CF3CO2H)/MeCN 72:28]. As shown in Figure 4, the HPLC analysis of amidine 2 showed two peaks corresponding to the E and Z isomers which could be explained by the existence of E/Z isomers of amidine 2 trifluoroacetate salt. After

• separation of the two peaks, HPLC analysis of each separated component showed single peaks, suggesting that the E and Z isomers of amidine 2 trifluoroacetate salt could be separated by standard RP-HPLC. The configuration of the amidine moiety of each component was characterized by NOE experiments (for

• details, see Supporting Information File 1). The NMR and HPLC experiments clearly indicate that protonation of the amidine moiety increases the rotational barrier of the C–N bond, a result which is consistent with our DFT study. Since it was found that the E/Z isomers of amidine could be isolated as a TFA

Wittig reaction of cyclobisbiphenylenecarbonyl

• Taito Moribe,
• Junichiro Hirano,
• Hideaki Takano,
• Hiroshi Shinokubo and
• Norihito Fukui

Beilstein J. Org. Chem. 2025, 21, 1454–1461, doi:10.3762/bjoc.21.107

• and rac-5 was conducted using high-performance liquid chromatography (HPLC) equipped with DAICEL CHIRALPAK IE as the chiral stationary phase (eluent: CH2Cl2/hexane 3:2 for 3 and 1:9 for 5). The absolute configurations of the enantiomers were determined by transformation of enantiomerically pure CBBC

Tautomerism and switching in 7-hydroxy-8-(azophenyl)quinoline and similar compounds

• Lidia Zaharieva,
• Vera Deneva,
• Fadhil S. Kamounah,
• Nikolay Vassilev,
• Ivan Angelov,
• Michael Pittelkow and
• Liudmil Antonov

Beilstein J. Org. Chem. 2025, 21, 1404–1421, doi:10.3762/bjoc.21.105

• Fluorochem and used as received. The solvents used for the experimental synthesis (HPLC grade) were purchased from Sigma-Aldrich. All other materials were commercial products of analytical grade and used as supplied. Analytical TLC (thin-layer chromatography) was performed on Merck silica gel 60 F254

N-Salicyl-amino acid derivatives with antiparasitic activity from Pseudomonas sp. UIAU-6B

• Joy E. Rajakulendran,
• Emmanuel Tope Oluwabusola,
• Michela Cerone,
• Terry K. Smith,
• Olusoji O. Adebisi,
• Adefolalu Adedotun,
• Gagan Preet,
• Sylvia Soldatou,
• Hai Deng,
• Rainer Ebel and
• Marcel Jaspars

Beilstein J. Org. Chem. 2025, 21, 1388–1396, doi:10.3762/bjoc.21.103

• purification by a reversed-phase high pressure liquid chromatography (HPLC) system which led to the isolation of four compounds, trivially named pseudomonins D–G (1–4) and three known compounds 5–7 (Figure 1). Compound 1 was isolated as a yellow oil. The molecular formula C11H13NO5 (Δ: −0.7 ppm, 6 degrees of

• by HPLC with a wavelength monitored at 340 nm of the derivatized amino acid residuals in the hydrolysate and threonine standards (see Supporting Information File 1, Figure S24). Compound 3 was isolated as a yellow oil. Its molecular formula of C11H11NO4 (Δ: −0.3 ppm, calcd. for C11H10NO4, 220.0615

• to an HPLC (Agilent 1290 Infinity equipped with a diode array detector) on a Phenomenex analytical C18 column (2.5 µm, 100 Å, 4.6 × 150 mm). Samples were eluted with a starting mobile phase of 5% acetonitrile (MeCN):95% H2O (0.1% formic acid), followed by a gradient of up to 100% MeCN for 15 min at a

Oxetanes: formation, reactivity and total syntheses of natural products

• Peter Gabko,
• Martin Kalník and
• Maroš Bella

Beilstein J. Org. Chem. 2025, 21, 1324–1373, doi:10.3762/bjoc.21.101

Selective monoformylation of naphthalene-fused propellanes for methylene-alternating copolymers

• Kenichi Kato,
• Tatsuki Hiroi,
• Seina Okada,
• Shunsuke Ohtani and
• Tomoki Ogoshi

Beilstein J. Org. Chem. 2025, 21, 1183–1191, doi:10.3762/bjoc.21.95

• copolymers.a Supporting Information Supporting information includes general information, synthetic procedures and compound data, NMR and MS spectra, HPLC charts, and results of PXRD, DSC, TGA, gas adsorption, and theoretical calculations. Supporting Information File 2: Experimental. Acknowledgements The

Synthetic approach to borrelidin fragments: focus on key intermediates

• Yudhi Dwi Kurniawan,
• Zetryana Puteri Tachrim,
• Teni Ernawati,
• Faris Hermawan,
• Ima Nurasiyah and
• Muhammad Alfin Sulmantara

Beilstein J. Org. Chem. 2025, 21, 1135–1160, doi:10.3762/bjoc.21.91

• alcohols, 34 and ent-34, after recrystallization from hot hexane (100% ee by chiral phase HPLC, yield not reported). These alcohols were then treated with triphenylphosphine and iodine in the presence of imidazole to yield the iodides 35 and ent-35 (Scheme 2). The iodide intermediates were subsequently

• with vinyl acetate as the acylating agent, Amano lipase AK (AKL) was identified as the most effective biocatalyst for achieving selective acetylation, converting diol 28 to the monoacetate 37 in 91% yield with >99.4% de (by HPLC). The diacetate byproduct 39 was formed in a small amount (9%). A similar

• % yield over three steps. This compound was isolated in its pure form as a white solid after recrystallization from ethanol, confirmed by HPLC and NMR. In parallel, the primary alcohol group of ent-38 was protected as a TBDMS ether, and the acetate group was converted to a tosyl ester by hydrolyzing the

Investigations of amination reactions on an antimalarial 1,2,4-triazolo[4,3-a]pyrazine scaffold

• Henry S. T. Smith,
• Ben Giuliani,
• Kanchana Wijesekera,
• Kah Yean Lum,
• Sandra Duffy,
• Aaron Lock,
• Jonathan M. White,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2025, 21, 1126–1134, doi:10.3762/bjoc.21.90

• good yield with this straightforward methodology (and without the need for toluene reflux), and to determine the distribution of products obtained for this synthetic approach, by exhaustive analysis of reaction mixtures by HPLC, MS and NMR. Ultimately, 14 aminated derivatives of 5-chloro-3-(4

• -chlorophenyl)-[1,2,4]triazolo[4,3-a]pyrazine were synthesised, purified (≥95% purity, determined by 1H and 13C NMR and HPLC–MS analysis) and assayed for in vitro antimalarial activity. Results and Discussion Synthesis of aminated triazolopyrazine analogues The amination of 5-chloro-3-(4-chlorophenyl)-[1,2,4

• column chromatography (and additionally by HPLC for the toluene reaction), the reactions also gave comparable yields of compound 2 (70% for toluene/silica and 82% for only phenethylamine at room temperature). Only the tele-substituted product was observed in either reaction mixture, consistent with

Salen–scandium(III) complex-catalyzed asymmetric (3 + 2) annulation of aziridines and aldehydes

• Linqiang Wang and
• Jiaxi Xu

Beilstein J. Org. Chem. 2025, 21, 1087–1094, doi:10.3762/bjoc.21.86

• excesses were determined using chiral HPLC analysis using an Agilent 1260 LC instrument (Santa Clara, CA, USA) with Daicel Chiralcel AD-H column (Hyderabad, India) with a mixture of isopropyl alcohol and hexane as eluents. All liquid aldehydes were washed with saturated aqueous sodium bicarbonate solution

• afford the pure product 3. The enantiomeric excess was determined using chiral HPLC analysis with a mixture of iPrOH and hexane as eluent. Oxazolidine-containing bioactive compounds. Asymmetric catalytic synthetic methods of oxazolidine derivatives. Scope of aziridines and aldehydes. Proposed reaction

Pd-Catalyzed asymmetric allylic amination with isatin using a P,olefin-type chiral ligand with C–N bond axial chirality

• Natsume Akimoto,
• Kaho Takaya,
• Yoshio Kasashima,
• Kohei Watanabe,
• Yasushi Yoshida and
• Takashi Mino

Beilstein J. Org. Chem. 2025, 21, 1018–1023, doi:10.3762/bjoc.21.83

• reaction with nucleophilic lithium amide from n-propylamine, the reduction of phosphine oxide 9 by trichlorosilane/triethylamine, and the N-acylation of 10 with cinnamoyl chloride in three steps (Scheme 1). We also analyzed amide compound 7 by HPLC analysis using a chiral stationary phase column with a CD

• detector and found that the C(aryl)–N(amide) bond axial chirality exists in amide compound 7. We attempted the optical resolution of racemic compound (±)-7 and obtained (+)-7 and (−)-7 using a semi-preparative chiral HPLC on 50 milligram scales. We also investigated the racemization process associated with

• steps from phosphine oxide 8. Chiral HPLC analysis confirmed its axial chirality at the C(aryl)–N(amide) bond. The optical resolution of (±)-7 yielded (+)-7 and (−)-7. The racemization barrier of (−)-7 in n-dodecane was determined to be 25.0 kcal/mol at 25 °C, with a half-life of approximately 1.3 days