Selective monoformylation of naphthalene-fused propellanes for methylene-alternating copolymers

• Kenichi Kato,
• Tatsuki Hiroi,
• Seina Okada,
• Shunsuke Ohtani and
• Tomoki Ogoshi

Beilstein J. Org. Chem. 2025, 21, 1183–1191, doi:10.3762/bjoc.21.95

• ], [4.3.3]_Br and [4.3.3]_2Br. To gain insight into the different reactivity between [3.3.3] and [4.3.3], theoretical calculations were performed at the ωB97X-D/6-31G(d,p) level of theory (Figures S901–S903 in Supporting Information File 1). Although distribution of the highest occupied molecular orbitals

Enhancing chemical synthesis planning: automated quantum mechanics-based regioselectivity prediction for C–H activation with directing groups

• Julius Seumer,
• Nicolai Ree and
• Jan H. Jensen

Beilstein J. Org. Chem. 2025, 21, 1171–1182, doi:10.3762/bjoc.21.94

• C–H bond. Example of combinations of C–H bonds and DGs that are considered identical because of symmetry of the DG. Example of combinations of C–H bonds and DGs that are considered identical because of resonance structures of the DG. A: Distribution of correct (green) and wrong (red) predictions for

• black cross. B: Distribution of correct (green), semi-correct (yellow), and wrong (red) predictions for the same molecules, evaluated with an energy threshold of 1.0 kcal·mol−1. Molecules with five potential reaction sites that are predicted wrong by the QM workflow. The experimentally observed and

A multicomponent reaction-initiated synthesis of imidazopyridine-fused isoquinolinones

• Ashutosh Nath,
• John Mark Awad and
• Wei Zhang

Beilstein J. Org. Chem. 2025, 21, 1161–1169, doi:10.3762/bjoc.21.92

• . A comprehensive DFT investigation of reactant 6 was carried out to analyze the transition state of the IMDA reaction for a Br-substituted diene and its charge distribution (Figure 2). The diene has a notable positive charge (+0.318, +0.098, 6a), (+0.334, +0.082, 6h) and (+0.316, +0.074, 6r) whereas

Investigations of amination reactions on an antimalarial 1,2,4-triazolo[4,3-a]pyrazine scaffold

• Henry S. T. Smith,
• Ben Giuliani,
• Kanchana Wijesekera,
• Kah Yean Lum,
• Sandra Duffy,
• Aaron Lock,
• Jonathan M. White,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2025, 21, 1126–1134, doi:10.3762/bjoc.21.90

• good yield with this straightforward methodology (and without the need for toluene reflux), and to determine the distribution of products obtained for this synthetic approach, by exhaustive analysis of reaction mixtures by HPLC, MS and NMR. Ultimately, 14 aminated derivatives of 5-chloro-3-(4

Supramolecular assembly of hypervalent iodine macrocycles and alkali metals

• Krishna Pandey,
• Lucas X. Orton,
• Grayson Venus,
• Waseem A. Hussain,
• Toby Woods,
• Lichang Wang and
• Kyle N. Plunkett

Beilstein J. Org. Chem. 2025, 21, 1095–1103, doi:10.3762/bjoc.21.87

• macrocycle’s cavity, we considered the charge distribution on three iodine atoms, three carbonyl carbon atoms and six oxygen atoms that constitute a small cavity within the macrocycle. The Mulliken charge distribution diagram of HIM 1 (Figure 3, middle) shows that the summation of the overall charge on three

• curcumscribe the small cyclic core represented by blue color. Three carbonyl amides project outward. B) DFT image of 1 displaying the distribution of Mulliken charges on iodine (purple), oxygen (red), and carbon (grey); benzyl groups are ommited for clarity. C) Calculated electrostatic potential map showing

On the photoluminescence in triarylmethyl-centered mono-, di-, and multiradicals

• Daniel Straub,
• Markus Gross,
• Mona E. Arnold,
• Julia Zolg and
• Alexander J. C. Kuehne

Beilstein J. Org. Chem. 2025, 21, 964–998, doi:10.3762/bjoc.21.80

• change from the D3 symmetry as observed in TTM to a C2 symmetry in the orbital distribution in the ground state. In spite of this break in symmetry to C2 – where all relevant transitions will be allowed – an enhancement of the respective absorption bands or an improvement in the ϕ has not been observed

• . However, one can observe a loss of the vibronic features in the fluorescence signal, indicating that the emission occurs from a CT state, in agreement with the DFT orbital distribution in the ground state geometry (see Figure 2e for different orbital location in HDMO and SOMO). Interestingly, successive

• -shaped distribution for ϕ. The bathochromic shift in λem has previously been described to result from the better stabilization of the CT excited state for stronger donors, and therefore a stabilization of the highest occupied molecular orbital (HOMO) when only considering the acceptor moiety (see also

Study of tribenzo[b,d,f]azepine as donor in D–A photocatalysts

• Katy Medrano-Uribe,
• Jorge Humbrías-Martín and
• Luca Dell’Amico

Beilstein J. Org. Chem. 2025, 21, 935–944, doi:10.3762/bjoc.21.76

• density distribution in the charge transfer (CT) excited state is facilitated by the presence of an electron-rich moiety and an electron-poor part in the same molecule, increasing the lifetime in the excited state. One of the representative classes of molecules demonstrating dual use in materials

• 5a (3.9 eV) as a consequence of the extended π conjugation compared with 4a and 6a (4.4 and 4.4 eV, respectively). Interestingly, compound 6a, which possesses the weakest sulfur-based acceptor, showed an inversion in the LUMO distribution, localizing it in the TBA core – this behavior of the named

Substituent effects in N-acetylated phenylazopyrazole photoswitches

• Radek Tovtik,
• Dennis Marzin,
• Pia Weigel,
• Stefano Crespi and
• Nadja A. Simeth

Beilstein J. Org. Chem. 2025, 21, 830–838, doi:10.3762/bjoc.21.66

• photostationary distribution (PSD) of the initial dark state could not be fully regenerated by photochemical means for all 33 PAPs (vide infra, ex-situ NMR measurements and thermal half-lifes). The recyclability of NH-PAPs was previously studied by Rustler et al. by altered irradiation with 365 and 420 or 455 nm

• 1H NMR spectrum. We compared these results to simply estimating the isomer distribution at the PSS (cf. Supporting Information File 1, section 3.1) from the UV–vis spectra and observed good agreement, meaning the results from UV–vis spectroscopy can be used for rough PSD estimation, due to good

• distribution of 98% Z by UV–vis and 96% Z by 1H NMR. EWGs, such as NAc-PAP-CF3, on the other hand, showed a lower PSD for the Z isomer of 83% by both UV–vis and 1H NMR spectroscopy. For NMe- and NAc-PAPs, we observed increased Z content to almost quantitative photoisomerization after 365 nm illumination for

4-(1-Methylamino)ethylidene-1,5-disubstituted pyrrolidine-2,3-diones: synthesis, anti-inflammatory effect and in silico approaches

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Luc Van Meervelt,
• Do Thi Thao and
• Nguyen Minh Thong

Beilstein J. Org. Chem. 2025, 21, 817–829, doi:10.3762/bjoc.21.65

• interactions of these derivatives with the enzyme inducible nitric oxide synthase (iNOS), compared to dexamethasone used as a reference. Furthermore, ADMET (absorption, distribution, metabolism, excretion, and toxicity) predictions were performed to assess their drug-likeness and pharmacokinetic properties

• prediction of drug-like properties, in silico evaluations of ADMET (absorption, distribution, metabolism, excretion, and toxicity) characteristics of all potential drug candidates were conducted using the pkCSM online tool [28]. The resulting data are presented in Table 3. The absorption capability of the

• excellent when it falls within the range of 70% to 100% [29]. The data in Table 3 indicate that all studied compounds exhibit substantial absorption within the human intestines. In terms of distribution, key factors influencing the distribution of the compounds comprise the volume of distribution at steady

Photocatalyzed elaboration of antibody-based bioconjugates

• Marine Le Stum,
• Eugénie Romero and
• Gary A. Molander

Beilstein J. Org. Chem. 2025, 21, 616–629, doi:10.3762/bjoc.21.49

• stability, and/or a shorter ADC half-life [14]. Optimization of the drug/antibody ratio (DAR) and payload distribution/location thus becomes significant for ideal ADC design. Given the complexity of biological macromolecules, there are inherent limitations in terms of the types of reactions that can be used

Beyond symmetric self-assembly and effective molarity: unlocking functional enzyme mimics with robust organic cages

• Keith G. Andrews

Beilstein J. Org. Chem. 2025, 21, 421–443, doi:10.3762/bjoc.21.30

• transform the ligands can result in changes in cage topology distribution [204]. Self-assembly can also prescribe limitations on the symmetry of cages [36]. Notably, Clever has recently reported the first Pd2(ABCD) MOC [205], which may signal the possibility of using low-symmetry cavities [206][207][208

• ]. In this approach, symmetric topologies undergo a natural symmetry-lowering process when the restricted angles possible in a polymacrocycle environment lead to non-symmetric conformations in the pursuit of equal strain distribution. In the case of cage 3e, the mixed pyridyl/aryl system results in a

Antibiofilm and cytotoxic metabolites from the entomopathogenic fungus Samsoniella aurantia

• Rita Toshe,
• Syeda J. Khalid,
• Blondelle Matio Kemkuignou,
• Esteban Charria-Girón,
• Paul Eckhardt,
• Birthe Sandargo,
• Kunlapat Nuchthien,
• J. Jennifer Luangsa-ard,
• Till Opatz,
• Hedda Schrey,
• Sherif S. Ebada and
• Marc Stadler

Beilstein J. Org. Chem. 2025, 21, 327–339, doi:10.3762/bjoc.21.23

• the samples and the control group was assessed through a two-tailed Student's t-test. The level of statistical significance was set at p < 0.05. The examination was conducted utilizing GraphPad Prism 9® (GraphPad Software, San Diego, CA, USA). Computational details The distribution of conformers was

Red light excitation: illuminating photocatalysis in a new spectrum

• Lucas Fortier,
• Corentin Lefebvre and
• Norbert Hoffmann

Beilstein J. Org. Chem. 2025, 21, 296–326, doi:10.3762/bjoc.21.22

• reaction. One of the most significant advantages is the superior light penetration of near-infrared light, which can reach deeper into the reaction mixture than blue light. In larger reaction volumes, where photon distribution becomes a limiting factor, near-infrared light penetrates approximately 23 times

Hydrogen-bonded macrocycle-mediated dimerization for orthogonal supramolecular polymerization

• Wentao Yu,
• Zhiyao Yang,
• Chengkan Yu,
• Xiaowei Li and
• Lihua Yuan

Beilstein J. Org. Chem. 2025, 21, 179–188, doi:10.3762/bjoc.21.10

• promising potential for designing stimuli-responsive and smart polymers in the future. ESIMS spectrum of an equimolar mixture of G1 and H1 in CHCl3/CH3CN (1:1, v/v), including calculated (blue) and experimental (red) isotopic distribution for [H12 + G12 − 2PF6−]2+. Calculated and found m/z = 2444.3373 and

Efficient synthesis of fluorinated triphenylenes with enhanced arene–perfluoroarene interactions in columnar mesophases

• Yang Chen,
• Jiao He,
• Hang Lin,
• Hai-Feng Wang,
• Ping Hu,
• Bi-Qin Wang,
• Ke-Qing Zhao and
• Bertrand Donnio

Beilstein J. Org. Chem. 2024, 20, 3263–3273, doi:10.3762/bjoc.20.270

• chain distribution had a net impact on both stability and nature of the mesophases. The versatility of this synthetic approach allows us to synthesize another set of mesomorphic compounds, based on a triphenylene core, 1,2,4-trifluoro-6,7,10,11-tetra(alkyloxy)-3-phenyltriphenylenes (PHn, and extended to

• -section of the columns) in order to maximize both the intermolecular interactions through the superimposition of fluoroarene segments and (alkylated) arene ones, partly similar to the crystal structure, and the homogeneous distribution of the chains around the columns, in agreement with the hexagonal

• compounds are also identical, independently of the chain length or the chain distribution, and the lattice expansion with temperature is not significative. However, the stacking appears to be less effective than for the Janus derivatives as the signal corresponding to core–core stacking is not as sharp and

Cyclodextrin-based rotaxanes for polymer materials: challenge on simultaneous realization of inexpensive production and defined structures

• Yosuke Akae

Beilstein J. Org. Chem. 2024, 20, 3026–3049, doi:10.3762/bjoc.20.252

• yield, and these were consistent with the general trend [14][68]. As reported here, a typical coverage-ratio control of the CD-based rotaxane framework has been implemented only at the level-containing distribution, and it has been challenging to realize a defined structure, such as the exact one or two

• acceptable to reduce the production costs, suggesting the industrial potential of this random modification protocol. As suggested by the recent study on the RCP made of crown ether-based [3]rotaxane crosslinker, the force distribution effect worked sufficiently to toughen RCPs, even when the translation

The charge transport properties of dicyanomethylene-functionalised violanthrone derivatives

• Sondos A. J. Almahmoud,
• Joseph Cameron,
• Dylan Wilkinson,
• Michele Cariello,
• Claire Wilson,
• Alan A. Wiles,
• Peter J. Skabara and
• Graeme Cooke

Beilstein J. Org. Chem. 2024, 20, 2921–2930, doi:10.3762/bjoc.20.244

• –π interactions with the potential to form nanoscale pure and mixed domains in the bulk heterojunction on the length scale of the exciton diffusion length (5–15 nm), leading to an efficient exciton dissociation and charge generation [12]. Figure 3 gives an insight into the spatial distribution and

Synthesis and antimycotic activity of new derivatives of imidazo[1,2-a]pyrimidines

• Dmitriy Yu. Vandyshev,
• Daria A. Mangusheva,
• Khidmet S. Shikhaliev,
• Kirill A. Scherbakov,
• Oleg N. Burov,
• Alexander D. Zagrebaev,
• Tatiana N. Khmelevskaya,
• Alexey S. Trenin and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2024, 20, 2806–2817, doi:10.3762/bjoc.20.236

• desired pharmacological properties. Therefore, the design and synthesis of new compounds of this class with improved ADMET (absorption, distribution, metabolism, excretion, toxicity) pharmacological properties is an urgent task. Molecular docking was carried out to identify potential binding positions of

Applications of microscopy and small angle scattering techniques for the characterisation of supramolecular gels

• Connor R. M. MacDonald and
• Emily R. Draper

Beilstein J. Org. Chem. 2024, 20, 2608–2634, doi:10.3762/bjoc.20.220

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

• Nian Li,
• Ruzal Sitdikov,
• Ajit Prabhakar Kale,
• Joost Steverlynck,
• Bo Li and
• Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

Catalysing (organo-)catalysis: Trends in the application of machine learning to enantioselective organocatalysis

• Stefan P. Schmid,
• Leon Schlosser,
• Frank Glorius and
• Kjell Jorner

Beilstein J. Org. Chem. 2024, 20, 2280–2304, doi:10.3762/bjoc.20.196

O,S,Se-containing Biginelli products based on cyclic β-ketosulfone and their postfunctionalization

• Kateryna V. Dil and
• Vitalii A. Palchykov

Beilstein J. Org. Chem. 2024, 20, 2143–2151, doi:10.3762/bjoc.20.184

• products and publications as analyzed by Reaxys database. The search was performed using depicted substructures “on all atoms” (May 2024). Distribution of compounds 2a–r, 3–7 (log P (y)–MW (x)) through LLAMA software. The chemical structure of a representative compound 2m is shown. The general Biginelli

Understanding X-ray-induced isomerisation in photoswitchable surfactant assemblies

• Beatrice E. Jones,
• Camille Blayo,
• Jake L. Greenfield,
• Matthew J. Fuchter,
• Nathan Cowieson and
• Rachel C. Evans

Beilstein J. Org. Chem. 2024, 20, 2005–2015, doi:10.3762/bjoc.20.176

• Gaussian distribution around the (polar) radius to incorporate polydispersity into the model. Data were fitted to the radii (both polar and equatorial for ellipsoidal form factors), shell thickness, scattering length density and length (for cylindrical form factors). The structure factor was fitted using

Allostreptopyrroles A–E, β-alkylpyrrole derivatives from an actinomycete Allostreptomyces sp. RD068384

• Marwa Elsbaey,
• Naoya Oku,
• Mohamed S. A. Abdel-Mottaleb and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2024, 20, 1981–1987, doi:10.3762/bjoc.20.174

• and 3, their conformational ensembles, datasets of a structure and population of each conformer [25], were determined using a Spartan 24 parallel package conformational search tool (Wavefunction Inc, USA), followed by geometry optimization of the most weighted conformers (Boltzmann distribution weight

• lower to 0.004). Eleven and seven weighted conformers for compounds 2 and 3 were obtained, respectively, each forming equilibrium mixtures. The quantum chemical method for the calculation of conformer distribution was ωB97X-V/6-311+G(2df,2p)[6-311G*] [30]. The CPCM solvation model for methanol was used

Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

• Pengcheng Lu,
• Luis Juarez,
• Paul A. Wiget,
• Weihe Zhang,
• Krishnan Raman and
• Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

• , implying a 7:1 distribution of isomers in solution. Concerning conditions A, compound 6 + Cs2CO3 was found to favor the deprotonated indazole with a free Cs+ ion by 8.6 kcal/mol (see Figure 3), however, when all ions are discrete (2 × Cs+ and CO32−) the reaction becomes endergonic by 6.9 kcal/mol