Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• compounds 38 are also interesting building blocks in pyrazole synthesis. Through the reaction of 1,5-diaryl-1,3,5-pentanetriones 38 with hydrazines, Knorr synthesis of pyrazoles and Fischer indole synthesis can be combined in a pseudo-three-component fashion to give 5-(indol-3-yl)pyrazoles 39 (Scheme 11

Harnessing the versatility of hydrazones through electrosynthetic oxidative transformations

• Aurélie Claraz

Beilstein J. Org. Chem. 2024, 20, 1988–2004, doi:10.3762/bjoc.20.175

• versatile reagents in organic synthesis. They have for instance been frequently employed for the construction of azacycles through various cyclization protocols or cycloaddition reactions [6][7][8][9][10]. Early work in this field includes the well-known Fischer indole synthesis [11]. Additionally, they

2-Heteroarylethylamines in medicinal chemistry: a review of 2-phenethylamine satellite chemical space

• Carlos Nieto,
• Alejandro Manchado,
• Ángel García-González,
• David Díez and
• Narciso M. Garrido

Beilstein J. Org. Chem. 2024, 20, 1880–1893, doi:10.3762/bjoc.20.163

• replacements leading to novel MAO-A bioactive entities [16][17]. The brominated analogue 8 showed moderate MAO-A activity compared to the parent 2-furyl compound 7, as a result of increased polarizability. The condensed benzofuran 9 revealed submicromolar MAO-A potency, a resemblance to the indole system of 5

• ., compounds derived from 2-(indole-3-yl)ethylamine, comprise a huge number of indole compounds such as serotonin (41) [42] (Scheme 7). These compounds play an important role for a variety of biological targets, from 5-HT (serotonin receptors) to RAS [43][44], and are used to treat disorders as diverse as

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• Ganesher [57] reported the one-pot cascade synthesis of indole-imidazo[1,2,a]pyridine hybrids 61 (Scheme 23). In this study, the convertible isocyanide 1-isocyano-2-(2,2-dimethoxyethyl)benzene (59, Kobayashi–Wessjohann isocyanide) was utilized as one of the precursors in the GBB reaction. The acetal

• -substituted products 60 underwent TFA-promoted deprotection which triggered the intramolecular cyclization to furnish the indole moiety in the desired products 61. A control experiment showed that the GBB product 60 was obtained as the sole product in the absence of acid catalyst. Another group developed the

• 65%. Lavilla et al. [59] explored the reactivity of indole carbaldehydes in the extended GBB multicomponent reaction. In this study, various fused-, linked- and bridged polyheterocycles were generated through different reaction pathways, depending on the type of indole carbaldehydes and the reaction

Harnessing unprotected deactivated amines and arylglyoxals in the Ugi reaction for the synthesis of fused complex nitrogen heterocycles

• Javier Gómez-Ayuso,
• Pablo Pertejo,
• Tomás Hermosilla,
• Israel Carreira-Barral,
• Roberto Quesada and
• María García-Valverde

Beilstein J. Org. Chem. 2024, 20, 1758–1766, doi:10.3762/bjoc.20.154

• acid, indole-2-carboxylic acid, pyrrole-2-carboxylic acid or N-phenylglycine has allowed the use of these compounds in the Ugi reaction without triggering competitive reactions. The additional functional group present in the resulting Ugi adduct can be leveraged in different post-condensation

• choice [23]. Synthesis of piperazinones On the basis of these results, we planned to synthesise piperazinone derivatives following a similar strategy. Thus, we chose different deactivated 2-amino-substituted carboxylic acid derivatives such as the indole-2-carboxylic acid, recently used in a similar

• tautomer, needed the addition of hydrochloric acid (1 equiv) in the case of the tert-butylamine derivatives. However, the nature of the cyclization product depended on the carboxylic acid employed in the Ugi reaction. Thus, the indole and pyrrole derivatives yielded the corresponding hemiaminal 9 as a

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• byproduct. This observation suggests a novel mechanism for indole C4 methylation by NosN [131][134]. S-Methyltransferases S-MTs are rare in RiPP biosynthesis and in natural product synthesis in general. There are few examples, and in most cases, the characterisation of the MT does not go beyond deletion

Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty

• Weimao Zhong and
• Vinayak Agarwal

Beilstein J. Org. Chem. 2024, 20, 1635–1651, doi:10.3762/bjoc.20.146

• chains possessed a nucleophilic primary amine. Curiously, the macrocyclizing amide bond was found to exist between a Trp side chain indole nitrogen and the C-terminal carboxylate. To the best of our knowledge, this was the first example of the involvement of a Trp indole in macrolactam formation in

• bacterial natural products, the only other example being the fungal psychrophilins [142][143][144]. It should be noted that the Trp indole nitrogen does participate in amide bond formation in other fungal natural products as well, but not in the context of macrocycle assembly [145]. Compound 27 inhibited

Supramolecular assemblies of amphiphilic donor–acceptor Stenhouse adducts as macroscopic soft scaffolds

• Ka-Lung Hung,
• Leong-Hung Cheung,
• Yikun Ren,
• Ming-Hin Chau,
• Yan-Yi Lam,
• Takashi Kajitani and
• Franco King-Chi Leung

Beilstein J. Org. Chem. 2024, 20, 1590–1603, doi:10.3762/bjoc.20.142

• nitrogen atmosphere, followed by reduction of the indole motif in compound 1n to indoline in 2n. The ester group in compound 2n was deprotected under basic conditions to give compound 3n (Scheme 2). DAn with different chain lengths of the alkyl linker were synthesized through an aza-Piancatalli

Mining raw plant transcriptomic data for new cyclopeptide alkaloids

• Draco Kriger,
• Michael A. Pasquale,
• Brigitte G. Ampolini and
• Jonathan R. Chekan

Beilstein J. Org. Chem. 2024, 20, 1548–1559, doi:10.3762/bjoc.20.138

• ]. These RiPP natural products encompass a wide range of structural scaffolds including cyclopeptide alkaloids that contain a phenolic ether-linkage and the lyciumin-type peptides that are composed of a crosslink between the Trp-indole-N and the carbon in another amino acid side chain or peptide backbone

• tryptophan at the position for cyclization, indicating they may correspond to the stephanotic acid-type burpitides like moroidin (Trp-indole-C to carbon crosslink, Figure 3) [4]. Amaranthaceae family The Amaranthaceae family is home to the known moroidin producer, Celosia argentea var. cristata (Cockscomb

• that both split and fused burpitide biosynthetic pathways may be responsible for producing the stephanotic acid sub-family of RiPPs that is characterized by the Trp-indole-C to carbon linkage [4]. Molecular networking of known and potential producers The transcriptome analysis indicated that many

Primary amine-catalyzed enantioselective 1,4-Michael addition reaction of pyrazolin-5-ones to α,β-unsaturated ketones

• Pooja Goyal,
• Akhil K. Dubey,
• Raghunath Chowdhury and
• Amey Wadawale

Beilstein J. Org. Chem. 2024, 20, 1518–1526, doi:10.3762/bjoc.20.136

• fascinating but at the same time challenging. Pyrazoles [4][5][6][7], benzofurans [34], and indoles [35][36] are popular scaffolds as they are prevalent in many bioactive molecules. Compounds bearing both pyrazole and indole moieties or pyrazole and benzofuran moieties (Figure 1) are highly attractive since

• such compounds might be endowed with potent biological activities. Under the disclosed optimized reaction conditions, the reaction between pyrazolin-5-one (2a) and indole-derived α,β-unsaturated ketone 1m was performed. The resulting hybrid molecule 3ma was isolated in 96% yield and 90% ee (Scheme 3

• applied to diverse α,β-unsaturated ketones and a pool of pyrazolin-5-ones. The formed Michael adducts were isolated in good to excellent yields and enantioselectivities. The method also led to enantioenriched hybrid molecules bearing pyrazole–indole moieties and pyrazole–benzofuranone moieties. It is

Synthetic applications of the Cannizzaro reaction

• Bhaskar Chatterjee,
• Dhananjoy Mondal and
• Smritilekha Bera

Beilstein J. Org. Chem. 2024, 20, 1376–1395, doi:10.3762/bjoc.20.120

• -β-lactone core 73 (Scheme 21). An expedient use of the Cannizzaro reaction was exemplified in the noteworthy enantioselective synthesis towards the indole alkaloids 16-epivellosimine, (+)-polyneuridine, and (+)-macusine A as reported by Cook and coworkers [89]. This was effectively worked out from ᴅ

• intramolecular Cannizzaro reaction. Spiro-β-lactone-γ-lactam part of oxazolomycins via aldol crossed-Cannizzaro reaction. Synthesis of indole alkaloids via aldol crossed-Cannizzaro reaction. Aldol and crossed-Cannizzaro reaction towards the synthesis of ertuliflozin. Synthesis of cyclooctadieneones using a

Transition-metal-catalyst-free electroreductive alkene hydroarylation with aryl halides under visible-light irradiation

• Kosuke Yamamoto,
• Kazuhisa Arita,
• Masami Kuriyama and
• Osamu Onomura

Beilstein J. Org. Chem. 2024, 20, 1327–1333, doi:10.3762/bjoc.20.116

• 3pa and 3qa, respectively. In addition to the successful transformations of heteroaryl iodides with indole or pyridine cores (3ra, 3sa), the electroreductive synthesis of methaqualone derivatives was also achieved (3ta). Pleasingly, a series of electron-deficient alkene and styrene derivatives were

Phenotellurazine redox catalysts: elements of design for radical cross-dehydrogenative coupling reactions

• Alina Paffen,
• Christopher Cremer and
• Frederic W. Patureau

Beilstein J. Org. Chem. 2024, 20, 1292–1297, doi:10.3762/bjoc.20.112

• enabling the activation of small yet highly relevant organic substrates. For example, Huber and co-authors recently designed a Te-based catalyst in an indole Michael addition reaction [1][2][3][4][5]. Pale and Mamane utilized another Te-based catalyst in an electrophilic bromine-mediated cyclization

• -rich optimized PTeZ16 (2-dimethylamino substituent) would outperform previously published PTeZ2 (2-methoxy) in that particular reaction. Unfortunately, this was not the case. At 1 mol % catalytic loading and 8 h reaction time, PTeZ2 considerably outperforms PTeZ16 (indole 4a towards product 5a, 81

• -substrate interaction. Phenotellurazine-catalyzed cross-dehydrogenative couplings. Screening of new Te(II)-catalyst candidates. ODCB: ortho-dichlorobenzene. Phenotellurazine-catalyzed cross-dehydrogenative indole dimerization. Supporting Information Supporting Information File 84: Experimental section and

Domino reactions of chromones with activated carbonyl compounds

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 1256–1269, doi:10.3762/bjoc.20.108

• alcohol and oxidation of the latter resulted in formation of the final product. The reason for the change of the regioselectivity of cyclization, as compared to the formation of products 36, remains unclear at present. The reaction of 3-halochromones with 3H-indole-2-thiones (thiooxindoles) 38a–c afforded

• attack of the sulfur to the bromide (intermediate AC) and subsequent ring-cleavage. In most reactions, DBU was employed as the base. In case of products derived from N-unsubstititued 3H-indole-2-thiones (R3 = H), employment of potassium carbonate proved to be advantageous. Similarly to the formation of

Manganese-catalyzed C–C and C–N bond formation with alcohols via borrowing hydrogen or hydrogen auto-transfer

• Mohd Farhan Ansari,
• Atul Kumar Maurya,
• Abhishek Kumar and
• Saravanakumar Elangovan

Beilstein J. Org. Chem. 2024, 20, 1111–1166, doi:10.3762/bjoc.20.98

• moderate-to-high yields with aliphatic and aromatic alcohols (Scheme 18). In addition, this protocol allowed for the synthesis of indole through an intramolecular reaction and a resveratrol-derived amine. However, this catalytic method did not tolerate some functional groups such as nitro, ester, and

• 20 h afforded the C3-alkylated indole products in up to 98% yield (Scheme 57). Similarly, the alkylation of indolines with various alcohols using 3 mol % of Mn9 in a TFE/toluene 2:1 mixture provided the corresponding N-alkylated products. The mechanistic investigation showed that the metal complex

• activated by the base dehydrogenates the alcohol to the aldehyde and indoline to indole by acceptorless dehydrogenation. Moreover, C3 alkylation proceeded via BH (Scheme 58). In early 2021, Maji’s group demonstrated an efficient approach for the C-alkylation of methyl N-heteroarenes with primary alcohols

Carbonylative synthesis and functionalization of indoles

• Alex De Salvo,
• Raffaella Mancuso and
• Xiao-Feng Wu

Beilstein J. Org. Chem. 2024, 20, 973–1000, doi:10.3762/bjoc.20.87

• recent achievements on the synthesis and functionalization of indole derivatives via carbonylative approaches. Keywords: carbonylation; functionalization; indole; metal catalyst; organometallic chemistry; Introduction Indole is a heterocyclic compound consisting of a benzene ring fused with a pyrrole

• ring. It was discovered in 1866 by Baeyer and Knop as the basic structure of the natural dye indigo, from which it is derived [1]. The indole ring is a common structural element found in both natural and synthetic products, including pharmaceuticals, agrochemicals, dyes, herbicides, and materials [2][3

• ][4]. The indole core is particularly noteworthy for its role in various biologically active compounds and drugs, such as antihypertensives, anti-inflammatories, antimycotics, antimigrants, anticancer drugs, and many others [5][6][7]. The first synthesis of indole has been introduced by Fischer in

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• substrate. Employing Lewis acid catalysis Deng and co-workers reported an alternative pathway to indole-derived BCHs. Polysubstituted BCHs were accessed by nucleophilic addition of the indole to the activated bicyclobutane followed by a Mannich cyclisation [81]. The synthesis of wide variety of tri- and

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

• Julien Borrel and
• Jerome Waser

Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64

• homopropargylic azide was formed using pyrrole 1e it could not be isolated due to its instability. No conversion was observed when the transformation was attempted directly on the indole scaffold 1f. Only a small amount of product was formed using styrene 1g bearing an extra α-phenyl substituent. A slightly

Production of non-natural 5-methylorsellinate-derived meroterpenoids in Aspergillus oryzae

• Jia Tang,
• Yixiang Zhang and
• Yudai Matsuda

Beilstein J. Org. Chem. 2024, 20, 638–644, doi:10.3762/bjoc.20.56

• pathway; their non-terpenoid portions can be polyketides, indole, or shikimate-derived compounds [1][2][3]. Their hybrid nature significantly contributes to their structural diversity and wide range of biological activities. Although meroterpenoids are found ubiquitously in nature, as both primary and

Chemical and biosynthetic potential of Penicillium shentong XL-F41

• Ran Zou,
• Xin Li,
• Xiaochen Chen,
• Yue-Wei Guo and
• Baofu Xu

Beilstein J. Org. Chem. 2024, 20, 597–606, doi:10.3762/bjoc.20.52

• investigations, accompanied by fermentation media optimization, of a newly isolated fungus, Penicillium shentong XL-F41, led to the isolation of twelve compounds. Among these are two novel indole terpene alkaloids, shentonins A and B (1 and 2), and a new fatty acid 3. Shentonin A (1) is distinguished by an

• activity against Candia albicans. Moreover, genome sequencing of Penicillium shentong XL-F41 uncovered abundant silent biosynthetic gene clusters, indicating the need for future efforts to activate these clusters and unlock the full chemical potential of the fungus. Keywords: genome analysis; indole

• ]. Recent studies have revealed that certain fungi are also prolific sources of indole alkaloids, which are among the largest classes of nitrogen-containing secondary metabolites. Characterized by at least one indole moiety and derived from tryptophan or tryptamine, indole alkaloids are known for their

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• a porphyrin carboxylate anion as the effector. This allowed the generation of photoinduced charge-separated states with extended lifetimes in a supramolecular triad [74]. Another switching unit controlled by an anion-binding stimulus is bis-indole, reported by Jang and co-workers (Figure 19a) [75

• ]. In the neutral state, the tweezers 34 adopt an anti-conformation because of steric hindrance between the N–H and the tert-butyl groups. Again, the N–H proton of the indole can bind to anions through hydrogen bonds and causes the system to adopt a cis-conformation, closing the tweezers. This closed

Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• -rich fluid emissions and unique sulfur oxidation–reduction reactions [1]. Due to the unique habitat, microorganisms surviving in the deep-sea cold seeps may serve as promising sources of secondary metabolites with functional and structural diversity [2]. In particular, two indole diketopiperazine

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• -inflammatory, and even anticancer agents. Traditionally, the synthesis of BIMs has been achieved upon the acidic condensation of an aldehyde with indole, utilizing a variety of protic or Lewis acids. However, due to the increased environmental awareness of our society, the focus has shifted towards the

• reaction between aldehydes with indoles, while focusing on the more environmentally friendly methods developed over the years. Keywords: aldehyde; BIMs; Friedel–Crafts reaction; green chemistry; indole; Review Medicinal properties In recent years, diindolylmethane (DIM, 1) and its derivatives known as

• highest fungicidal activity [11]. Brønsted or Lewis acid catalysis – conventional synthetic methods The indole moiety is part of many natural products, agrochemicals, and pharmaceuticals. In medicinal chemistry, indole and its derivatives are considered important compounds, since they exhibit valuable

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• . Intramolecular radical addition into the radical cation of the furan ring would then form cation 50 before nucleophilic capture by H2O leads to product 45. In 2020, the Wang group reported the functionalization of enamides employing radicals derived from NHPI esters in combination with indole nucleophiles [57

• irradiation at 390 nm or through RuII-mediated EnT under blue light irradiation (456 nm). Following excitation, SET from the enamide to the active ester forms intermediate 53, which undergoes fragmentation and radical recombination to afford intermediate 54. At this stage, the indole nucleophile substitutes

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• between carboranes and chalcogen-doped π-conjugated heterocycles, Yang and co-workers devised a two-step strategy for the synthesis of carborane-fused thiophene 43 (Scheme 11, bottom) [72]. Double lithiation of carboranyl indole 41 was followed by trapping with disulfur dichloride as chalcogen source to