Automating multistep flow synthesis: approach and challenges in integrating chemistry, machines and logic

• Chinmay A. Shukla and
• Amol A. Kulkarni

Beilstein J. Org. Chem. 2017, 13, 960–987, doi:10.3762/bjoc.13.97

N-Propargylamines: versatile building blocks in the construction of thiazole cores

• S. Arshadi,
• E. Vessally,
• L. Edjlali,
• R. Hosseinzadeh-Khanmiri and
• E. Ghorbani-Kalhor

Beilstein J. Org. Chem. 2017, 13, 625–638, doi:10.3762/bjoc.13.61

• cyclocondensation and the desired products were obtained in excellent yields [77]. Other systems such as Pd(OAc)2/THF [78], D301R (a tertiary amine-functionalized ion-exchange resin)/biphenyl [79], and diethylamine/NaOH/H2O [80] were also successfully employed in this transformation. Despite all these successes

• proposed by Balova et al. In their approach, a sequential cyclocondensation/5-exo-dig cyclization process between 2-amino-N-propargylanilines 4 and CS2 afforded heterocyclic systems of type 5. Isomerization of the latter compounds upon heating in the presence of KOH in ethanol gave the corresponding 2

• -benzylthiazolo[3,2-a]benzimidazoles 6 in good yields (Scheme 2a) [81]. In a closely related investigation, Shafiee and co-workers also found that the cyclocondensation of 2-amino-N-propargylbenzamides 7 with CS2 in a KOH/EtOH system gave the corresponding 2-methylenethiazolo[2,3-b]quinazolinones 8 in good to

Derivatives of the triaminoguanidinium ion, 5. Acylation of triaminoguanidines leading to symmetrical tris(acylamino)guanidines and mesoionic 1,2,4-triazolium-3-aminides

• Jan Szabo,
• Julian Greiner and
• Gerhard Maas

Beilstein J. Org. Chem. 2017, 13, 579–588, doi:10.3762/bjoc.13.57

• , triaminoguanidinium salts or the neutral triaminoguanidine have been reacted with carbonyl compounds. Reactions with aldehydes [3][4][5][6][7] or ketones [8][9][10] yielded the corresponding tris(iminyl)guanidines; cyclocondensation of pentane-2,4-dione at one hydrazinyl branch of TAG-Cl afforded a pyrazole which

Regiochemistry of cyclocondensation reactions in the synthesis of polyazaheterocycles

• Patrick T. Campos,
• Leticia V. Rodrigues,
• Andrei L. Belladona,
• Caroline R. Bender,
• Juliana S. Bitencurt,
• Fernanda A. Rosa,
• Davi F. Back,
• Helio G. Bonacorso,
• Nilo Zanatta,
• Clarissa P. Frizzo and
• Marcos A. P. Martins

Beilstein J. Org. Chem. 2017, 13, 257–266, doi:10.3762/bjoc.13.29

• -900,Maringa, PR, Brazil Departamento de Química, Universidade Federal de Santa Maria, 97105-900, Santa Maria, RS, Brazil 10.3762/bjoc.13.29 Abstract The syntheses of several polyazaheterocycles are demonstrated. The cyclocondensation reactions between β-enaminodiketones [CCl3C(O)C(=CNMe2)C(O)-CO2Et

• in the ring junction represents the cyclocondensation reaction [4]. Pyrido[1,2-a]pyrimidinones [5], thiazolo[3,2-a]pyrimidinones [6], and pyrimido[1,2-a]benzimidazole [7] are examples of polyazaheterocycles obtained through the reaction of 1,3-dielectrophiles and 1,3-dinucleophiles. Appropriately

• of the most common approaches used for the synthesis of pyrazinones [9][10] and quinoxalinone [11][12] cores is the cyclocondensation reaction between 1,2-dicarbonyl compounds and 1,2-diamines. In this manner, Zamcova et al. [13] reported the synthesis of imidazo[1,2]heteroarylglyoxylates, which

Synthesis of structurally diverse 3,4-dihydropyrimidin-2(1H)-ones via sequential Biginelli and Passerini reactions

• Andreas C. Boukis,
• Baptiste Monney and
• Michael A. R. Meier

Beilstein J. Org. Chem. 2017, 13, 54–62, doi:10.3762/bjoc.13.7

• modulation, α1a adrenoceptor-selective antagonists, cancer therapy, anti-HIV alkaloids) [12][13][14][15]. The mechanism of the Biginelli cyclocondensation was proposed and investigated by Kappe and is illustrated in Scheme 1a [16]. According to the generally accepted mechanism of the Biginelli reaction

Selective and eco-friendly procedures for the synthesis of benzimidazole derivatives. The role of the Er(OTf)₃ catalyst in the reaction selectivity

• Natividad Herrera Cano,
• Jorge G. Uranga,
• Mónica Nardi,
• Antonio Procopio,
• Daniel A. Wunderlin and
• Ana N. Santiago

Beilstein J. Org. Chem. 2016, 12, 2410–2419, doi:10.3762/bjoc.12.235

• , differences in reactivity were investigated by by means of theoretical calculations. Results and Discussion The benzimidazole core was obtained by air oxidative cyclocondensation of o-phenylenediamine with benzaldehyde under different conditions. In water and in the presence of Er(OTf)3, the diamine and

• between 1a and 1b observed in this work, two reaction pathways are proposed and shown in Scheme 2: (i) through bisimine rearrangement (path i) and (ii) through a monoamine cyclocondensation–aminal/immonium rearrangement (path ii). In path i, when the aldehyde approaches Er(OTf)3, the carbonyl carbon of

Microwave-assisted cyclizations promoted by polyphosphoric acid esters: a general method for 1-aryl-2-iminoazacycloalkanes

• Jimena E. Díaz,
• María C. Mollo and
• Liliana R. Orelli

Beilstein J. Org. Chem. 2016, 12, 2026–2031, doi:10.3762/bjoc.12.190

• in heterocyclic synthesis, specially in cyclocondensation reactions [39][40]. In particular, it has enabled the synthesis of the more challenging medium size (7–9 membered) heterocycles by overcoming limitations such as low reactivity and yields, harsh reaction conditions and side reactions typical

Three-component synthesis of highly functionalized aziridines containing a peptide side chain and their one-step transformation into β-functionalized α-ketoamides

• Lena Huck,
• Juan F. González,
• Elena de la Cuesta and
• J. Carlos Menéndez

Beilstein J. Org. Chem. 2016, 12, 1772–1777, doi:10.3762/bjoc.12.166

• corresponding compounds 11, which were then transformed into pyrazines 12 and quinoxalines 13 via straightforward cyclocondensation reactions with ethylenediamine and o-phenylenediamine, respectively (Scheme 6 and Table 3). The transformation of 2 into 11 can be explained by the mechanism summarized in Scheme 7

Synthesis of highly functionalized 2,2'-bipyridines by cyclocondensation of β-ketoenamides – scope and limitations

• Paul Hommes and
• Hans-Ulrich Reissig

Beilstein J. Org. Chem. 2016, 12, 1170–1177, doi:10.3762/bjoc.12.112

• corresponding β-ketoenamines 2a–e were converted into different β-ketoenamides 3a–g by N-acylation with 2-pyridinecarboxylic acid derivatives. These β-ketoenamides were treated with a mixture of TMSOTf and Hünig’s base to promote the cyclocondensation to 4-hydroxypyridine derivatives. Their immediate O

• couplings. Thus, a library of specifically substituted bipyridine derivatives was generated, showing the versatility of the simple 1,3-diketone-based approach to this important class of ligands. Keywords: 2,2-bipyridines; cross couplings; cyclocondensation; β-ketoenamides; nonaflates; Introduction In 2009

• we reported on a new pyridine synthesis starting from symmetrically substituted 1,3-diketones 1a and 1b, respectively, that were converted into the corresponding β-ketoenamines and subsequently by N-acylation into β-ketoenamides such as 3a or 3b [1]. Their cyclocondensation followed by O-alkylation

Antibacterial structure–activity relationship studies of several tricyclic sulfur-containing flavonoids

• Lucian G. Bahrin,
• Henning Hopf,
• Peter G. Jones,
• Laura G. Sarbu,
• Cornelia Babii,
• Alina C. Mihai,
• Marius Stefan and
• Lucian M. Birsa

Beilstein J. Org. Chem. 2016, 12, 1065–1071, doi:10.3762/bjoc.12.100

• –activity relationship study concerning the antibacterial properties of several halogen-substituted tricyclic sulfur-containing flavonoids has been performed. The compounds have been synthesized by cyclocondensation of the corresponding 3-dithiocarbamic flavanones under acidic conditions. The influence of

• and 4f crystals suitable for single crystal X-ray analysis were obtained and the results are discussed in the X-ray analysis section. The acid-catalyzed cyclocondensation of flavanones 4a–m afforded the tricyclic flavonoids 5a–m in good yields [23] (Scheme 1). The formation of the 1,3-dithiolium ring

[2.2]Paracyclophane derivatives containing tetrathiafulvalene moieties

• Laura G. Sarbu,
• Lucian G. Bahrin,
• Peter G. Jones,
• Lucian M. Birsa and
• Henning Hopf

Beilstein J. Org. Chem. 2015, 11, 1917–1921, doi:10.3762/bjoc.11.207

• salts, consists of an acid-catalyzed cyclocondensation of phenacyl carbodithioates 4. Using a concentrated sulfuric acid–glacial acetic acid mixture (1:3, v/v) [20], the cyclization of carbodithioates 4a–c takes place under mild reaction conditions. After 10 min at 80 °C the homogeneous reaction mixture

The synthesis of active pharmaceutical ingredients (APIs) using continuous flow chemistry

• Marcus Baumann and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2015, 11, 1194–1219, doi:10.3762/bjoc.11.134

• small collection of 22 imidazo[1,2-a]pyridines 136 was prepared within four working days. The synthetic route consisted of an aldol condensation between various acetophenones 137 and ethyl glyoxylate (138). This was followed by an HBF4-catalysed cyclocondensation of the resulting Michael acceptor 139

The reactions of 2-ethoxymethylidene-3-oxo esters and their analogues with 5-aminotetrazole as a way to novel azaheterocycles

• Marina V. Goryaeva,
• Yanina V. Burgart,
• Marina A. Ezhikova,
• Mikhail I. Kodess and
• Viktor I. Saloutin

Beilstein J. Org. Chem. 2015, 11, 385–391, doi:10.3762/bjoc.11.44

• ], antiviral [14], antimicrobial and antioxidant activity [15] have been found among them. The known tetrazolo[1,5-a]pyrimidines were synthesized by cyclocondensation of 5-AT with 1,3-dicarbonyl compounds or their derivatives [16]. Moreover, a convenient method for obtaining this heterocyclic skeleton is the

The unexpected influence of aryl substituents in N-aryl-3-oxobutanamides on the behavior of their multicomponent reactions with 5-amino-3-methylisoxazole and salicylaldehyde

• Volodymyr V. Tkachenko,
• Elena A. Muravyova,
• Sergey M. Desenko,
• Oleg V. Shishkin,
• Svetlana V. Shishkina,
• Dmytro O. Sysoiev,
• Thomas J. J. Müller and
• Valentin A. Chebanov

Beilstein J. Org. Chem. 2014, 10, 3019–3030, doi:10.3762/bjoc.10.320

• alia, ultrasonic activation was applied to promote this multicomponent reaction. It was established that the three-component cyclocondensation of the starting compounds under ultrasonication at room temperature for 4 h led to the selective formation of the substituted chroman-3-carboxamide 4a in 58

• %) was identified as the catalyst of choice. The next step of our study was to expand the range of N-aryl-3-oxobutanamides. First, it is worth mentioning that the three-component cyclocondensation of 5-amino-3-methylisoxazole (1), salicylaldehyde (2) and N-aryl-3-oxobutanamides 3a–h under ultrasonication

Facile synthesis of 1H-imidazo[1,2-b]pyrazoles via a sequential one-pot synthetic approach

• András Demjén,
• Márió Gyuris,
• János Wölfling,
• László G. Puskás and
• Iván Kanizsai

Beilstein J. Org. Chem. 2014, 10, 2338–2344, doi:10.3762/bjoc.10.243

• envisage a sequential one-pot access to 1H-imidazo[1,2-b]pyrazole species through the in situ microwave-assisted formation of 1a followed by a GBB-3CR. A comparative study for the optimum synthesis of 6 revealed that the cyclocondensation of ethoxymethylene malononitrile (4a) with hydrazine (5) under

Influence of cyclodextrin on the UCST- and LCST-behavior of poly(2-methacrylamido-caprolactam)-co-(N,N-dimethylacrylamide)

• Alexander Burkhart and
• Helmut Ritter

Beilstein J. Org. Chem. 2014, 10, 1951–1958, doi:10.3762/bjoc.10.203

• -amino-ε-caprolactam (2) was obtained according to literature via cyclocondensation of L-lysine (1) [15]. Through amidation of the primary amine (2) with methacryloyl chloride (3) the polymerizable 2-methacrylamido-caprolactam (4) was obtained (Scheme 1) [14]. Free radical copolymerization of 4 in

Syntheses of ¹⁵N-labeled pre-queuosine nucleobase derivatives

• Jasmin Levic and
• Ronald Micura

Beilstein J. Org. Chem. 2014, 10, 1914–1918, doi:10.3762/bjoc.10.199

• chromatography on SiO2 and isolated in good yields. The pyrrolo[2,3-d]pyrimidine ring system of preQ1 base was built in good yields via the cyclocondensation reaction between [15N1,15N3,H215N(C2)]-2,6-diaminopyrimidin-4-one (6) and the 2-bromo-3-phthalimidopropan-1-al (7). Finally, deprotection was performed

• compound 13, followed by cyclocondensation with 2-bromo-3-phthalimidopropan-1-al (7) to give the protected [15N9]-preQ1 base 14 for subsequent deprotection yielding the desired [15N9]-preQ1 base (2) (Scheme 3). Also for the third target, [H215N(C7')]-preQ1 base (3), our strategy turn out to be highly

• reaction with 5,5-dibromobarbituric acid [17] to obtain [15N]-2-bromo-3-phthalimidopropan-1-al (19), followed by cyclocondensation with commercially available 2,6-diaminopyrimidin-4-one (20) to give the protected [15N(C7')]-preQ1 base 21 for subsequent deprotection yielding the desired [15N(C7')]-preQ1

Stereoselective synthesis of carbocyclic analogues of the nucleoside Q precursor (PreQ₀)

• Sabin Llona-Minguez and
• Simon P. Mackay

Beilstein J. Org. Chem. 2014, 10, 1333–1338, doi:10.3762/bjoc.10.135

• formylation of chloroacetonitrile with methyl formate. The resulting volatile and unstable chloroaldehyde 6 was used without further purification. Cyclocondensation of 6 with 2,4-diamino-4-hydroxypyrimidine afforded 1 regiospecifically with no detectable formation of the undesired 6-substituted-furo[2,3-d

Simple two-step synthesis of 2,4-disubstituted pyrroles and 3,5-disubstituted pyrrole-2-carbonitriles from enones

• Murat Kucukdisli,
• Dorota Ferenc,
• Marcel Heinz,
• Christine Wiebe and
• Till Opatz

Beilstein J. Org. Chem. 2014, 10, 466–470, doi:10.3762/bjoc.10.44

• .10.44 Abstract The cyclocondensation of enones with aminoacetonitrile furnishes 3,4-dihydro-2H-pyrrole-2-carbonitriles which can be readily converted to 2,4-disubstituted pyrroles by microwave-induced dehydrocyanation. Alternatively, oxidation of the intermediates produces 3,5-disubstituted pyrrole-2

• closure to furnish 3,4-dihydro-2H-pyrrole-2-carbonitriles 6 after reprotonation [36]. If the products are devoid of an additional substituent in 2-position, the cyclocondensation can be simply effected by refluxing a mixture of the enone 1 and aminoacetonitrile hydrochloride (2) in pyridine. The base

• pyrroles and 3,5-disubstituted pyrrole-2-carbonitriles by means of a cyclocondensation with aminoacetonitrile and a microwave-assisted dehydrocyanation or a dehydrogenation with DDQ. These methods provide a simple an efficient entry into these useful compound classes. Experimental Typical procedure for the

The Flögel-three-component reaction with dicarboxylic acids – an approach to bis(β-alkoxy-β-ketoenamides) for the synthesis of complex pyridine and pyrimidine derivatives

• Mrinal K. Bera,
• Moisés Domínguez,
• Paul Hommes and
• Hans-Ulrich Reissig

Beilstein J. Org. Chem. 2014, 10, 394–404, doi:10.3762/bjoc.10.37

• cyclocondensation of bis(β-ketoenamides) 13–15 to pyrimidines (Scheme 4) using ammonium acetate as ammonia source. Initially we subjected enamide 13 to conditions that had been optimized for mono-β-ketoenamides [48][49], in this case resulting in incomplete conversion: after heating 13 with 8 equiv of ammonium

Synthesis of five- and six-membered cyclic organic peroxides: Key transformations into peroxide ring-retaining products

• Alexander O. Terent'ev,
• Dmitry A. Borisov,
• Vera A. Vil’ and
• Valery M. Dembitsky

Beilstein J. Org. Chem. 2014, 10, 34–114, doi:10.3762/bjoc.10.6

New syntheses of 5,6- and 7,8-diaminoquinolines

• Maroš Bella and
• Viktor Milata

Beilstein J. Org. Chem. 2013, 9, 2669–2674, doi:10.3762/bjoc.9.302

• in a poor yield by application of the Skraup synthesis to 5-acetylamidoquinoxaline [16]. Notably, 7,8-diaminoquinoline dihydrochloride condensed with glyoxal bisulfite only with the amino group in position 7 and the pyrazine ring was not closed [17]. In the present case, the cyclocondensation of

An overview of the synthetic routes to the best selling drugs containing 6-membered heterocycles

• Marcus Baumann and
• Ian R. Baxendale

Beilstein J. Org. Chem. 2013, 9, 2265–2319, doi:10.3762/bjoc.9.265

• formed and subsequently undergoes cyclocondensation with the Michael acceptor 1.36 as the rate determining step of this sequence [30]. Other important species containing a pyridine moiety are rosiglitazone (1.40, Avandia) and pioglitazone (1.41, Actos), which are members of the so called

• chromium(VI) oxide yielded the aldehyde 1.67 required for the previously described Knoevenagel condensation. The five membered heterocycle 2,4-thiazolidinedione (1.68) is readily available commercially, but can be easily prepared at scale via a simple cyclocondensation between thiourea and chloroacetic

One-step synthesis of pyridines and dihydropyridines in a continuous flow microwave reactor

• Mark C. Bagley,
• Vincenzo Fusillo,
• Robert L. Jenkins,
• M. Caterina Lubinu and
• Christopher Mason

Beilstein J. Org. Chem. 2013, 9, 1957–1968, doi:10.3762/bjoc.9.232

• . [47] have demonstrated that ethynyl ketones can be generated in flow by the palladium-catalysed acylation of terminal alkynes and further transformed in a continuous process to pyrazoles by cyclocondensation with hydrazines using a commercially available conductive heating modular flow reactor. Given

• that this cyclocondensation proceeds in a similar fashion and high efficiency under microwave irradiation [48], and that we have previously demonstrated that pyridines and pyrimidines can both be formed rapidly and efficiently from ethynyl ketones using microwave dielectric heating, the transfer of

• , a transformation which currently cannot be realized, it does provide a useful substrate for 3- or 4-component Hantzsch DHP synthesis that undergoes cyclocondensation with high efficiency. To conclude, continuous flow microwave-assisted reactions represent a reliable method to scale up the production

Synthesis of enones, pyrazolines and pyrrolines with gem-difluoroalkyl side chains

• Assaad Nasr El Dine,
• Ali Khalaf,
• Danielle Grée,
• Olivier Tasseau,
• Fares Fares,
• Nada Jaber,
• Philippe Lesot,
• Ali Hachem and
• René Grée

Beilstein J. Org. Chem. 2013, 9, 1943–1948, doi:10.3762/bjoc.9.230

• representative 5-membered heterocyclic systems with CF2R side chains by using cyclocondensation reactions. Furthermore, selected molecules in these series were functionalized by using appropriate palladium-catalyzed coupling reactions en route to chemical libraries. Results and Discussion The first example of a

• coupling–isomerisation process followed by a cyclocondensation [30]. Pyrroline is another noteworthy example of a heterocyclic scaffold useful in bioorganic and medicinal chemistry [31][32]. It is also well-recognized for agrochemicals, especially in combination with CF3 substituents. Recently, the group