Convenient access to pyrrolidin-3-ylphosphonic acids and tetrahydro-2H-pyran-3-ylphosphonates with multiple contiguous stereocenters from nonracemic adducts of a Ni(II)-catalyzed Michael reaction

• Alexander N. Reznikov,
• Dmitry S. Nikerov,
• Anastasiya E. Sibiryakova,
• Victor B. Rybakov,
• Evgeniy V. Golovin and
• Yuri N. Klimochkin

Beilstein J. Org. Chem. 2020, 16, 2073–2079, doi:10.3762/bjoc.16.174

• (Scheme 2). An X-ray diffraction study [50] of the formyl derivative 10a showed its (2R,3R,4S)-configuration (Figure 3). The absolute configuration of the other phosphonates 10b–d and 11b–d is assumed by analogy. Hydrogenation of phosphonates 6d,f with o-anisyl and bulky adamantan-1-yl substituents at the

Controlling the stereochemistry in 2-oxo-aldehyde-derived Ugi adducts through the cinchona alkaloid-promoted electrophilic fluorination

• Yuqing Wang,
• Gaigai Wang,
• Anatoly A. Peshkov,
• Ruwei Yao,
• Muhammad Hasan,
• Manzoor Zaman,
• Chao Liu,
• Stepan Kashtanov,
• Olga P. Pereshivko and
• Vsevolod A. Peshkov

Beilstein J. Org. Chem. 2020, 16, 1963–1973, doi:10.3762/bjoc.16.163

• favored by the parent alkaloids featuring free alcohol moiety (e.g., Q-Bn favored the formation of the enantiomer of 12 with the absolute configuration opposite to the one favored by Q). Substrates 8h and 8i were tested with only four cinchona alkaloid derivatives, but the observed stereochemical trends

• appeared to be consistent with those established for the rest of arylamine-derived Ugi adducts 8d–g. Finally, we attempted to determine the absolute configuration of a stereocenter for the major enantiomer of the representative fluorinated product. Using a sample of product 12e with the ee value of 74% we

Synthesis of monophosphorylated lipid A precursors using 2-naphthylmethyl ether as a protecting group

• Jundi Xue,
• Ziyi Han,
• Gen Li,
• Khalisha A. Emmanuel,
• Cynthia L. McManus,
• Qiang Sui,
• Dongmian Ge,
• Qi Gao and
• Li Cai

Beilstein J. Org. Chem. 2020, 16, 1955–1962, doi:10.3762/bjoc.16.162

• )-3-hydroxytetradecanoate (5) in 98% yield. The same hydrogenation reaction was carried out using the (S)-Ru(OAc)2(BINAP) catalyst. Then both the R and S products were compared using chiral HPLC to confirm the absolute configuration and enantiomeric purity (Figure S1, Supporting Information File 1

Three new O-isocrotonyl-3-hydroxybutyric acid congeners produced by a sea anemone-derived marine bacterium of the genus Vibrio

• Dandan Li,
• Enjuro Harunari,
• Tao Zhou,
• Naoya Oku and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2020, 16, 1869–1874, doi:10.3762/bjoc.16.154

• describe the isolation, structure elucidation, including the absolute configuration, and bioactivity of 1–4. Results and Discussion The producing strain was cultured in a sea water-based medium and then extracted with n-BuOH. The extract was successively fractionated by silica gel chromatography using a

• , respectively (Figure 1). A database search identified the planar structure of 4 in a patent that described 5 (Figure 1) from marine obligate Vibrio sp. C-984 [9]. To determine the absolute configuration of C3 in 1–4, an anisotropy-based chiral analysis using a chiral derivatization reagent, phenylglycine

Nonenzymatic synthesis of anomerically pure, mannosyl-based molecular probes for scramblase identification studies

• Giovanni Picca,
• Markus Probst,
• Simon M. Langenegger,
• Oleg Khorev,
• Peter Bütikofer,
• Anant K. Menon and
• Robert Häner

Beilstein J. Org. Chem. 2020, 16, 1732–1739, doi:10.3762/bjoc.16.145

• configuration at the anomeric position and to prove the working principle of our synthetic strategy, we used 2D NMR experiments. Coupled HSQC measurements revealed the 1JCH coupling constants of our compounds and thereby the absolute configuration at the anomeric center of the carbohydrate [40][41][42]. For MPC

NHC-catalyzed enantioselective synthesis of β-trifluoromethyl-β-hydroxyamides

• Alyn T. Davies,
• Mark D. Greenhalgh,
• Alexandra M. Z. Slawin and
• Andrew D. Smith

Beilstein J. Org. Chem. 2020, 16, 1572–1578, doi:10.3762/bjoc.16.129

• tolerated, giving a consistent diastereoselectivity of ≈75:25 dr (Scheme 2). Following chromatographic purification, the desired products 12–14, respectively, were isolated in 59–71% yield as single diastereoisomers with excellent enantioselectivity (95:5 to >99:1 er). The relative and absolute

• configuration of (2S,3S)-β-trifluoromethyl-β-hydroxyamide 12 was confirmed by single crystal X-ray crystallographic analysis, with all other products in this series assigned by analogy to 12 [57]. The introduction of an electron-donating p-tolyl substituent was also tolerated in the system, providing the

A cyclopeptide and three oligomycin-class polyketides produced by an underexplored actinomycete of the genus Pseudosporangium

• Shun Saito,
• Kota Atsumi,
• Tao Zhou,
• Keisuke Fukaya,
• Daisuke Urabe,
• Naoya Oku,
• Md. Rokon Ul Karim,
• Hisayuki Komaki and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2020, 16, 1100–1110, doi:10.3762/bjoc.16.97

• absolute configuration of the Trp residue was determined using a chiral derivatizing reagent, phenylglycine methyl ester (PGME) [21]. Compound 1 was reacted with both enantiomers of PGME to give (R)- and (S)-PGME amides 5a and 5b, and the difference of the 1H NMR chemical shifts ΔδS−R was calculated around

• effects at 236 nm and 217 nm, respectively, which was consistent with a Cotton effect pattern predicted for the Sa-atropisomer of 1b. Moreover, the overall spectral feature of the experimental and calculated ECDs were quite similar with each other (Figure 5). Based on these results, the absolute

• configuration of 1 was concluded to be 2S,2'S,2''S,6Sa. Pseudosporamicin A (2) was obtained as white amorphous solid. An HRESITOFMS analysis gave a deprotonated molecular ion [M − H]− at m/z 831.5255, which corresponded to the molecular formula having 10 degrees of unsaturation, C47H76O12. The 1H and 13C NMR

Efficient synthesis of dipeptide analogues of α-fluorinated β-aminophosphonates

• Marcin Kaźmierczak and
• Henryk Koroniak

Beilstein J. Org. Chem. 2020, 16, 756–762, doi:10.3762/bjoc.16.69

• Herein, we present an efficient synthesis of dipeptide analogues of α-fluorinated β-aminophosphonates. Each step of the synthesis was optimized to provide excellent yields. Moreover, the absolute configuration of the obtained compounds was determined by X-ray analysis, which proved the stereochemistry

• regioselectivity of the fluorination reaction. The absolute configuration of the obtained compounds was determined and confirmed by X-ray analysis. Furthermore, we present the use of α-fluorinated β-aminophosphonates as building blocks in the synthesis of their dipeptide analogues. In addition, we show the results

• ]. Crystallization of derivative 14c from D2O brought the expected results. The analysis confirmed the structure of the resulting compound 14c. The absolute configuration of 14c is consistent with the stereochemistry we proposed based on NMR studies. The crystals of 14c contained the (1R,2S)-diastereoisomer (Figure

Combining enyne metathesis with long-established organic transformations: a powerful strategy for the sustainable synthesis of bioactive molecules

• Valerian Dragutan,
• Ileana Dragutan,
• Albert Demonceau and
• Lionel Delaude

Beilstein J. Org. Chem. 2020, 16, 738–755, doi:10.3762/bjoc.16.68

•  11). This innovative methodology allowed the installation of the vicinal exo‐methylene branches characteristic for the cytotoxic marine natural product amphidinolide V as well as the determination of its absolute configuration. It further enabled the synthesis of a set of diastereomers and analogs of

Recent advances in Cu-catalyzed C(sp³)–Si and C(sp³)–B bond formation

• Balaram S. Takale,
• Ruchita R. Thakore,
• Elham Etemadi-Davan and
• Bruce H. Lipshutz

Beilstein J. Org. Chem. 2020, 16, 691–737, doi:10.3762/bjoc.16.67

• enantioselectivities. Aliphatic chains gave a high degree of enantioselectivity (up to 98%), while more moderate ees were noted when the substrates were branched at the γ-site (Scheme 70) [133]. The absolute configuration at each stereogenic center was determined by subsequent conversion of the borylated acylimidazole

Asymmetric synthesis of CF₂-functionalized aziridines by combined strong Brønsted acid catalysis

• Xing-Fa Tan,
• Fa-Guang Zhang and
• Jun-An Ma

Beilstein J. Org. Chem. 2020, 16, 638–644, doi:10.3762/bjoc.16.60

• dr values, including alkyl or halogen-substituted phenyl and 2-naphthyl ketones (Scheme 2). Unfortunately, phenylglyoxal monohydrates bearing strong electron-withdrawing groups were not compatible with the current conditions. X-ray analysis of aziridine 4a confirmed the absolute configuration of the

Copper-catalyzed enantioselective conjugate reduction of α,β-unsaturated esters with chiral phenol–carbene ligands

• Shohei Mimura,
• Sho Mizushima,
• Yohei Shimizu and
• Masaya Sawamura

Beilstein J. Org. Chem. 2020, 16, 537–543, doi:10.3762/bjoc.16.50

• % yield, with slightly lower enantioselectivity (Table 2, entry 2, 82% ee (S) vs 90% ee (R) in entry 1). The inversion of the absolute configuration of the product depended on the E/Z geometry of the substrates, and this was analogous to the reported results obtained with the chiral bisphosphine ligand

• UV detector, retention time = 9.1 min for the (R)-isomer and 13.3 min for the (S)-isomer). The absolute configuration of 2a was assigned by the comparison of the optical rotation with the same compound prepared by a reported method [4]. Proposed catalytic cycle. Optimization of the copper-catalyzed

Absolute configurations of talaromycones A and B, α-diversonolic ester, and aspergillusone B from endophytic Talaromyces sp. ECN211

• Ken-ichi Nakashima,
• Junko Tomida,
• Takao Hirai,
• Yoshiaki Kawamura and
• Makoto Inoue

Beilstein J. Org. Chem. 2020, 16, 290–296, doi:10.3762/bjoc.16.28

• first time in over 50 years. Keywords: absolute configuration; endophytic fungus; glauconic acid; Talaromyces; tetrahydroxanthone; xanthenedione; Introduction The xanthones, which are a class of phenolic compounds produced by many different organisms, including plants, lichens, fungi, and bacteria

• were presented. Furthermore, Nicolaou and Li introduced a means by which the absolute configuration can be determined from the total synthesis of α-diversonolic ester (3) [5]. However, to the best of our knowledge, data that enabled the determination of the absolute configuration has not been published

• . Nevertheless, the absolute configuration of aspergillusone B (4), which is a compound similar to α-diversonolic ester (3), had been determined by comparing the sign of its optical rotation with that of α-diversonolic ester (3) [6]. Therefore, the reported absolute configurations of 3 and aspergillusone B (4

Pigmentosins from Gibellula sp. as antibiofilm agents and a new glycosylated asperfuran from Cordyceps javanica

• Soleiman E. Helaly,
• Wilawan Kuephadungphan,
• Patima Phainuphong,
• Mahmoud A. A. Ibrahim,
• Kanoksri Tasanathai,
• Suchada Mongkolsamrit,
• Janet Jennifer Luangsa-ard,
• Souwalak Phongpaichit,
• Vatcharin Rukachaisirikul and
• Marc Stadler

Beilstein J. Org. Chem. 2019, 15, 2968–2981, doi:10.3762/bjoc.15.293

• -forming S. aureus. The structure elucidation and determination of the absolute configuration were accomplished using a combination of spectroscopy, including 1D and 2D NMR, HRMS, Mosher ester analysis, and comparison of calculated/experimental ECD spectra. A chemotaxonomic investigation of the secondary

• . Thus, the atropisomerism at the 6-6′ axis of pigmentosin A (1) was determined to be aR, while the absolute configuration of the stereogenic centers C-3/C-3′ remains unsolved. Compound 2 was obtained as pale green powder. The molecular formula of 2 was determined as C32H30O11 based on HRMS data. The 13C

• absolute configuration at C-12′of pigmentosin B (2), Mosher esters of 2 were prepared. The analysis of the ΔδSR values of the α-methoxy-α-trifluoromethylphenylacetic acid (MTPA) esters were revealed to be negative (−0.07 for H-12′and −0.08/−0.05 for H2-11′), while positive ΔδSR values were observed for H3

Influence of the cis/trans configuration on the supramolecular aggregation of aryltriazoles

• Sara Tejera,
• Giada Caniglia,
• Rosa L. Dorta,
• Andrea Favero,
• Javier González-Platas and
• Jesús T. Vázquez

Beilstein J. Org. Chem. 2019, 15, 2881–2888, doi:10.3762/bjoc.15.282

• characterization process of glucosyl mono- and ditriazole derivatives, which we carried out in order to analyze the use of aryltriazoles for the determination of absolute configuration [15], we serendipitously discovered that these glucosyl ditriazoles led to gels. Therefore, we carried out the corresponding

Emission and biosynthesis of volatile terpenoids from the plasmodial slime mold Physarum polycephalum

• Xinlu Chen,
• Tobias G. Köllner,
• Wangdan Xiong,
• Guo Wei and
• Feng Chen

Beilstein J. Org. Chem. 2019, 15, 2872–2880, doi:10.3762/bjoc.15.281

• )-β-caryophyllene. However, since we have not performed chiral analysis, the absolute configuration of (E)-β-caryophyllene emitted from P. polycephalum plasmodia is still unknown. C) Mass spectra of unidentified terpenoids. P. polycephalum contains four terpene synthase genes. A) Multiple sequence

Nanangenines: drimane sesquiterpenoids as the dominant metabolite cohort of a novel Australian fungus, Aspergillus nanangensis

• Heather J. Lacey,
• Cameron L. M. Gilchrist,
• Andrew Crombie,
• John A. Kalaitzis,
• Daniel Vuong,
• Peter J. Rutledge,
• Peter Turner,
• John I. Pitt,
• Ernest Lacey,
• Yit-Heng Chooi and
• Andrew M. Piggott

Beilstein J. Org. Chem. 2019, 15, 2631–2643, doi:10.3762/bjoc.15.256

• strobilactone B, previously reported from A. ustus [29], with the only difference being hydroxylation at C-1 in 1, instead of at C-2. Therefore, the structure of 1 was assigned as shown in Figure 1. The absolute configuration of 1 was confirmed to be 1R,5S,6R,9R,13R by single crystal X-ray diffraction analysis

• reported in 2014 as an unnamed metabolite from Aspergillus sp. IBWF002-96 [5], and we have assigned the trivial name nanangenine B for consistency. The absolute configuration of 2 was assigned based on single crystal X-ray diffraction analysis of a 9-O-(4-bromobenzoyl) derivative (2b; Table S2 and Figure

• an unnamed metabolite (code number SF002-96-1) from Aspergillus sp. IBWF002-96 [4], and we have assigned the trivial name isonanangenine B for consistency. The absolute configuration of 3 was assigned based on single crystal X-ray diffraction analysis of a 1-O-(4-bromobenzoyl) derivative (3b; Table

α-Photooxygenation of chiral aldehydes with singlet oxygen

• Dominika J. Walaszek,
• Magdalena Jawiczuk,
• Jakub Durka,
• Olga Drapała and
• Dorota Gryko

Beilstein J. Org. Chem. 2019, 15, 2076–2084, doi:10.3762/bjoc.15.205

• of diarylprolinol silyl ethers is highly diastereoselective and that the configuration of a newly created stereocenter at the α-position depends predominantly on the catalyst structure. The absolute configuration of chiral 1,2-diols has been unambiguously established based on electronic circular

• preexisting stereochemical elements influence the stereoselectivity of this reaction. To this end we investigated α-photooxygenation of chiral aldehydes with a stereocenter at the β-position (Scheme 1). In such a case, the outcome should depend on the relationships between the absolute configuration of the

• stereoselectivity was enforced by bulkier and electron-withdrawing groups as diarylprolinol silyl ether 18 (Table 1, entries 4 and 5). The absolute configuration of diastereoisomers formed was assigned using chiroptical spectroscopic methods (see section ‘Determination of the absolute configuration of the product

Bipolenins K–N: New sesquiterpenoids from the fungal plant pathogen Bipolaris sorokiniana

• Chin-Soon Phan,
• Hang Li,
• Simon Kessler,
• Peter S. Solomon,
• Andrew M. Piggott and
• Yit-Heng Chooi

Beilstein J. Org. Chem. 2019, 15, 2020–2028, doi:10.3762/bjoc.15.198

• -13 were α-oriented. The absolute configuration of 1 was determined to be 1R,3R,6S,7R,13S by comparison of the experimental electronic circular dichroism (ECD) spectrum with time-dependent density functional theory (TDDFT)-calculated ECD spectra of the two possible enantiomers of 1 (Figure 4

Analysis of sesquiterpene hydrocarbons in grape berry exocarp (Vitis vinifera L.) using in vivo-labeling and comprehensive two-dimensional gas chromatography–mass spectrometry (GC×GC–MS)

• Philipp P. Könen and
• Matthias Wüst

Beilstein J. Org. Chem. 2019, 15, 1945–1961, doi:10.3762/bjoc.15.190

• cyclization takes place only from (S)-(−)-germacrene D, from which the absolute configuration of these substances can be derived. While the detected labeling patterns in our feeding experiments are in full agreement with the 1,3-hydride shift pathway, the cloning and functional characterization of the

N-(1-Phenylethyl)aziridine-2-carboxylate esters in the synthesis of biologically relevant compounds

• Iwona E. Głowacka,
• Aleksandra Trocha,
• Andrzej E. Wróblewski and
• Dorota G. Piotrowska

Beilstein J. Org. Chem. 2019, 15, 1722–1757, doi:10.3762/bjoc.15.168

• both pairs of ethyl esters [26]. When a mixture of tert-butyl esters (2R,1'S)-5d and (2S,1'S)-5d was subjected to kinetic resolution in the presence of potassium tert-butoxide in tetrahydrofuran (2R,1'S)-5d was produced with low 40% de [27]. The absolute configuration at C2 in esters 5 was established

• nucleophiles to provide 9 or even by catalytic hydrogenation to form 10. Thus, biologically important fragments like vicinal amino alcohols 11 or 2-amino-1,3-propanediols 12a [Nu = OH] can be obtained in highly enantioselective procedures preserving the absolute configuration at C2. The latter compounds are

• ,1′R,1''S)-28 prepared from the aziridine aldehyde (2R,1′S)-6 which provided the 2R absolute configuration of the final product while the configuration at C1' was created by a stereoselective addition of phenylmagnesium bromide (Scheme 20) [29]. The aziridine ring opening in (2R,1′R,1''S)-28 with

Synthesis, enantioseparation and photophysical properties of planar-chiral pillar[5]arene derivatives bearing fluorophore fragments

• Guojuan Li,
• Chunying Fan,
• Guo Cheng,
• Wanhua Wu and
• Cheng Yang

Beilstein J. Org. Chem. 2019, 15, 1601–1611, doi:10.3762/bjoc.15.164

• due to the bulky chromophore introduced, and the resolution of the enantiomers was achieved due to the bulky size of the fluorophores. The absolute configuration of the enantiomers was determined by circular dichroism (CD) spectra. The solvent-induced aggregation behavior was investigated with the

• Sp configured isomer, based on calculations as well as single-crystal X-ray diffraction published recently [20]. Thus, the absolute configuration of the first fraction was assigned to be Sp and the second fraction was assigned to the Rp isomer. Unexpectedly, no induced CD signals of DPA units at 360

Efficient resolution of racemic crown-shaped cyclotriveratrylene derivatives and isolation and characterization of the intermediate saddle isomer

• Sven Götz,
• Andreas Schneider and
• Arne Lützen

Beilstein J. Org. Chem. 2019, 15, 1339–1346, doi:10.3762/bjoc.15.133

• they bear a chiral cavity that can be used for molecular recognition [19]. Probably the most famous example for this behavior is the chiral discrimination and determination of the absolute configuration of the two enantiomers of CHFClBr using an enantioenriched cryptophane-C [20][21]. Other examples

• also recorded and are shown in Figure 1. When we then started to examine the racemization behavior of 1 by heating solutions of (+)-(M)-1 and (−)-(P)-1 (assignment of the absolute configuration of the enantiomer according to the assignment of Collet and Gottarelli [62]) in EtOH to 78 °C and determining

• of (+)-(M)-1 and (−)-(P)-1 measured in CH3CN; black: first eluted enantiomer (+)-(M)-1 (c = 1.06 × 10−4 M), red: second eluted enantiomer (−)-(P)-1 (c = 1.03 × 10−4 M) (assignment of the absolute configuration of the enantiomer according to the assignment of Collet and Gottarelli [62]). a

Enantioselective Diels–Alder reaction of anthracene by chiral tritylium catalysis

• Qichao Zhang,
• Jian Lv and
• Sanzhong Luo

Beilstein J. Org. Chem. 2019, 15, 1304–1312, doi:10.3762/bjoc.15.129

• sulfonylhydrazine 6 (1.2 equiv) in CH2Cl2 led to the desired N-tosylhydrazone 7 in 83% yield and with 82% ee (Scheme 3b). The absolute configuration was assigned on the basis of the structure of 7, which was confirmed unambiguously by an X-ray crystallographic study [39]. Tentative transition states to account for

Genomics-inspired discovery of massiliachelin, an agrochelin epimer from Massilia sp. NR 4-1

• Jan Diettrich,
• Hirokazu Kage and
• Markus Nett

Beilstein J. Org. Chem. 2019, 15, 1298–1303, doi:10.3762/bjoc.15.128

• yersiniabactin biosynthesis (Table S2, Supporting Information File 1), which led us to infer that the absolute configuration at C-19 is S. It was hence possible to predict the configuration of all stereocenters in 1 except C-15 by bioinformatics. To conclude the stereochemical analysis, we resorted to the NOESY