Utilizing the σ-complex stability for quantifying reactivity in nucleophilic substitution of aromatic fluorides

• Magnus Liljenberg,
• Tore Brinck,
• Tobias Rein and
• Mats Svensson

Beilstein J. Org. Chem. 2013, 9, 791–799, doi:10.3762/bjoc.9.90

• structure of the σ-complex resembles the rate-limiting transition state and that this provides a rationale for the observed correlations between the SS and the reaction rate. Keywords: computational; DFT; nucleophilic aromatic substitution; reactivity; substrate selectivity; reactive intermediates

4-Pyridylnitrene and 2-pyrazinylcarbene

• Curt Wentrup,
• Ales Reisinger and
• David Kvaskoff

Beilstein J. Org. Chem. 2013, 9, 754–760, doi:10.3762/bjoc.9.85

• -diazacyclohepta-1,2,4,6-tetraene (20). Further photolysis causes ring opening to the ketenimine 27. Keywords: carbene–nitrene interconversion; diazepines; flash vacuum thermolysis; matrix photochemistry; nitrile ylides; reactive intermediates; Introduction The carbene–nitrene interconversion exemplified with

3-Pyridylnitrene, 2- and 4-pyrimidinylcarbenes, 3-quinolylnitrenes, and 4-quinazolinylcarbenes. Interconversion, ring expansion to diazacycloheptatetraenes, ring opening to nitrile ylides, and ring contraction to cyanopyrroles and cyanoindoles

• Curt Wentrup,
• Nguyen Mong Lan,
• Adelheid Lukosch,
• Pawel Bednarek and
• David Kvaskoff

Beilstein J. Org. Chem. 2013, 9, 743–753, doi:10.3762/bjoc.9.84

• either the nitrenes or the diazacycloheptatetraenes to nitrile ylides. Keywords: carbene-nitrene interconversion; diazepines; flash vacuum thermolysis; matrix photochemistry; nitrile ylides; reactive intermediates; Introduction A multitude of rearrangements of heterocyclic nitrenes have been described

High-spin intermediates of the photolysis of 2,4,6-triazido-3-chloro-5-fluoropyridine

• Sergei V. Chapyshev,
• Denis V. Korchagin,
• Patrik Neuhaus and
• Wolfram Sander

Beilstein J. Org. Chem. 2013, 9, 733–742, doi:10.3762/bjoc.9.83

• spectroscopy; high-spin states; matrix isolation; nitrenes; photolysis; reactive intermediates; Introduction High-spin nitrenes are highly reactive intermediates formed during photolysis or thermolysis of aromatic polyazides. Both these processes are widely used in modern science and technology [1][2][3][4][5

Photoionisation of the tropyl radical

• Kathrin H. Fischer,
• Patrick Hemberger,
• Andras Bodi and
• Ingo Fischer

Beilstein J. Org. Chem. 2013, 9, 681–688, doi:10.3762/bjoc.9.77

• are reassigned to the C–C stretch mode ν16+ and to a combination of ν16+ with the ring breathing mode ν2+. Above 10.55 eV dissociative photoionisation of tropyl is observed, leading to the formation of C5H5+ and C2H2. Keywords: dissociative photoionisation; gas phase; reactive intermediates

• ; synchrotron radiation; threshold photoelectron spectroscopy; Introduction Organic radicals are known to be ubiquitous reactive intermediates in chemistry, biology and material science [1]. Studies on isolated radicals conducted in our group [2] yield their intrinsic properties, which are essential for

• synchrotron radiation [18][19][20]. Coincidence spectroscopy correlates the electron signal with the mass signal and thus permits recording of mass-selected photoelectron spectra. This is particularly advantageous in experiments on reactive intermediates where a clean sample generation cannot always be

Kinetics and mechanism of the anilinolysis of aryl phenyl isothiocyanophosphates in acetonitrile

• Hasi Rani Barai and
• Hai Whang Lee

Beilstein J. Org. Chem. 2013, 9, 615–620, doi:10.3762/bjoc.9.68

• . Keywords: anilinolysis; cross-interaction constant; deuterium kinetic isotope effects; phosphoryl transfer reaction; reactive intermediates; Y-aryl phenyl isothiocyanophosphates; Introduction The nucleophilic substitution reactions of tetracoordinate phosphorus have been studied extensively

New reactive intermediates in organic chemistry

• Götz Bucher

Beilstein J. Org. Chem. 2013, 9, 613–614, doi:10.3762/bjoc.9.67

• Gotz Bucher WestCHEM, School of Chemistry, University of Glasgow, Joseph-Black-Building, University Avenue, Glasgow G12 8QQ, United Kingdom 10.3762/bjoc.9.67 Keywords: reactive intermediates; Physical organic chemistry (POC) and reactive intermediate chemistry (RIC) belong to the core subjects

• Engineering and Physical Sciences Research Council of the UK (EPSRC) funded two Centres for Physical Organic Chemistry, one in Cardiff, and one in Glasgow, and launched two calls for research proposals in POC. Research into reactive intermediates has historically been part of the work involved in product

• , product studies can even yield accurate values for the kinetics of intermolecular quenching reactions of reactive intermediates. More recent techniques to characterise reactive intermediates include matrix isolation spectroscopy, where a reactive intermediate is generated in a cryogenic noble-gas matrix

A computational study of base-catalyzed reactions of cyclic 1,2-diones: cyclobutane-1,2-dione

• Nargis Sultana and
• Walter M. F. Fabian

Beilstein J. Org. Chem. 2013, 9, 594–601, doi:10.3762/bjoc.9.64

• . On the other hand, some other stable as well as highly reactive intermediates and/or transition states were obtained (see below). Generally, in nucleophilic addition reactions to carbonyl compounds in aqueous solution, water not only acts as a solvent but frequently actively participates in the

Caryolene-forming carbocation rearrangements

• Quynh Nhu N. Nguyen and
• Dean J. Tantillo

Beilstein J. Org. Chem. 2013, 9, 323–331, doi:10.3762/bjoc.9.37

• a hydrogen-bridged minimum. Both mechanisms are predicted to involve concerted suprafacial/suprafacial [2 + 2] cycloadditions, whose asynchronicity allows them to avoid the constraints of orbital symmetry. Keywords: carbocation; cycloaddition; density functional theory; mechanism; reactive

• intermediates; terpene; Introduction The cytotoxic sesquiterpenol caryol-1(11)-en-10-ol (1, Figure 1) was isolated by Barrow et al. in 1988 during an investigation of antiviral/antitumor compounds from New Zealand marine invertebrates [2]. Similar sesquiterpenoids were also found in Campanella fungi

Inter- and intramolecular enantioselective carbolithiation reactions

• Asier Gómez-SanJuan,
• Nuria Sotomayor and
• Esther Lete

Beilstein J. Org. Chem. 2013, 9, 313–322, doi:10.3762/bjoc.9.36

• concept to avoid the epimerization of reactive intermediates, which has allowed them to carry out the enantioselective version of the above procedure. Thus, the use of a flow microreactor system has allowed the enantioselective carbolithiation of conjugated enynes, followed by the reaction with

• intermediates that can be converted into various types of chiral ferrocene derivatives through diastereoselective ortho-lithiation [21]. Some years ago, the concept of flash chemistry was proposed, involving fast chemical synthesis by using flow microreactors, which enabled the use of highly reactive

• intermediates before they decompose [22][23][24][25]. Thus, Yoshida [26] demonstrated that the addition of aryllithiums, generated by halogen–lithium exchange, to conjugated enynes bearing an appropriate directing group occurs with complete regioselectivity and in good yields. More recently, they applied this

Presence or absence of a novel charge-transfer complex in the base-catalyzed hydrolysis of N-ethylbenzamide or ethyl benzoate

• Shinichi Yamabe,
• Wei Guan and
• Shigeyoshi Sakaki

Beilstein J. Org. Chem. 2013, 9, 185–196, doi:10.3762/bjoc.9.22

• minimal model of TS1 was proposed and was found to be insensitive to n. Keywords: basic hydrolyses; DFT calculations; ethyl benzoate; N-ethylbenzamide; reactive intermediates; transition states; Introduction Basic hydrolyses of esters and amides have been extensively studied experimentally [1]. Use of

The chemistry of bisallenes

• Henning Hopf and
• Georgios Markopoulos

Beilstein J. Org. Chem. 2012, 8, 1936–1998, doi:10.3762/bjoc.8.225

• bisallenes 4.2.3 Exocyclic bisallenes Bisallenes as reactive intermediates Bisallenes with heteroatoms in their tethers (heteroorganic bisallenes) 6.1 Thermally induced reactions of heteroorganic bisallenes 6.2 Transition metal-induced reactions of heteroorganic bisallenes Conclusion Acknowledgements

Photoreactions of cyclic sulfite esters: Evidence for diradical intermediates

• Rick C. White,
• Benny E. Arney Jr. and
• Heiko Ihmels

Beilstein J. Org. Chem. 2012, 8, 1208–1212, doi:10.3762/bjoc.8.134

• studies have revealed information on reactive intermediates, solvent effects, and stereochemical outcomes, while synthetic work has pointed to novel approaches for preparing various molecules. For example, deazetation reactions in solvents of increasing viscosity were employed to determine whether the

Highly selective synthesis of (E)-alkenyl-(pentafluorosulfanyl)benzenes through Horner–Wadsworth–Emmons reaction

• George Iakobson and
• Petr Beier

Beilstein J. Org. Chem. 2012, 8, 1185–1190, doi:10.3762/bjoc.8.131

• . In contrast to most of the reactions with 3, phosphonate 4 gave exclusively E-isomers of 6 (Table 3). This improved selectivity can be explained by relative differences in the stabilities and reactivities of carbanions derived from phosphonates and reactive intermediates. In reactions of phosphoryl

• )-(pentafluorosulfanyl)anilines, and the formation of (E)-1-alkenyl-4-(pentafluorosulfanyl)benzenes was demonstrated from diethyl 4-(pentafluorosulfanyl)benzylphosphonates. Proposed synthesis of alkenyl-(pentafluorosulfanyl)benzenes. Reactive intermediates involved in HWE reactions to alkenes 5 and 6. Diazotization

Synthesis of functionalized macrocyclic derivatives of trioxabicyclo[3.3.0]nonadiene

• Sabine Leber,
• Gert Kollenz and
• Curt Wentrup

Beilstein J. Org. Chem. 2012, 8, 738–743, doi:10.3762/bjoc.8.83

• with the bisdioxine unit has also been achieved recently [6]. Some of these materials exhibit pronounced complexation of metal ions, such as Cs+, Hg2+, Cu2+, Ag+, and Au3+ [5][6][7]. It may also be possible to stabilize reactive intermediates and unusual functional groups in the concave interiors of

Aryl nitrile oxide cycloaddition reactions in the presence of pinacol boronic acid ester

• Sarah L. Harding,
• Sebastian M. Marcuccio and
• G. Paul Savage

Beilstein J. Org. Chem. 2012, 8, 606–612, doi:10.3762/bjoc.8.67

• other 1,3-disubstituted compounds, through N–O bond cleavage [20]. Nitrile oxides are reactive intermediates that are usually generated in situ and react immediately with the dipolarophile. There have been many methods reported for the generation of nitrile oxides, but the most common one for alkyl

Intramolecular carbenoid ylide forming reactions of 2-diazo-3-keto-4-phthalimidocarboxylic esters derived from methionine and cysteine

• Marc Enßle,
• Stefan Buck,
• Roland Werz and
• Gerhard Maas

Beilstein J. Org. Chem. 2012, 8, 433–440, doi:10.3762/bjoc.8.49

• . It is therefore interesting to gather information about the chemoselectivity of these reactive intermediates. For intramolecular reactions, the ring size of the products can make an additional contribution to the observed chemoselectivity. In this study, we have addressed the competition between two

Asymmetric synthesis of quaternary aryl amino acid derivatives via a three-component aryne coupling reaction

• Elizabeth P. Jones,
• Peter Jones,
• Andrew J. P. White and
• Anthony G. M. Barrett

Beilstein J. Org. Chem. 2011, 7, 1570–1576, doi:10.3762/bjoc.7.185

• Arynes are exceptionally versatile reactive intermediates in organic synthesis. Not only are they able to participate in cycloaddition reactions, they also readily undergo addition reactions with nucleophiles, and the resultant aryl anions may be protonated or undergo alternative transformations [1][2][3

Recent developments in gold-catalyzed cycloaddition reactions

• Fernando López and
• José L. Mascareñas

Beilstein J. Org. Chem. 2011, 7, 1075–1094, doi:10.3762/bjoc.7.124

• intermediates that undergo subsequent intermolecular annulations with diverse partners. For example, in 2008, L. Zhang and coworkers demonstrated that a series of 1-(1-alkynyl)cyclopropyl ketones 8, previously used by Schmalz for the synthesis of furans [44], can be used as precursors of reactive intermediates

• = Me, R3 = H, X = C(CO2Me)2). These examples clearly demonstrate the possibility of modulating the electronic properties of reactive intermediates generated upon activation of allenes with Au(I) complexes, and thereby influence the reaction outcome. The development of intermolecular variants of gold

Homocoupling of aryl halides in flow: Space integration of lithiation and FeCl₃ promoted homocoupling

• Aiichiro Nagaki,
• Yuki Uesugi,
• Yutaka Tomida and
• Jun-ichi Yoshida

Beilstein J. Org. Chem. 2011, 7, 1064–1069, doi:10.3762/bjoc.7.122

• could also be applied to less stable aryllithium compounds that decompose very quickly. One of the major benefits of flow microreactor synthesis is the ability to use highly unstable reactive intermediates. Such intermediates can be rapidly generated and transferred to another location to be used in a

Chemistry in flow systems II

• Andreas Kirschning

Beilstein J. Org. Chem. 2011, 7, 1046–1047, doi:10.3762/bjoc.7.119

• highlight three areas. First of all, we have the application to photochemistry, which has the chance of experiencing a renaissance particularly in an industrial environment. Second, flow chemistry lends itself naturally to the synthesis and direct application of reactive intermediates or reactive reagents

When gold can do what iodine cannot do: A critical comparison

• Sara Hummel and
• Stefan F. Kirsch

Beilstein J. Org. Chem. 2011, 7, 847–859, doi:10.3762/bjoc.7.97

• presence of electrophilic iodine. The reader will also realize how gold-catalyzed processes, which mechanistically benefit from the carbenoid character [55][56][57][58] of the reactive intermediates, cannot be matched by electrophilic processes. As highlighted in the discussion, a starting substrate can be

Homoallylic amines by reductive inter- and intramolecular coupling of allenes and nitriles

• Peter Wipf and
• Marija D. Manojlovic

Beilstein J. Org. Chem. 2011, 7, 824–830, doi:10.3762/bjoc.7.94

• addition of zirconocene hydrochloride (Cp2Zr(H)Cl, Schwartz’s reagent) to π-bonds usually leads predominantly to σ-complexes, and the resulting organozirconocene complexes are valuable reactive intermediates for the formation of carbon–halogen and carbon–carbon bonds [1][2][3][4][5][6]. The reaction of

• reagents that could potentially serve as dianion equivalents and provide (E)-vinylsilanes and (E)-vinylstannanes in good yields [15]. N-Metalloimines are reactive intermediates that represent masked imine derivatives of ammonia, which are often unstable and difficult to prepare. A common method for the

Molecular rearrangements of superelectrophiles

• Douglas A. Klumpp

Beilstein J. Org. Chem. 2011, 7, 346–363, doi:10.3762/bjoc.7.45

• reactive intermediates may also undergo a wide variety of rearrangement-type reactions. Superelectrophilic rearrangements are often driven by charge–charge repulsive effects, as these densely charged ions react so as to maximize the distances between charge centers. These rearrangements involve reaction

Anion–π interactions influence pK_a values

• Christopher J. Cadman and
• Anna K. Croft

Beilstein J. Org. Chem. 2011, 7, 320–328, doi:10.3762/bjoc.7.42

• Supporting Information File 1. Discussion Intermolecular effects on molecules are widely recognised as being important in both binding and reactions, with solvent effects being the classic example of the latter. The effects of solvation on reactive intermediates can change the outcome of a reaction