Chemoenzymatic synthesis of the cardenolide rhodexin A and its aglycone sarmentogenin

• Fuzhen Song,
• Mengmeng Zheng,
• Dongkai Wang,
• Xudong Qu and
• Qianghui Zhou

Beilstein J. Org. Chem. 2025, 21, 2637–2644, doi:10.3762/bjoc.21.204

• , 17-deoxycortisone 5 could also be transformed into 4 in 65% yield after incubation in the Thamnostylum piriforme NBRC 6117 liquid medium (Table 1, entry 1). Notably, a major C9 α-hydroxylated side product 4' was also generated in 30% yield, which could be readily separated by column chromatography

Silica gel with covalently attached bambusuril macrocycle for dicyanoaurate sorption from water

• Michaela Šusterová and
• Vladimír Šindelář

Beilstein J. Org. Chem. 2025, 21, 2604–2611, doi:10.3762/bjoc.21.201

• stability of the prepared materials, we compared the behavior of SG-NHCO-BU1, SG-BU1, and SG-BnBU in different solvent systems (Supporting Information File 1, Figure S3). Chloroform, dichloromethane, and methanol were investigated due to their frequent use as mobile phases in liquid chromatography; aqueous

• conditions. While SG-BnBU and SG-NHCO-BU1 are suitable for dicyanoaurate sorption from aqueous solutions, SG-NHCO-BU1 and SG-BU1 could be used for anion extraction in organic media. Experimental Materials and instruments Silica gel (Silikagel 60 (0.015–0.040 mm) for column chromatography, product number

Recent advances in total synthesis of illisimonin A

• Juan Huang and
• Ming Yang

Beilstein J. Org. Chem. 2025, 21, 2571–2583, doi:10.3762/bjoc.21.199

• product. They resolved racemic intermediate 27 by derivatization with (S)-1-(1-naphthyl)ethyl isocyanate, followed by separation of the resulting diastereomers via silica gel chromatography (Scheme 3). By converting diastereomer 32 to (−)-illisimonin A, the absolute configuration of the natural product

Ni-promoted reductive cyclization cascade enables a total synthesis of (+)-aglacin B

• Si-Chen Yao,
• Jing-Si Cao,
• Jian Xiao,
• Ya-Wen Wang and
• Yu Peng

Beilstein J. Org. Chem. 2025, 21, 2548–2552, doi:10.3762/bjoc.21.197

• ] by flash column chromatography in 30% yield. The stereocontrolled formation of aryltetralin 13 could be attributed to an adoption of a pseudo-half-chair conformation 5a. Finally, the final step towards the total synthesis of (+)-aglacin B (2) was achieved by treatment with BF3·Et2O as the Lewis acid

Palladium-catalyzed regioselective C1-selective nitration of carbazoles

• Vikash Kumar,
• Jyothis Dharaniyedath,
• Aiswarya T P,
• Sk Ariyan,
• Chitrothu Venkatesh and
• Parthasarathy Gandeepan

Beilstein J. Org. Chem. 2025, 21, 2479–2488, doi:10.3762/bjoc.21.190

• mixture was filtered through a Celite pad, and the filtrate was concentrated using a rotary evaporator. The crude residue was purified through silica gel column chromatography using n-hexane/EtOAc 99:1 as eluent to give the pure C1-nitrated carbazole 2. ORTEP diagram of compound 2a (CCDC 2478298

Ex-situ generation of gaseous nitriles in two-chamber glassware for facile haloacetimidate synthesis

• Nikolai B. Akselvoll,
• Jonas T. Larsen and
• Christian M. Pedersen

Beilstein J. Org. Chem. 2025, 21, 2465–2469, doi:10.3762/bjoc.21.188

• turned out to be unsuccessful as the reaction seemed to achieve an equilibrium, with some amount of hemiacetal left. Generally, it was observed that the trifluoroacetimidates were somewhat more sensitive to flash column chromatography, suggesting a higher reactivity compared to the trichloroacetimidates

• were obtained when using purification by “dry column vacuum chromatography” [28], which allowed separation of anomers. In the seminal paper by Schmidt [29] dichloroacetimidates were also synthesized. They were described as too unreactive to be viable alternatives to the trichloro analogs. The synthesis

• of difluoroacetimidates was therefore attempted, but in our hands, these proved even more unstable than the trifluoroacetimidates and were not possible to isolate by chromatography due to decomposition. However, the purity of these compounds, after filtration through a block of silica gel, was

The high potential of methyl laurate as a recyclable competitor to conventional toxic solvents in [3 + 2] cycloaddition reactions

• Ayhan Yıldırım and
• Mustafa Göker

Beilstein J. Org. Chem. 2025, 21, 2389–2415, doi:10.3762/bjoc.21.184

• Chemistry, this study did not employ column chromatography for the isolation and purification of the products of interest from the reaction mixture. Otherwise, the yield of the reaction conducted in a castor oil medium would be similar to that of the other reactions. Furthermore, the rapid realization of

• on the recovery of solvents utilized in the aforementioned reaction (Figure 11). In addition, the completion of the cycloaddition reaction can be readily monitored through the utilization of Fourier-transform infrared (FTIR) spectroscopy and/or thin-layer chromatography (TLC) analysis (Figure 12). In

• potential environmental or health implications. Experimental All reagents and solvents were purchased from Merck (Merck, Darmstadt, Germany), Sigma-Aldrich (St. Louis, MO), or Acros Organics (Thermo Fisher Scientific, Geel, Belgium) and used without further purification. Thin-layer chromatography was

Recent advances in Norrish–Yang cyclization and dicarbonyl photoredox reactions for natural product synthesis

• Peng-Xi Luo,
• Jin-Xuan Yang,
• Shao-Min Fu and
• Bo Liu

Beilstein J. Org. Chem. 2025, 21, 2315–2333, doi:10.3762/bjoc.21.177

• -diketones, the rigid lattice structure locks molecules into a specific conformation, limiting access to certain γ-hydrogens for abstraction and thus enhancing regioselectivity [42]. Enantiopure 87 was obtained by preparative chiral supercritical fluid chromatography (SFC) resolution of the racemate, while

Halogenated butyrolactones from the biomass-derived synthon levoglucosenone

• Johannes Puschnig,
• Martyn Jevric and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2025, 21, 2297–2301, doi:10.3762/bjoc.21.175

• converted into the silyl enol ether 12 and treated with Selectfluor, fluorinated ketone 13 was formed as the major product after aqueous workup (Scheme 2). When the solution of 13 was concentrated following flash column chromatography, rapid decomposition was observed, which may explain failures with many

A chiral LC–MS strategy for stereochemical assignment of natural products sharing a 3-methylpent-4-en-2-ol moiety in their terminal structures

• Rei Suo,
• Raku Irie,
• Hinako Nakayama,
• Yuta Ishimaru,
• Yuya Akama,
• Masato Oikawa and
• Shiro Itoi

Beilstein J. Org. Chem. 2025, 21, 2243–2249, doi:10.3762/bjoc.21.171

• absolute configuration of scarce natural products, including heptavalinamide A [11] and poecillastrin C [12][13] by a combination of chemical degradation, chemical synthesis, and liquid chromatography–mass spectrometry (LC–MS) analysis. The 3-methylpent-4-en-2-ol (MPO) moiety is commonly found at the

• -hydroxy-2-methylbutanoate (3) [25][26]. We then explored LC–MS conditions for their separation. In our initial trial, the stereoisomeric mixture of 3 was successfully separated by preparative high performance liquid chromatography (HPLC) using a chiral column (data not shown). However, each stereoisomer

Thiadiazino-indole, thiadiazino-carbazole and benzothiadiazino-carbazole dioxides: synthesis, physicochemical and early ADME characterization of representatives of new tri-, tetra- and pentacyclic ring systems and their intermediates

• Gyöngyvér Pusztai,
• László Poszávácz,
• Anna Vincze,
• András Marton,
• Ahmed Qasim Abdulhussein,
• Judit Halász,
• András Dancsó,
• Gyula Simig,
• György Tibor Balogh and
• Balázs Volk

Beilstein J. Org. Chem. 2025, 21, 2220–2233, doi:10.3762/bjoc.21.169

• (according to LC–MS) was always the (E) isomer. However, in the case of compounds 7c and 7h, the (Z) isomers were present in relatively high quantities and could also be successfully isolated and characterized after flash chromatography. The configuration of the C=N double bond was determined on the basis of

• spectrometer equipped with a Direct Insertion Probe (EI+ ionization) or on a Bruker Q-TOF Maxis Impact mass spectrometer (ESI+ ionization) coupled with a Waters Acquity I-Class UPLC system equipped with a diode array detector. The reactions were followed by analytical thin-layer chromatography on silica gel 60

• transferred to LC vials and stored at −20 °C until LC–MS/MS analysis. The concentration of the parent compound remaining in each sample was determined using liquid chromatography coupled with tandem mass spectrometry (LC–MS/MS). The percentage of the remaining substrate was calculated relative to the time

A m-quaterphenyl probe for absolute configurational assignments of primary and secondary amines

• Yuka Takeuchi,
• Mutsumi Kobayashi,
• Yuuka Gotoh,
• Mari Ikeda,
• Yoichi Habata,
• Tomohiko Shirai and
• Shunsuke Kuwahara

Beilstein J. Org. Chem. 2025, 21, 2211–2219, doi:10.3762/bjoc.21.168

• structure analysis was performed on a Bruker SMART diffractometer equipped with a CCD area detector at 120 K. Silica gel 60 F254 precoated plates on glass from Merck Ltd. were used for thin-layer chromatography (TLC). General procedure for the synthesis of conjugates 2a–h (S)-2-[2,10-Bis(4-methoxyphenyl

• of Celite, and then evaporated to dryness. The crude product was purified by column chromatography on silica gel (EtOAc) to yield amine (S)-2a (203 mg, 83% yield) as colorless solid: mp 164.2–165.5 °C; 1H NMR (400 MHz, CDCl3) δ 7.73 (d, J = 1.8 Hz, 2H), 7.62–7.56 (m, 6H), 7.44 (d, J = 7.8 Hz, 2H

Synthesis of triazolo- and tetrazolo-fused 1,4-benzodiazepines via one-pot Ugi–azide and Cu-free click reactions

• Xiaoming Ma,
• Zijie Gao,
• Jiawei Niu,
• Wentao Shao,
• Shenghu Yan,
• Sai Zhang and
• Wei Zhang

Beilstein J. Org. Chem. 2025, 21, 2202–2210, doi:10.3762/bjoc.21.167

• mixture was evaporated to remove MeOH solvent and the residue was redissolved in MeCN (2 mL) and heated at 130 °C for 2 h in a sealed vial. After the reaction had reached completion as monitored by TLC, the reaction mixture was concentrated in vacuo. Column chromatography on silica gel afforded products

α-Ketoglutaric acid in Ugi reactions and Ugi/aza-Wittig tandem reactions

• Vladyslav O. Honcharov,
• Yana I. Sakhno,
• Olena H. Shvets,
• Vyacheslav E. Saraev,
• Svitlana V. Shishkina,
• Tetyana V. Shcherbakova and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2021–2029, doi:10.3762/bjoc.21.157

• chromatography. Subsequently, the compounds 8a,b,d,f–h were dissolved in DCM and stirred in the presence of a stoichiometric amount of triphenylphosphine at 20 °C for 12 hours, resulting in the formation of 3-(4-(1-aryl-2-(tert-butylamino)-2-oxoethyl)-3-oxo-3,4-dihydroquinoxalin-2-yl)propanoic acids 9a,b,d,f–h

• sufficiently electrophilic carbonyl carbon atom with the elimination of triphenylphosphine oxide via the aza-Wittig reaction. It should be noted that the best method for the isolation of quinoxalinones 9 was column chromatography using an elution gradient of hexane/ethyl acetate 3:1 to hexane/ethyl acetate 1:2

Aryl iodane-induced cascade arylation–1,2-silyl shift–heterocyclization of propargylsilanes under copper catalysis

• Rasma Kroņkalne,
• Rūdolfs Beļaunieks,
• Armands Sebris,
• Anatoly Mishnev and
• Māris Turks

Beilstein J. Org. Chem. 2025, 21, 1984–1994, doi:10.3762/bjoc.21.154

• standard column chromatography techniques (30–50% DCM). Iodanes, containing electron-rich aryl groups (p-Tol, m-MeO-C6H4, Ph) or halogens (Br, F) gave the highest tetrahydrofuran 8 yields (70–83%). In contrast, electron-withdrawing group-containing iodanes, especially those holding nucleophilic heteroatoms

Photochemical reduction of acylimidazolium salts

• Michael Jakob,
• Nick Bechler,
• Hassan Abdelwahab,
• Fabian Weber,
• Janos Wasternack,
• Leonardo Kleebauer,
• Jan P. Götze and
• Matthew N. Hopkinson

Beilstein J. Org. Chem. 2025, 21, 1973–1983, doi:10.3762/bjoc.21.153

• higher reduction potential of this comparatively electron-rich compound. Purification of the crude reaction mixture from 1 by column chromatography allowed for the isolation of pure product 5 as a colorless oil in 59% yield. A control reaction performed under the same conditions in the dark resulted only

Synthesis of N-doped chiral macrocycles by regioselective palladium-catalyzed arylation

• Shuhai Qiu and
• Junzhi Liu

Beilstein J. Org. Chem. 2025, 21, 1917–1923, doi:10.3762/bjoc.21.149

• existence of inherent chirality for both MC1 and MC3, chiral resolutions using chiral high-performance liquid chromatography (HPLC) were performed. Due to insufficient solubility, MC3 failed in chiral separation via preparative chiral columns. Fortunately, two enantiomers of MC1 were successfully isolated

Stereoselective electrochemical intramolecular imino-pinacol reaction: a straightforward entry to enantiopure piperazines

• Margherita Gazzotti,
• Fabrizio Medici,
• Valerio Chiroli,
• Laura Raimondi,
• Sergio Rossi and
• Maurizio Benaglia

Beilstein J. Org. Chem. 2025, 21, 1897–1908, doi:10.3762/bjoc.21.147

• CH2Cl2 (3 × 10 mL). The combined organic layers were dried over Na2SO4, filtered and concentrated under vacuum. The reaction crude was purified by flash column chromatography on silica gel (n-hexane/ethyl acetate 8:2) to give the desired pure product. General procedure for in-flow electrochemical imino

• purified through flash column chromatography on silica gel to give the isolated pure product. X-ray determined structure of chiral piperazine 2b. Synthesis of vicinal diamines via imino-pinacol coupling in the presence of metal-based reductants. Light-promoted imino-pinacol coupling for the synthesis of

Preparation of spirocyclic oxindoles by cyclisation of an oxime to a nitrone and dipolar cycloaddition

• Beth L. Ritchie,
• Alexandra Longcake and
• Iain Coldham

Beilstein J. Org. Chem. 2025, 21, 1890–1896, doi:10.3762/bjoc.21.146

• chromatography on silica gel. The structure of this isomer could not be ascertained with certainty from NOESY analysis and initial crystallisation attempts were unsuccessful. However, through use of encapsulated nanodroplet crystallisation (ENaCt), a high-throughput crystallisation technique which controls the

• bridged azabicyclic ring system found in alstonoxine A and related alkaloids. Experimental Chemicals described were obtained from commercial suppliers and were used without further purification. Solvents were obtained from a Grubbs dry solvent system. Thin-layer chromatography was performed on Merck

• silica gel 60F254 plates and visualised by UV irradiation at 254 nm or by staining with an alkaline KMnO4 dip. Flash column chromatography was performed using silica gel (40–63 micron mesh). Infrared spectra were recorded on a Perkin Elmer Spectrum RX Fourier Transform–IR System and only selected peaks

Unique halogen–π association detected in single crystals of C–N atropisomeric N-(2-halophenyl)quinolin-2-one derivatives and the thione analogue

• Mai Uchibori,
• Nanami Murate,
• Kanako Shima,
• Tatsunori Sakagami,
• Ko Kanehisa,
• Gary James Richards,
• Akiko Hori and
• Osamu Kitagawa

Beilstein J. Org. Chem. 2025, 21, 1748–1756, doi:10.3762/bjoc.21.138

• poor (11% ee and 9% ee) [31]. In addition, rotational stability about the C–N bond in 1a,b was not mentioned at all. We prepared racemates rac-1a,b in accordance with Scheme 1 and separated their enantiomers [(P)-1a,b and (M)-1a,b] through medium pressure liquid chromatography (MPLC) using a semi

Preparation of a furfural-derived enantioenriched vinyloxazoline building block and exploring its reactivity

• Madara Darzina,
• Anna Lielpetere and
• Aigars Jirgensons

Beilstein J. Org. Chem. 2025, 21, 1737–1741, doi:10.3762/bjoc.21.136

• analogously from ester R-3d. Thus, Alloc was validated as non-expensive and relatively small N-protecting group, removal of which is compatible with double bond and acetal function of amides S-5 and R-5. The removal of the Pd catalyst at laboratory scale was done by chromatography. For large scale synthesis

• MeOH with acetic acid as an additive. This is a step toward the large scale synthesis of enantioenriched vinyloxazolines 6 from biomass-derived furfural, however, several challenges remain such as replacing LiClO4 as electrolyte at the oxidation step and avoiding chromatography for purification

Convenient alternative synthesis of the Malassezia-derived virulence factor malassezione and related compounds

• Karu Ramesh and
• Stephen L. Bearne

Beilstein J. Org. Chem. 2025, 21, 1730–1736, doi:10.3762/bjoc.21.135

• nitrogen source followed by thin-layer chromatography and reversed-phase (RP)-HPLC to isolate and purify the compound from a complex mixture of indole alkaloids [11], (ii) prepared by aerobic incubation of indole-3-pyruvic acid at pH 7.4, 37 °C for 24 h followed by isolation and purification using RP-HPLC

• , ON, Canada). Reactions were monitored using thin-layer chromatography on aluminium-backed silica plates (Sigma-Aldrich) using either UV-light (254 nm), iodine, KMnO4, phosphomolybdic acid, or p-anisaldehyde for visualization. Tetrahydrofuran (THF) was dried and distilled over sodium/benzophenone

• ), and brine (100 mL). After drying over anhydrous MgSO4, the solvent was removed in vacuo and the crude product was purified by flash chromatography on silica gel (EtOAc/hexane; gradient 1:10 → 1:2) to give 21 as a colorless solid (6.7 g, 80%, 2 steps); Rf = 0.5 (EtOAc/hexane 1:2); mp 50–52 °C (lit. mp

3,3'-Linked BINOL macrocycles: optimized synthesis of crown ethers featuring one or two BINOL units

• Somayyeh Kheirjou,
• Jan Riebe,
• Maike Thiele,
• Christoph Wölper and
• Jochen Niemeyer

Beilstein J. Org. Chem. 2025, 21, 1719–1729, doi:10.3762/bjoc.21.134

• ][17][18][19][20][21][22][23] and more [24]. Especially BINOL-based crown ethers proved to be highly useful and were applied for stereoselective molecular recognition [25][26][27], for catalysis [25][28][29][30][31], as stationary phases for chromatography [32][33][34], but also as building blocks for

Structural analysis of stereoselective galactose pyruvylation toward the synthesis of bacterial capsular polysaccharides

• Tsun-Yi Chiang,
• Mei-Huei Lin,
• Chun-Wei Chang,
• Jinq-Chyi Lee and
• Cheng-Chung Wang

Beilstein J. Org. Chem. 2025, 21, 1671–1677, doi:10.3762/bjoc.21.131

• , a one-pot synthesis approach was applied to successfully and quickly construct disaccharide 10. In this protocol, donor 7 was first activated by the TolSCl/AgOTf promoter and reacted with 6 to form compound 8. The reaction progress was monitored by thin-layer chromatography. Subsequently, in the

Synthesis of optically active folded cyclic dimers and trimers

• Ena Kumamoto,
• Kana Ogawa,
• Kazunori Okamoto and
• Yasuhiro Morisaki

Beilstein J. Org. Chem. 2025, 21, 1603–1612, doi:10.3762/bjoc.21.124

• diiodobenzene 5 using a Pd2(dba)3/PPh3/CuI catalytic system in toluene and Et3N under diluted conditions (monomer concentration = approximately 1.3 × 10−3 M) was performed. The corresponding cyclic dimer (Sp)-6 and trimer (Sp)-7 were detected mainly by thin-layer chromatography (TLC) and separated roughly using

• simple SiO2 column chromatography. In addition, they were purified using a recyclable high-performance liquid chromatography (HPLC) to remove unidentified impurities to obtain (Sp)-6 and (Sp)-7 in 16% and 3% isolated yields, respectively. The ultraviolet–visible (UV–vis) absorption spectra and normalized

• standard. Analytical thin-layer chromatography (TLC) was performed with silica gel 60 Merck F254 plates. Column chromatography was performed with silica gel 60N (spherical neutral). Recyclable preparative high-performance liquid chromatography (HPLC) was carried out on a Japan Analytical Industry Model