Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

• Lucía Campos-Prieto,
• Aitor García-Rey,
• Eddy Sotelo and
• Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

• this study, they employed the Bucherer–Bergs reaction, a versatile multicomponent reaction which enables the formation of a hydantoin that represents a masked amino acid functionality (Scheme 21). After subsequent saponification and acidification, the desired compound crystallizes along with impurities

Hypervalent iodine-mediated intramolecular alkene halocyclisation

• Charu Bansal,
• Oliver Ruggles,
• Albert C. Rowett and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 3113–3133, doi:10.3762/bjoc.20.258

• of a range of N-allyl carboxamides 31 with PhI(OAc)2 and TMSBr formed 5-bromomethyl-2-oxazolines 71 in excellent yields. In 2015, Wang and co-workers reported the bromocyclisation of allylamino alcohols 72 to give chiral morpholines 73 (Scheme 38) [56]. Using an amino acid-derived chiral HVI reagent

• formed a range of 5-iodomethyl-2-aryloxazolines 84 in good yields (Scheme 45). In addition to the synthesis of brominated morpholines, Wang and co-workers reported the synthesis of chiral iodinated morpholines 85 (Scheme 46) [56]. Using an amino acid-derived chiral iodine(III) reagent with KI and NaOAc

• . Iodoetherification of 2,2-diphenyl-4-penten-1-carboxylic acid (47’) and 2,2-diphenyl-4-penten-1-ol (47). Synthesis of 5-iodomethyl-2-oxazolines. Synthesis of chiral iodinated morpholines. aFrom the ʟ-form of the amino acid starting material. The dr values were determined by 1H NMR given in parentheses

Advances in the use of metal-free tetrapyrrolic macrocycles as catalysts

• Mandeep K. Chahal

Beilstein J. Org. Chem. 2024, 20, 3085–3112, doi:10.3762/bjoc.20.257

• other binding sites required for substrate binding and/or promotion of the catalytic activity. Past studies have shown that modifying the porphyrin core with urea functionalities and amino acid substituents leads to the formation of ureaporphyrins, which significantly enhance sugar binding in non-polar

Chemical structure metagenomics of microbial natural products: surveying nonribosomal peptides and beyond

• Thomas Ma and
• John Chu

Beilstein J. Org. Chem. 2024, 20, 3050–3060, doi:10.3762/bjoc.20.253

• identity of the amino acid BB it recognizes and activates, can be predicted based on its gene sequence alone [40]. Numerous prediction algorithms of this kind have been reported since [40][41][42][43][44][45][46][47][48][49]. The A domains are highly conserved in terms of both structure and sequence [41

• , respectively. Based on the position of the nucleophile, a NRP can be cyclized head-to-tail, via an amino acid side-chain, a nucleophilic heteroatom on the N-terminal fatty acyl chain, or as a multimer of repeating sub-structures (Figure 5b). The ring size, ratio of ʟ- and ᴅ-amino acids, etc. may also be the

• studies, because translating their modular biosynthetic logic into a chemical synthetic scheme is rather straightforward [86]. Aside from constructing the core molecular scaffold of these natural products, further modifications may be installed either before or after the assembly of the amino acid or

gem-Difluorovinyl and trifluorovinyl Michael acceptors in the synthesis of α,β-unsaturated fluorinated and nonfluorinated amides

• Monika Bilska-Markowska,
• Marcin Kaźmierczak,
• Wojciech Jankowski and
• Marcin Hoffmann

Beilstein J. Org. Chem. 2024, 20, 2946–2953, doi:10.3762/bjoc.20.247

• remarkable stereoselectivity, a finding elucidated by DFT analysis. These results mark significant progress toward the synthesis of novel fluorinated building blocks. Our team is currently exploring the application of this methodology to amino acid substrates, aiming to contribute further to the burgeoning

Recent advances in transition-metal-free arylation reactions involving hypervalent iodine salts

• Ritu Mamgain,
• Kokila Sakthivel and
• Fateh V. Singh

Beilstein J. Org. Chem. 2024, 20, 2891–2920, doi:10.3762/bjoc.20.243

• factors like steric hindrance. The ring opening proceeded smoothly when nucleophiles with higher nucleophilicity are used yielding up to 99% of the desired products 43. The N-arylation of amino acid esters 44 was established with the utility of substituted phenyl(anisyl)iodonium triflate salts 45 (Scheme

N-Glycosides of indigo, indirubin, and isoindigo: blue, red, and yellow sugars and their cancerostatic activity

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 2840–2869, doi:10.3762/bjoc.20.240

• , and Parkinson's disease, cardiovascular diseases, inflammation, AIDS and others have their origin in context with the activities of protein kinases, such as glycogen synthase kinase-3 (GSK-3β) and cyclin-dependent kinases (CDK’s). The phosphorylation of the amino acid moieties of several enzymes is

Synthesis and antimycotic activity of new derivatives of imidazo[1,2-a]pyrimidines

• Dmitriy Yu. Vandyshev,
• Daria A. Mangusheva,
• Khidmet S. Shikhaliev,
• Kirill A. Scherbakov,
• Oleg N. Burov,
• Alexander D. Zagrebaev,
• Tatiana N. Khmelevskaya,
• Alexey S. Trenin and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2024, 20, 2806–2817, doi:10.3762/bjoc.20.236

• ) Superposition of docked compounds 4a–e and 5e in a CYP51 ACb. aThe amino acid residues of the protein are colored green, compound 4e is colored gold and the haem is colored grey. The heterocyclic nitrogen of compound 5e appears to be orientated towards iron and is located 2.8 Å away from it, which may indicate

Applications of microscopy and small angle scattering techniques for the characterisation of supramolecular gels

• Connor R. M. MacDonald and
• Emily R. Draper

Beilstein J. Org. Chem. 2024, 20, 2608–2634, doi:10.3762/bjoc.20.220

• structures formed by the self-assembly of amino acid-appended perylene bisimides (PBIs) [83]. They found that the average fibre length was a critical nanostructural feature for affording a desirable mechanoresponsive property, that is the change in conductivity under a bending force, in PBI films. Therefore

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

• Nian Li,
• Ruzal Sitdikov,
• Ajit Prabhakar Kale,
• Joost Steverlynck,
• Bo Li and
• Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

Tandem diazotization/cyclization approach for the synthesis of a fused 1,2,3-triazinone-furazan/furoxan heterocyclic system

• Yuri A. Sidunets,
• Valeriya G. Melekhina and
• Leonid L. Fershtat

Beilstein J. Org. Chem. 2024, 20, 2342–2348, doi:10.3762/bjoc.20.200

• , furoxancarboxamides 2f–h bearing aliphatic substituents or amino acid residues also smoothly underwent the studied tandem protocol and the corresponding biheterocyclic compounds 1f–h were obtained in yields of 45–77%. After having developed a general method for the synthesis of target furoxanotriazinones 1a–h, we

• found to be suitable for the preparation of a library of new biheterocyclic molecules bearing aromatic and aliphatic substituents as well as incorporating amino acid residues. The obtained furoxanotriazinones have demonstrated a moderate NO-releasing ability across a wide range of concentrations under

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• and amino acid remain unknown. In contrast, the peptide-level identification is focused on the characterization of the actual probe-modified peptides. It might be more challenging as a larger protein amount to start with is necessary and the fragments of the probe-modified peptides may not be trivial

• , in this case, the cysteine thiols were derivatized and the cysteine C–S bond was previously described to be susceptible to fragmentation, the fragments containing the thiol provide the information on the structure of the modified amino acid side chain [107][108]. Although the study was focused on the

Stereoselective mechanochemical synthesis of thiomalonate Michael adducts via iminium catalysis by chiral primary amines

• Michał Błauciak,
• Dominika Andrzejczyk,
• Błażej Dziuk and
• Rafał Kowalczyk

Beilstein J. Org. Chem. 2024, 20, 2313–2322, doi:10.3762/bjoc.20.198

• planetary mill. Further variations of system A concerned the acid’s role. However, no impact of the acid was noted while using the amino acid derivative AC-2, but the dramatic loss of selectivity was observed in the case of chiral phosphoric acid’s application AC-3. Thus, it is rather unlikely the iminium

Deuterated reagents in multicomponent reactions to afford deuterium-labeled products

• Kevin Schofield,
• Shayna Maddern,
• Yueteng Zhang,
• Grace E. Mastin,
• Rachel Knight,
• Wei Wang,
• James Galligan and
• Christopher Hulme

Beilstein J. Org. Chem. 2024, 20, 2270–2279, doi:10.3762/bjoc.20.195

• Strecker reaction [44][45] where a cyanide, aldehyde, and amine react to afford α-aminonitriles. Compound 5c was converted to the deuterated amino acid 5d under acidic conditions. This finding opens up the possibility of scale-production of deuterium-labeled α-amino acids. Deuterated Strecker products are

Cell-free protein synthesis with technical additives – expanding the parameter space of in vitro gene expression

• Tabea Bartsch,
• Stephan Lütz and
• Katrin Rosenthal

Beilstein J. Org. Chem. 2024, 20, 2242–2253, doi:10.3762/bjoc.20.192

• used to establish a reference CFPS synthesis under standard conditions containing 2% PEG-8000. A concentration of 1.77 mg/mL sfGFP was obtained after 4 hours. The calculated fractional yield of 114% based on the added amino acid concentration is higher than expected, which can be explained either by

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• -translational modifications, including glycosylation, in which a carbohydrate chain is directly attached to a specific amino acid to generate glycoproteins and proteoglycans [27]. Based on the amino acid involved in the link with the carbohydrates chain, it is possible to classify different types of

• its amino acid sequence and the structure of a related protein that is already known. However, also template-free PSP has obtained significant progress recently via machine learning and search-based optimisation approaches [87]. There are several software programs and tools available for homology

• effective drug design. Moreover, ab initio prediction of a protein's structure only from its amino acid sequence remains unsolved. Accessing Rosetta molecular modelling software tools (https://www.rosettacommons.org/software) has traditionally required expertise in the Unix command line environment

Negishi-coupling-enabled synthesis of α-heteroaryl-α-amino acid building blocks for DNA-encoded chemical library applications

• Matteo Gasparetto,
• Balázs Fődi and
• Gellért Sipos

Beilstein J. Org. Chem. 2024, 20, 1922–1932, doi:10.3762/bjoc.20.168

• applicable to a broad range of substrates, however, it utilizes a catalyst that is not commercially available and small heteroaromatic rings are underrepresented in the scope. Recognizing the importance of small heteroaromatic rings and the amino acid motif in medicinal chemistry [30][31][32][33], and aiming

Access to 2-oxoazetidine-3-carboxylic acid derivatives via thermal microwave-assisted Wolff rearrangement of 3-diazotetramic acids in the presence of nucleophiles

• Ivan Lyutin,
• Vasilisa Krivovicheva,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 1894–1899, doi:10.3762/bjoc.20.164

• derivatives (mainly amides) exhibit various types of biological activity, among which the following can be highlighted: inhibition of β-lactamases [4][5], antitubercular properties [6], antiproliferative and antibacterial activity [7], herbicidal properties [8][9], inhibition of neutral amino acid transporter

2-Heteroarylethylamines in medicinal chemistry: a review of 2-phenethylamine satellite chemical space

• Carlos Nieto,
• Alejandro Manchado,
• Ángel García-González,
• David Díez and
• Narciso M. Garrido

Beilstein J. Org. Chem. 2024, 20, 1880–1893, doi:10.3762/bjoc.20.163

• -heteroarylethylamine chemical space is constituted by the biogenic amine histamine (43). In a similar fashion as dopamine and epinephrine produced from ʟ-phenylalanine along the catecholamine pathway, histamine is generated from the amino acid ʟ-histidine (42) via enzymatic decarboxylation promoted by ʟ-histidine

• diffusion features related to these changes. The amino acid ʟ-histidine has attracted the attention of the medicinal chemistry community due to its properties not only in the aforementioned histaminergic system, but also as metal-ion chelator, proton buffering modulator, and antioxidant. Considering the

• originally synthesized by Palazzo et al. [76] and several other derivatives were developed based on ethylamine-chain homologation [77]. Triazoles: Hall and co-workers [78] developed 1,2,3-triazolyl analogues 111 of ʟ-histidine for ʟ-type amino acid transporter 1 (LAT1) activity, a sodium-independent membrane

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity

• Moisés Alejandro Alejo Hernandez,
• Katia Pamela Villavicencio Sánchez,
• Rosendo Sánchez Morales,
• Karla Georgina Hernández-Magro Gil,
• David Silverio Moreno-Gutiérrez,
• Eddie Guillermo Sanchez-Rueda,
• Yanet Teresa-Cruz,
• Brian Choi,
• Armando Hernández Garcia,
• Alba Romero-Rodríguez,
• Oscar Juárez,
• Siseth Martínez-Caballero,
• Mario Figueroa and
• Corina-Diana Ceapă

Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159

• resulting peptides exhibit unique structural features due to thioether bridges between dehydrated serine or threonine (Dha/Dhb) and cysteine (Cys). These thioether bridges lead to cyclic peptides with the modified amino acid lanthionine (Dha-Cys) or methyllanthionine (Dhb-Cys). The strong antimicrobial

• localize novel evolutive clades This study used 28 amino acid sequences of LanM enzymes from MIBiG [38] whose activity has been experimentally proven [24] to identify homologous sequences using BLASTP [39] (in BV-BRC [40]). They are considered our reference sequences. Two of these reference sequences are

• enzymes amino acid sequences from MIBiG and the homologs identified in our study. The taxonomy of the bacteria to which they belong is indicated in the figure. The selected superclade highlighted in Figure 1, containing sequences that mainly belong to Bacilli and Clostridia, was of particular interest

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• pentacyclic core scaffold of 5. Overall, the single NRPS module SfmC is responsible for the construction of the highly functionalized scaffold 93 from the two simple amino acid derivatives 86 and 88. After NRPS-catalyzed scaffold assembly, SfmM1-mediated N-methylation at N12, and subsequent SfmO2/O4-promoted

• synthesis of the bis-THIQ alkaloid family, Oguri and Oikawa utilized the NRPS module SfmC to construct a highly functionalized scaffold from amino acid derivatives (Scheme 10) [102]. The total synthesis of 5 from original biosynthetic intermediate 93 requires regioselective amide bond cleavage to remove the

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• the specialised metabolism of bacteria and fungi. Each NRPS module is minimally composed of a condensation (C) domain, an adenylation (A) domain, and a peptidyl carrier protein (PCP or thiolation/T domain), and one module typically incorporates one amino acid into the final natural product. In

• [34]. In reductive amination, the substrate is usually an aldehyde or amine. After the formation of the iminium ion, it is reduced with the appropriate reagent to form the N-methylated amino acid. Different methods have been established using for example benzaldehyde as a protection group, sodium

• intermediate is then reduced with H2 [37]. When synthesising via a reductive ring opening, typically, an N-Fmoc-protected amino acid is condensed with formaldehyde in the presence of p-toluic acid in refluxing toluene to yield the 5-oxazolidinone. Reductive ring opening can be achieved by using an excess of

Mining raw plant transcriptomic data for new cyclopeptide alkaloids

• Draco Kriger,
• Michael A. Pasquale,
• Brigitte G. Ampolini and
• Jonathan R. Chekan

Beilstein J. Org. Chem. 2024, 20, 1548–1559, doi:10.3762/bjoc.20.138

• biosynthetic enzymes. Ultimately proteolysis releases the modified core peptide as the mature RiPP natural product [5][6]. In the case of the newly described burpitide family of RiPPs, the defining feature is the presence of amino acid side-chain crosslinks installed by a copper-dependent burpitide cyclase [4

• ]. These RiPP natural products encompass a wide range of structural scaffolds including cyclopeptide alkaloids that contain a phenolic ether-linkage and the lyciumin-type peptides that are composed of a crosslink between the Trp-indole-N and the carbon in another amino acid side chain or peptide backbone

• were prepared to match the core amino acids of the predicted ceanothine B and CAM603 cyclopeptide alkaloids. To make each amino acid standard, 0.2 mg of the ʟ- and ᴅ-amino acid was aliquoted into separate reaction vials. To each vial, 50 µL of water, 20 µL of 1 M NaHCO3, and 100 µL 1% Marfey’s reagent