Synthesis of monophosphorylated lipid A precursors using 2-naphthylmethyl ether as a protecting group

• Jundi Xue,
• Ziyi Han,
• Gen Li,
• Khalisha A. Emmanuel,
• Cynthia L. McManus,
• Qiang Sui,
• Dongmian Ge,
• Qi Gao and
• Li Cai

Beilstein J. Org. Chem. 2020, 16, 1955–1962, doi:10.3762/bjoc.16.162

• problematic synthesis of monophosphorylated mono- and disaccharide lipid X using a combination of established chemistry and a novel 2-naphthylmethyl ether (Nap) protecting group for “permanent” protection of hydroxy groups. Of particular note is the fact that the key Nap protecting group is able to remain in

• compound 13. Then, (2-naphthyl)methylene acetal [21] was used to protect the C-4,6-hydroxy groups using 2-naphthaldehyde dimethyl acetal and 0.2 equiv of camphorsulfonic acid (CSA). These protecting group manipulations resulted in the exposure of the C-3 hydroxy group in compound 14 for further acylation

• prepared from the common building block 15 through multiple protecting group manipulations (Scheme 2). The N-Troc group in 15 was removed by treatment with zinc in a mixture of acetic acid and CH2Cl2. The resulting amine 16 was protected immediately as fluorenylmethylenoxy (Fmoc) carbamate by reaction with

Synthesis, docking study and biological evaluation of ᴅ-fructofuranosyl and ᴅ-tagatofuranosyl sulfones as potential inhibitors of the mycobacterial galactan synthesis targeting the galactofuranosyltransferase GlfT2

• Marek Baráth,
• Jana Jakubčinová,
• Zuzana Konyariková,
• Stanislav Kozmon,
• Katarína Mikušová and
• Maroš Bella

Beilstein J. Org. Chem. 2020, 16, 1853–1862, doi:10.3762/bjoc.16.152

• gave 11 in good yield. Likewise, 6-O-benzyl derivative 12 was prepared to reduce reaction steps and to ensure a clean progress of the benzyl protecting group removal by catalytic hydrogenation (Scheme 2). The direct thioglycosylation of 11 with ethanethiol in the presence of BF3∙OEt2 afforded 2-thio-ᴅ

• protecting group in derivative 14 led to alcohol 15 as the common intermediate for the synthesis of target structures 2a and 3a. The fully deprotected target compound 2a was obtained in good yield by acidic hydrolysis of the acetonide protecting group with 3 M HCl in THF followed by catalytic hydrogenation

• % and 54% yield, respectively. Moderate yields of 2-thio-ᴅ-tagatofuranosides 17 can be explained by cleavage of the benzyl protecting group [21] as well as further side reactions (Scheme 4). In order to increase the yield of 2-thio-ᴅ-tagatofuranosides 17, compound 12 was converted to the more reactive

When metal-catalyzed C–H functionalization meets visible-light photocatalysis

• Lucas Guillemard and
• Joanna Wencel-Delord

Beilstein J. Org. Chem. 2020, 16, 1754–1804, doi:10.3762/bjoc.16.147

• excellent yields. Remarkably, a high functional group tolerance was observed, including heterocyclic substrates. In contrast, the N-substitution pattern clearly impacted the efficiency of the reaction. Indeed, exchanging the N-sulfonyl or N-acetyl protecting group with other functionalities, such as

Synthesis of Streptococcus pneumoniae serotype 9V oligosaccharide antigens

• Sharavathi G. Parameswarappa,
• Claney L. Pereira and
• Peter H. Seeberger

Beilstein J. Org. Chem. 2020, 16, 1693–1699, doi:10.3762/bjoc.16.140

• reducing-end monosaccharide 14 equipped with the linker in 70% yield as a mixture of anomers (α:β = 2:1) (Scheme 2). The reductive opening of the benzylidene protecting group in 14 enabled the separation of anomers and furnished acceptor 15α [28], that was reacted with thioglucoside 11 to yield exclusively

Clickable azide-functionalized bromoarylaldehydes – synthesis and photophysical characterization

• Dominik Göbel,
• Marius Friedrich,
• Enno Lork and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2020, 16, 1683–1692, doi:10.3762/bjoc.16.139

• diphenylphosphoryl azide (DPPA) in excellent yield. Finally, the oxazoline group, which acted as directing and protecting group, was removed in a three-step sequence of N-methylation, reduction of the in situ formed iminium ion and acidic hydrolysis. This afforded the azide-functionalized para-bromobenzaldehyde 3 in

Facile synthesis of 7-alkyl-1,2,3,4-tetrahydro-1,8-naphthyridines as arginine mimetics using a Horner–Wadsworth–Emmons-based approach

• Rhys A. Lippa,
• John A. Murphy and
• Tim N. Barrett

Beilstein J. Org. Chem. 2020, 16, 1617–1626, doi:10.3762/bjoc.16.134

• cores for these compounds in high yields (63–83% over 3 steps) with no need for chromatography. Key to this transformation is the phosphoramidate protecting group, which is stable to metalation steps. Keywords: arginine; Horner–Wadsworth–Emmons; integrin; phosphoramidate; tetrahydronaphthyridine

• , exploiting the base stability of the phosphoramidate protecting group. A variety of bases were trialed at 0 °C for the initial N-phosphorylation, with 10 minutes allowed for complete deprotonation to occur (Table 1). Only minimal phosphorylation was observed when using potassium tert-butoxide (Table 1, entry

• phosphoramidate protecting group, which was superior to the more commonly applied Boc protecting group which was unstable to the lithiation. This synthetic route replaces traditional Wittig and tandem alkylation/reduction methodologies, which suffer from complications arising from troublesome byproducts and

A dynamic combinatorial library for biomimetic recognition of dipeptides in water

• Florian Klepel and
• Bart Jan Ravoo

Beilstein J. Org. Chem. 2020, 16, 1588–1595, doi:10.3762/bjoc.16.131

• conclusively to test for binding behavior and selectivity, both isomers a(CFC)2 and p(CFC)2 were synthesized using a suitable protecting group strategy (Scheme 2b). One of the Trt protection groups was replaced by an acetamidomethyl (Acm) group (CFC(Acm)), which is stable under the cleaving conditions of the

An overview on disulfide-catalyzed and -cocatalyzed photoreactions

• Yeersen Patehebieke

Beilstein J. Org. Chem. 2020, 16, 1418–1435, doi:10.3762/bjoc.16.118

• [3 + 2] methylenecyclopentane annulations of olefins with methylenecyclopropanes. This regioselective, mild, and protecting group-free annulation requires only an equimolar amount of the reacting alkene and does not require an excess of the reacting alkene, unlike other methods [9]. Furthermore, the

Oxime radicals: generation, properties and application in organic synthesis

• Igor B. Krylov,
• Stanislav A. Paveliev,
• Alexander S. Budnikov and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2020, 16, 1234–1276, doi:10.3762/bjoc.16.107

• oxazolines in good yields (products 131a–e). Aliphatic oximes also enter this transformation, including an oxime containing a TBDPS protecting group (products 131f–h). The combination of AgSCF3 and catalytic amounts of Cu(OAc)2 was used for the synthesis of trifluoromethylthiolated isoxazolines 133 from

Fluorinated phenylalanines: synthesis and pharmaceutical applications

• Laila F. Awad and
• Mohammed Salah Ayoup

Beilstein J. Org. Chem. 2020, 16, 1022–1050, doi:10.3762/bjoc.16.91

• product 2-[18F]FPhe 46 in 43% yield, whereas under microwave irradiation a 34% yield was obtained. Under the optimized conditions, the enantiomeric purity was reported to be ≥94% ee [46] (Scheme 10). 1.3. Photooxidative cyanation of fluorinated benzylamine A convenient, protecting group-free, and

• the primary hydroxy group (Alloc) gave alcohol 117 in good yield. The fluorination of 117 was achieved by treatment with DAST to form 118. Then, selective removal of the Alloc protecting group using Pd(PPh3)4, was followed by oxidation of the resulting Boc-protected amino alcohol 119 to give the N-Boc

• group for the reaction providing the desired product with 57% yield. Also, methyl and ethyl esters as C-terminal protecting groups in combination with phthalimino as the N-terminal protecting group, were both successfully explored. However, when the trifluoroacetyl amide was used as a substrate the

Copper-catalysed alkylation of heterocyclic acceptors with organometallic reagents

• Yafei Guo and
• Syuzanna R. Harutyunyan

Beilstein J. Org. Chem. 2020, 16, 1006–1021, doi:10.3762/bjoc.16.90

• lactams (Scheme 7A) [30]. They found that with a phenylcarbamate protecting group on the nitrogen atom, the addition of Et2Zn and Me3Al could be promoted by the L1/Cu catalytic system, leading to the corresponding alkylated products with 95% and 68% enantioselectivity, respectively. Furthermore, the

Synthesis of new asparagine-based glycopeptides for future scanning tunneling microscopy investigations

• Laura Sršan and
• Thomas Ziegler

Beilstein J. Org. Chem. 2020, 16, 888–894, doi:10.3762/bjoc.16.80

• -linked structures are N-acetylglycosylamines, glucose, galactose, mannose, cellobiose, lactose, and maltose [19]. Therefore, we intended to prepare glycopeptide structures containing these sugars in a stepwise way, up to tripeptides. An orthogonal Fmoc/t-Bu protecting group strategy was chosen along with

• is well known that Fmoc-protected tryptophane can lead to unwanted side products when the NH group in the indole ring remains unprotected, we decided to refrain from additional protection of the indole moiety because the removal of that protecting group would have reduced the overall yield in the end

Photocatalytic deaminative benzylation and alkylation of tetrahydroisoquinolines with N-alkylpyrydinium salts

• David Schönbauer,
• Carlo Sambiagio,
• Timothy Noël and
• Michael Schnürch

Beilstein J. Org. Chem. 2020, 16, 809–817, doi:10.3762/bjoc.16.74

• allyl pyridinium salts. The introduction of secondary alkyl chains was also proved possible. Additionally, the crucial removal of a PMP protecting group to furnish unprotected THIQ was demonstrated, which enables this method to be used for the synthesis of natural products and bioactive substances

• the PMP protecting group. Alkylation of N-phenyl-THIQ derivatives. Conditions: a2 mol % [Ir(dtbbpy)(ppy)2]PF6, DMA, 60 h; b2 mol % [Ir(dtbbpy)(ppy)2]PF6, DMA, 48 h; c2 mol % [Ru(bpy)3]Cl2, DMA/ACN 1:1, 6 h; d2 mol % [Ru(bpy)3]Cl2, DMA/ACN 1:1, 3 h. Proposed mechanism. Selected optimization of the

Efficient synthesis of dipeptide analogues of α-fluorinated β-aminophosphonates

• Marcin Kaźmierczak and
• Henryk Koroniak

Beilstein J. Org. Chem. 2020, 16, 756–762, doi:10.3762/bjoc.16.69

• , as well as J-couplings) a relative configuration of N,N-dibenzyl-protected α-fluoro-β-aminophosphonates 11 was established as (1R,2S), but we failed to crystallize these compounds [31]. That is why the removal of the benzyl protecting group from fluorides 11 and the transfer of the free amines 13

• into the salts 14 was applied. The salts 14 could be then crystallized and subjected to X-ray studies. A standard N−debenzylation protocol was employed to remove the benzyl protecting group. The hydrogenolysis reaction was catalyzed by palladium on carbon (Pd/C), and was carried out in trifluoroethanol

Recent advances in Cu-catalyzed C(sp³)–Si and C(sp³)–B bond formation

• Balaram S. Takale,
• Ruchita R. Thakore,
• Elham Etemadi-Davan and
• Bruce H. Lipshutz

Beilstein J. Org. Chem. 2020, 16, 691–737, doi:10.3762/bjoc.16.67

• aldimines 62, failing to use unactivated educts [40]. Likewise, the α-silylated sulfonamide 67 was obtained in modest ee, although the chemical yield of the transformation was very low (15%). Changing the protecting group from Ts to methyl (68) or Boc (70) in the aldimine series did not alter yields or ees

Synthesis of disparlure and monachalure enantiomers from 2,3-butanediacetals

• Adam Drop,
• Hubert Wojtasek and
• Bożena Frąckowiak-Wojtasek

Beilstein J. Org. Chem. 2020, 16, 616–620, doi:10.3762/bjoc.16.57

• the pheromone structures was attached giving compound 20 in 74% yield. Next, removal of the protecting group from the secondary alcohol followed by a Swern oxidation gave aldehyde 21 which was subjected to Wittig reactions with either of the two different alkyl derivatives and catalytic hydrogenation

Architecture and synthesis of P,N-heterocyclic phosphine ligands

• Wisdom A. Munzeiwa,
• Bernard Omondi and
• Vincent O. Nyamori

Beilstein J. Org. Chem. 2020, 16, 362–383, doi:10.3762/bjoc.16.35

• them are easily oxidized, hence the reactions are often conducted under inert conditions. Alternatively, the phosphine can be protected as a borane adduct and thereafter, the protecting group is ultimately removed to liberate the free ligand. This method has been developed by Imamoto et al. [51][52

Rapid, two-pot procedure for the synthesis of dihydropyridinones; total synthesis of aza-goniothalamin

• Thomas J. Cogswell,
• Craig S. Donald and
• Rodolfo Marquez

Beilstein J. Org. Chem. 2020, 16, 135–139, doi:10.3762/bjoc.16.15

• Zealand 10.3762/bjoc.16.15 Abstract A fast, protecting-group-free synthesis of dihydropyridinones has been developed. Starting from commercially available aldehydes, a novel one-pot amidoallylation gave access to diene compounds in good yields. Ring-closing metathesis conditions were then employed to

• produce the target dihydropyridinones efficiently and in high yields. Keywords: amidoallylation; aza-goniothalamin; dihydropyridinones; protecting-group-free; ring-closing metathesis; two-pot procedure; Introduction Six-membered nitrogen heterocycles are prevalent in many naturally occurring and

• conditions [27][28]. Ring-closing metathesis of diene 10 then proceeded in good yield (68%) to complete a fast and efficient, protecting-group-free, two-pot procedure for the racemic synthesis of aza-goniothalamin 1. Conclusion In summary, a two-pot, protecting-group-free procedure for the synthesis of

Photocontrolled DNA minor groove interactions of imidazole/pyrrole polyamides

• Sabrina Müller,
• Jannik Paulus,
• Jochen Mattay,
• Heiko Ihmels,
• Veronica I. Dodero and
• Norbert Sewald

Beilstein J. Org. Chem. 2020, 16, 60–70, doi:10.3762/bjoc.16.8

• experiments. The assembly of the photoswitchable pyrrole/imidazole polyamides (P1–P3) was performed stepwise on solid phase using the acid-labile 2-chlorotrityl resin and Fmoc as a temporary protecting group, according to the synthetic route published by the Dervan group [40]. The synthesis of the Fmoc

Starazo triple switches – synthesis of unsymmetrical 1,3,5-tris(arylazo)benzenes

• Andreas H. Heindl and
• Hermann A. Wegner

Beilstein J. Org. Chem. 2020, 16, 22–31, doi:10.3762/bjoc.16.4

• evaluated for the preparation of tris(arylazo)benzenes 3. The first one relied on the consecutive condensation of anilines with nitroso compounds, Baeyer–Mills reactions [13]. With a suitable protecting group strategy, the selective construction of the individual AB branches should be achievable (Scheme 1

SnCl₄-catalyzed solvent-free acetolysis of 2,7-anhydrosialic acid derivatives

• Kesatebrhan Haile Asressu and
• Cheng-Chung Wang

Beilstein J. Org. Chem. 2019, 15, 2990–2999, doi:10.3762/bjoc.15.295

• in the presence of acetic anhydride. Among the various Lewis acids tested, the desired acetolysis products were obtained in moderate yields under tin(IV) chloride catalysis. Our methodology could be extended to regioselective protecting group installations and manipulations towards a number of

• highly electron-donating benzyl groups. The low yield of 26 occurred because the more reactive primary benzyl group of 25 was cleaved [40] and replaced with an acetyl protecting group, resulting in 27 in 52% yield. Cleavage of the intramolecular glycosidic bond in 5, 21, and 25 was confirmed by NMR

Regioselectivity of glycosylation reactions of galactose acceptors: an experimental and theoretical study

• Enrique A. Del Vigo,
• Carlos A. Stortz and
• Carla Marino

Beilstein J. Org. Chem. 2019, 15, 2982–2989, doi:10.3762/bjoc.15.294

• was avoided, both in the donors and acceptors, to preclude migration during the glycosylation reactions [14][15]. Synthesis of the glycosyl acceptors The glycosyl acceptors 1α/β and 2α/β were prepared employing protecting group chemistry while trying to simplify the reaction sequences and to optimize

Automated glycan assembly of arabinomannan oligosaccharides from Mycobacterium tuberculosis

• Alonso Pardo-Vargas,
• Priya Bharate,
• Martina Delbianco and
• Peter H. Seeberger

Beilstein J. Org. Chem. 2019, 15, 2936–2940, doi:10.3762/bjoc.15.288

• (from −40 to −20 °C). Finally, the deprotection module removed the temporary protecting group, such as fluorenylmethyloxycarbonyl (Fmoc) or levulinoyl (Lev), to reveal a free hydroxy group that allowed for further chain elongation in the next cycle. Fmoc and Lev were used as orthogonal temporary

Chemical synthesis of tripeptide thioesters for the biotechnological incorporation into the myxobacterial secondary metabolite argyrin via mutasynthesis

• David C. B. Siebert,
• Roman Sommer,
• Domen Pogorevc,
• Michael Hoffmann,
• Silke C. Wenzel,
• Rolf Müller and
• Alexander Titz

Beilstein J. Org. Chem. 2019, 15, 2922–2929, doi:10.3762/bjoc.15.286

• benzyl protected serine at the Dha site. Following hydrogenolytic deprotection, in situ produced serine EDC adduct was subjected to copper(I) chloride-mediated elimination to give the dehydroalanine derivatives 34a and 34b in good yields. Deprotection of the ester protecting group also proceeded in good

• , acid-mediated deprotection of the Boc group and final coupling to Boc-ᴅ-alanine. Fully protected tripeptides were transformed by base hydrolysis into the free carboxylic acids, followed by activation of the unprotected C-terminus as a SNAc thioester. Subsequent cleavage of the N-terminal Boc protecting

• group gave the unnatural analogs containing ᴅ- or ʟ-alanine at the dehydroalanine site and sarcosine or glycine at the C-terminus (9–12) in generally acceptable yields. The synthesis of the dehydroalanine containing analogs 13 and 14 was performed following the same strategy with incorporation of a

Bacterial terpene biosynthesis: challenges and opportunities for pathway engineering

• Eric J. N. Helfrich,
• Geng-Min Lin,
• Christopher A. Voigt and
• Jon Clardy

Beilstein J. Org. Chem. 2019, 15, 2889–2906, doi:10.3762/bjoc.15.283

• ]. This way, pre-existing oxidized functionalities need to be maintained and propagated with complex protecting group strategies en route to the desired target [100]. Most importantly, however, these total syntheses can easily require 50 or more steps, with poor overall yields, and are hence far away from