Homo- and hetero-difunctionalized β-cyclodextrins: Short direct synthesis in gram scale and analysis of regiochemistry

• Gábor Benkovics,
• Mihály Bálint,
• Éva Fenyvesi,
• Erzsébet Varga,
• Szabolcs Béni,
• Konstantina Yannakopoulou and
• Milo Malanga

Beilstein J. Org. Chem. 2019, 15, 710–720, doi:10.3762/bjoc.15.66

• the homo-disubstituted derivatives, e.g., 6A,6X-diazido-β-CDs can be prepared using sodium azide in N,N-dimethylformamide (DMF) and moderate heating (Scheme 1). Although capping reagents are selective in disubstitution and this methodology revolutionized CD difunctionalization, their application has

• pseudoenantiomers. The first two reactions were based on step-wise substitution of the primary rim with different reactants, while in the third type the pure regioisomers of 6A,6X-ditosylated β-CDs were used as starting materials and sodium azide was the limiting reagent. In this latter case, single regioisomers of

• identification, the authentic diazido compounds with known regiochemistry were synthesized using the appropriately spaced disulfonate capping agent, followed by azide opening of the cap and by chromatographic purification of the diazidated fractions [11][12] (reference reactions 1–3, Scheme 1). Direct

Polyaminoazide mixtures for the synthesis of pH-responsive calixarene nanosponges

• Antonella Di Vincenzo,
• Antonio Palumbo Piccionello,
• Alberto Spinella,
• Delia Chillura Martino,
• Marco Russo and
• Paolo Lo Meo

Beilstein J. Org. Chem. 2019, 15, 633–641, doi:10.3762/bjoc.15.59

• with CyCaNSs. This fact was explained assuming that a diazidoalkane is a less effective reticulating agent than a heptakisazido-β-cyclodextrin, simply because of the lesser number of reactive azide groups present. Hence, we reasoned that the polymer network formation process could have been improved by

• 3-azido-1-bromopropane (3, Scheme 2) The bromoazide 3, in turn, can be obtained by reacting 1,3-dibromopropane (4) with one equivalent of sodium azide. However, even if the reaction is performed under stoichiometric conditions, it has been found that the desired product cannot be recovered (by

• Supporting Information File 1, Scheme S1. All the signals present in the spectra of mixture II can be easily explained by a suitable combination of the same aforementioned elementary processes. Up to 40 different products can be identified in detectable amounts, containing up to eight azide groups, which are

Cyclopropene derivatives of aminosugars for metabolic glycoengineering

• Jessica Hassenrück and
• Valentin Wittmann

Beilstein J. Org. Chem. 2019, 15, 584–601, doi:10.3762/bjoc.15.54

• , azides and alkynes can be visualized by the Staudinger ligation [8] or the azide–alkyne cycloaddition, that can be performed either copper-catalyzed [9][10] or strain-promoted [11][12]. Another type of reporter group that has been proven to be a valuable tool are electron-rich or strained alkenes, that

Low-budget 3D-printed equipment for continuous flow reactions

• Jochen M. Neumaier,
• Amiera Madani,
• Thomas Klein and
• Thomas Ziegler

Beilstein J. Org. Chem. 2019, 15, 558–566, doi:10.3762/bjoc.15.50

• pentaacetyl glucose (1) with trimethylsilyl azide in the presence of SnCl4 directly into azide 8 (Scheme 5) as was previously described for the classical batch preparation [39]. At a resident time of 7 minutes an 80% yield of azide 8 could be achieved. Conclusion In conclusion, we have demonstrated that low

• . Synthesis of azide-functionalized glycopyranoside 8. Reaction conditions for the two-step glycosylation. Supporting Information Supporting Information File 203: All details for the 3D-printed lab equipment and reactors (full part list, exploded-view CAD drawings, Arduino wiring) and all experimental data

Selectivity in multiple multicomponent reactions: types and synthetic applications

• Ouldouz Ghashghaei,
• Francesca Seghetti and
• Rodolfo Lavilla

Beilstein J. Org. Chem. 2019, 15, 521–534, doi:10.3762/bjoc.15.46

• connected through long linear alkyl chains. Representative examples include polymerizations using Biginelli [12], Passerini [13], Ugi [14], metal-catalyzed MCRs [15], and reactive combinations involving an alkyne-sulfonyl azide nucleophile [16] and sulfur, amines and isocyanides [17] (Scheme 3). An

• Biginelli/Ugi-azide sequential reactions were reported by Shahrisa [29]. Similarly, Sharma and co-workers disclosed a related approach [30]. Moreover, 2,4-diaminopyrimidine underwent selective GBB processes leading to a single monoadduct, which reacted again with another isocyanide/aldehyde pair to yield a

• involving terephthalaldehyde; C) Multiple GBB processes with diaminodiazines. Biased substrates for selective MMCRs. The Union concept. A) Asinger–Ugi combination; B) Passerini–Ugi/azide from anthranilic acid; C) Passerini–Ugi multiple MCR from glutamic acid. Relevant examples of consecutive MCRs exploiting

A chemoenzymatic synthesis of ceramide trafficking inhibitor HPA-12

• Seema V. Kanojia,
• Sucheta Chatterjee,
• Subrata Chattopadhyay and
• Dibakar Goswami

Beilstein J. Org. Chem. 2019, 15, 490–496, doi:10.3762/bjoc.15.42

• , the primary hydroxy function of 7a was benzoylated to get 8. Compound 8 was mesylated with methanesulfonyl chloride (MsCl)/Et3N and the product reacted with NaN3/DMF at 90 °C to obtain the azide 9 (Scheme 2). We first attempted to convert 9 to the target compound 2 by i) converting the azide group to

•  3). Hence, we decided to debenzylate compound 9 prior to its reduction to the amine and subsequent acylation. Towards this (Scheme 4), oxidative debenzylation of 9 using DDQ yielded 10 in 84% yield. Treatment of 10 with LiAlH4 led to the reduction of the azide group to amine along with

• -nitrobenzoic acid/THF; (v) KOH/EtOH/25 °C/8 h. Synthesis of azide 9 from (S)-4. Conditions: (i) NaH/Bu4NI/BnBr/THF/25 °C/4 h; (ii) AD-mix-β/t-BuOH–H2O 1:1/0 °C/72 h; (iii) DDQ/CH2Cl2–H2O 4:1/3 h; (iv) Et3N/BzCN/0 °C/CH2Cl2/2 h; (v) a) MsCl/Et3N/CH2Cl2/0 °C/2.5 h, b) NaN3/DMF/90 °C/3 h. Attempted synthesis of 2

Synthesis and fluorescent properties of N(9)-alkylated 2-amino-6-triazolylpurines and 7-deazapurines

• Andrejs Šišuļins,
• Jonas Bucevičius,
• Yu-Ting Tseng,
• Irina Novosjolova,
• Kaspars Traskovskis,
• Ērika Bizdēna,
• Huan-Tsung Chang,
• Sigitas Tumkevičius and
• Māris Turks

Beilstein J. Org. Chem. 2019, 15, 474–489, doi:10.3762/bjoc.15.41

• synthesis of a novel library of 9-alkyl-2-amino-6-triazolylpurine derivatives. Thus, copper-catalyzed azide–alkyne 1,3-dipolar cycloaddition reaction of compounds 6a–c with different para-substituted phenylacetylenes produced the expected compounds 7a–f, 8a–f and 9 (Scheme 1). The yields of 1,3-dipolar

• derivative 4 was synthesized using previously reported procedure of Cu(I)-catalyzed azide–alkyne cycloaddition reaction on 2,6-diazidopurine derivatives [25]. Synthesis of 7-deazapurine derivatives 3, 10a, 11a and their characterization are described in our preliminary communication [39]. Synthesis of 9

• , 453.2478; found, 453.2477. Synthesis of 2-dialkylamino-9-methyl-6-[4-(4-substituted phenyl)-1,2,3-triazol-1-yl]-7-deazapurines 10a–f, 11a–f (Analogous as described in [39], a typical procedure): A mixture of azide 3 (86 mg, 0.4 mmol) and secondary amine (1.2 mmol) in CH3CN (2 mL) was protected from

Oxidative radical ring-opening/cyclization of cyclopropane derivatives

• Yu Liu,
• Qiao-Lin Wang,
• Zan Chen,
• Cong-Shan Zhou,
• Bi-Quan Xiong,
• Pan-Liang Zhang,
• Chang-An Yang and
• Quan Zhou

Beilstein J. Org. Chem. 2019, 15, 256–278, doi:10.3762/bjoc.15.23

• of azide to Rh2(esp)2 complex (bis[rhodium-(α,α,α’,α’-tetramethyl-1,3-benzenedipropionic acid)]) and extrusion of N2. Then, the Rh-nitrene intermediate 65 goes through an intramolecular single electron transfer (SET) to give the nitrogen-centered radical intermediate 66 [87][88][89][90]. Next, the

Thermophilic phosphoribosyltransferases Thermus thermophilus HB27 in nucleotide synthesis

• Ilja V. Fateev,
• Ekaterina V. Sinitsina,
• Aiguzel U. Bikanasova,
• Maria A. Kostromina,
• Elena S. Tuzova,
• Larisa V. Esipova,
• Tatiana I. Muravyova,
• Alexei L. Kayushin,
• Irina D. Konstantinova and
• Roman S. Esipov

Beilstein J. Org. Chem. 2018, 14, 3098–3105, doi:10.3762/bjoc.14.289

• , bacto tryptone, and bacto agar were purchased from Becton Dickinson Biosciences (USA, NJ). NaOH and HCl were purchased from Merck (USA, MA). Sodium persulfate, TEMED, ethidium bromide, and sodium azide were purchased from Helicon (Russia). dNTP was purchased from Thermo Fisher Scientific (USA, MA). DTT

Copper(I)-catalyzed tandem reaction: synthesis of 1,4-disubstituted 1,2,3-triazoles from alkyl diacyl peroxides, azidotrimethylsilane, and alkynes

• Muhammad Israr,
• Changqing Ye,
• Munira Taj Muhammad,
• Yajun Li and
• Hongli Bao

Beilstein J. Org. Chem. 2018, 14, 2916–2922, doi:10.3762/bjoc.14.270

• Academy of Sciences, 155 Yangqiao Road West, Fuzhou, Fujian 350002, P. R. China University of Chinese academy of Science (UCAS), Beijing 100190, P. R. China 10.3762/bjoc.14.270 Abstract A copper-catalyzed azide–alkyne cycloaddition (CuAAC) reaction for the synthesis of 1,4-disubstituted 1,2,3-triazoles

• from alkyl diacyl peroxides, azidotrimethylsilane, and terminal alkynes is reported. The alkyl carboxylic acids is for the first time being used as the alkyl azide precursors in the form of alkyl diacyl peroxides. This method avoids the necessity to handle organic azides, as they are generated in situ

• research and synthesis of functionalized compounds that have applications in medicinal chemistry, drug discovery, materials chemistry, and as well as in bioconjugates [2][3][4][5][6][7][8][9][10][11][12]. The copper-catalyzed azide–alkyne cycloaddition (CuAAC) reaction [13][14][15][16][17][18][19][20][21

Unnatural α-amino ethyl esters from diethyl malonate or ethyl β-bromo-α-hydroxyiminocarboxylate

• Eloi P. Coutant,
• Vincent Hervin,
• Glwadys Gagnot,
• Candice Ford,
• Racha Baatallah and
• Yves L. Janin

Beilstein J. Org. Chem. 2018, 14, 2853–2860, doi:10.3762/bjoc.14.264

• of 53. As reported [30], alkylation of diethyl malonate (4) with 2-(bromomethyl)-1,3-dioxolane (50) gave the diester 51. A controlled saponification led to the mono acid 52 and its reaction with diphenylphosphoryl azide [31][32][33] gave 16% of the target aminoester 53 upon treatment with

Synthesis of pyrrolidine-based hamamelitannin analogues as quorum sensing inhibitors in Staphylococcus aureus

• Jakob Bouton,
• Kristof Van Hecke,
• Reuven Rasooly and
• Serge Van Calenbergh

Beilstein J. Org. Chem. 2018, 14, 2822–2828, doi:10.3762/bjoc.14.260

• only in an elimination product. This led us to replace the electron-withdrawing nosyl protecting group with a Boc group. After removal of the TBS ether and mesylation of the resulting alcohol, substitution with NaN3 now smoothly provided azide 29. The azide was then reduced under classical Staudinger

Assembly of fully substituted triazolochromenes via a novel multicomponent reaction or mechanochemical synthesis

• Robby Vroemans,
• Yenthel Verhaegen,
• My Tran Thi Dieu and
• Wim Dehaen

Beilstein J. Org. Chem. 2018, 14, 2689–2697, doi:10.3762/bjoc.14.246

• triazolochromenes were found to be active as antitubercular agents [32], indicating that the development of new triazolochromenes in a straightforward manner is still of major interest. Previously, NH-triazolochromenes were synthesized starting from 3-nitrochromenes with sodium azide [16][17][18][19][20][21][22

• cycloaddition reaction on the synthesis of NH-triazoles by Guan et al. using p-toluenesulfonic acid as the catalyst in DMF [19], but with benzyl azide (4a) instead of sodium azide (Scheme 1). Our initial test gave a promising result, since after a reaction time of five days for the cycloaddition step the

• reaction was further optimized using salicylaldehyde (1a), β-nitrostyrene (2a) and benzyl azide (3a) as model substrates (see Supporting Information File 1, pages S4–S8 for full description of the optimization study). The optimized conditions for the one-pot three-component reaction were determined to be 1

Non-native autoinducer analogs capable of modulating the SdiA quorum sensing receptor in Salmonella enterica serovar Typhimurium

• Matthew J. Styles and
• Helen E. Blackwell

Beilstein J. Org. Chem. 2018, 14, 2651–2664, doi:10.3762/bjoc.14.243

• binds competitively to the SdiA ligand-binding site, we examined the structurally homologous, yet unreactive azide analog of 11, Az-11 (structure shown in Figure 3), in the S. Typhimurium SdiA reporter. Az-11 was found to fully agonize SdiA with an EC50 of 125 nM (Table 1), in contrast to the full

Targeting the Pseudomonas quinolone signal quorum sensing system for the discovery of novel anti-infective pathoblockers

• Christian Schütz and
• Martin Empting

Beilstein J. Org. Chem. 2018, 14, 2627–2645, doi:10.3762/bjoc.14.241

• , a novel competition assay employing ‘clickable’ active-site-labelling probes was developed. These compounds contain terminal alkyne moieties, which can be exploited for straightforward decoration via copper(I)-catalyzed alkyne–azide cycloaddition (CuAAC), the prototypic click reaction. This

Nucleoside macrocycles formed by intramolecular click reaction: efficient cyclization of pyrimidine nucleosides decorated with 5'-azido residues and 5-octadiynyl side chains

• Jiang Liu,
• Peter Leonard,
• Sebastian L. Müller,
• Constantin Daniliuc and
• Frank Seela

Beilstein J. Org. Chem. 2018, 14, 2404–2410, doi:10.3762/bjoc.14.217

• and deprotection steps are necessary to control the cyclization process. Preorganization of the molecules can help to make cyclization more efficient. Azide–alkyne "click" chemistry has been executed to generate cyclic peptides [11][12][13], cyclic oligonucleotides [14][15][16][17] and other

• cyclic molecules when alkynyl side chains are functionalizing nucleobases in 5-position and azido substituents replace sugar 5'-hydroxy groups. Cyclic molecules (Figure 1) should be accessible when a copper(I)-azide–alkyne cycloaddition [29][30][31] is performed. The resulting "nucleoides" represent a

• ’-azido-2’,5’-dideoxycytidine 2. Earlier, the nucleoside precursor 1 was used for DNA cross-linking and labelling [36]. The unprotected nucleoside 1 was treated with equimolar amounts of carbon tetrabromide and triphenylphosphine and a five-fold excess of sodium azide to obtain the azide derivative 2 (37

Catalyst-free synthesis of 4-acyl-NH-1,2,3-triazoles by water-mediated cycloaddition reactions of enaminones and tosyl azide

• Lu Yang,
• Yuwei Wu,
• Yiming Yang,
• Chengping Wen and
• Jie-Ping Wan

Beilstein J. Org. Chem. 2018, 14, 2348–2353, doi:10.3762/bjoc.14.210

• synthesis of 4-acyl-NH-1,2,3-triazoles has been accomplished with high efficiency through the cycloaddition reactions between N,N-dimethylenaminones and tosyl azide. This method is featured with extraordinary sustainability by employing water as the sole medium, free of any catalyst or additive

• ][30][31][32], for example, has served enormously to the advances in both the preparation and application of 1,2,3-triazoles. In addition, the discovery of other metal-catalyzed alkyne–azide cycloadditions (MAAC) providing 1,2,3-triazoles with diverse substitution patterns triggers the continuous

• ][42][43][44]. In addition, the azide-free annulation has evolved also as another sustainable strategy for the synthesis of many 1,2,3-triazoles in the past decade [45][46][47][48][49][50]. More notably, besides occurring as active intermediate in the enamine-mediated cycloaddition for 1,2,3-triazole

Cobalt bis(acetylacetonate)–tert-butyl hydroperoxide–triethylsilane: a general reagent combination for the Markovnikov-selective hydrofunctionalization of alkenes by hydrogen atom transfer

• Xiaoshen Ma and
• Seth B. Herzon

Beilstein J. Org. Chem. 2018, 14, 2259–2265, doi:10.3762/bjoc.14.201

• ] to afford the corresponding products 4g and 4h in 96% and 89% yields, respectively. Carreira and co-workers reported the hydroazidation of alkenes using cobalt–salen complexes as hydrogen atom transfer agents and para-toluenesulfonyl azide as an azide source [16][48][55]. After careful optimization

• of the azidation reagent (p-acetamidobenzenesulfonyl azide (p-ABSA)) and additive equivalents (see Supporting Information File 1, Table S1, entries 19–28), the tertiary alkyl azide 4i was obtained in 79% yield (Table 1, entry 9). To broaden the scope of C–N coupling process via HAT, we investigated

Tetrathiafulvalene – a redox-switchable building block to control motion in mechanically interlocked molecules

• Hendrik V. Schröder and
• Christoph A. Schalley

Beilstein J. Org. Chem. 2018, 14, 2163–2185, doi:10.3762/bjoc.14.190

• (6) ring threaded onto a water-soluble axle [80]. The rotaxane was synthesized in 23% yield by a template/capping strategy where one stopper is attached using copper-catalyzed azide–alkyne click chemistry after the formation of the precursor pseudorotaxane. Due to the hydrophobic effect, the neutral

• = 6,300 M−1) which is embedded in an axle molecule with two azide residues. The second station, the dihydroxynaphthalene moiety (green), displays a lower association constant of Ka = 5,800 M−1. The pseudorotaxane precursor was end-capped by a double copper-catalyzed azide–alkyne click reaction in CH2Cl2

Hypervalent iodine compounds for anti-Markovnikov-type iodo-oxyimidation of vinylarenes

• Igor B. Krylov,
• Stanislav A. Paveliev,
• Mikhail A. Syroeshkin,
• Alexander A. Korlyukov,
• Pavel V. Dorovatovskii,
• Yan V. Zubavichus,
• Gennady I. Nikishin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2018, 14, 2146–2155, doi:10.3762/bjoc.14.188

• %) without column chromatography (Scheme 4). The synthetic utility of the obtained products 3aa and 3ab was demonstrated by the substitution of the iodine atom with O- (methanol), S- (benzenesulfinate) and N- (azide) nucleophiles (Scheme 5). It is noteworthy that the reaction of compound 3aa with sodium

Revisiting ring-degenerate rearrangements of 1-substituted-4-imino-1,2,3-triazoles

• James T. Fletcher,
• Matthew D. Hanson,
• Joseph A. Christensen and
• Eric M. Villa

Beilstein J. Org. Chem. 2018, 14, 2098–2105, doi:10.3762/bjoc.14.184

• recent years [1][2][3][4][5][6][7], enabled by efficient preparation from the Sharpless–Meldal copper-catalyzed azide–alkyne cycloaddition (CuAAC) reaction [8][9][10][11]. Click chelators with a variety of N-donor units connected at the 4-triazolyl position have been reported, including pyridine [12][13

A switchable [2]rotaxane with two active alkenyl groups

• Xiu-Li Zheng,
• Rong-Rong Tao,
• Rui-Rui Gu,
• Wen-Zhi Wang and
• Da-Hui Qu

Beilstein J. Org. Chem. 2018, 14, 2074–2081, doi:10.3762/bjoc.14.181

• alcohol with saturated NH4PF6 solution to obtain compound 5. For another key intermediate 8, containing an amide site for stabilizing the DB24C8 macrocycle, a 1,2,3-tris(dodecyloxy) benzene group as a stopper and an azide group which is used for the reaction with other moieties, was prepared through the

• +) containing intermediate compound 5 were assembled in dichloromethane through host–guest interaction and capped with compound 8 under Cu(I)-catalyzed azide–alkyne cycloaddition to get the final [2]rotaxane with two distinguishable recognition sites. The target [2]rotaxane R1 was then characterized by 1H NMR

• ppm. This new peak corresponds to H6 coming from the alkynyl–azide cycloaddition. Meanwhile, the signal of H12 and H13 split into two signals and underwent downfield shifts (ΔδH12 = 0.73 ppm and ΔδH13 = 0.87 ppm) while those of H11 and H10 moved upfield (ΔδH11 = −0.08 ppm and ΔδH10 = −0.20 ppm

Synthesis of new p-tert-butylcalix[4]arene-based polyammonium triazolyl amphiphiles and their binding with nucleoside phosphates

• Vladimir A. Burilov,
• Guzaliya A. Fatikhova,
• Mariya N. Dokuchaeva,
• Ramil I. Nugmanov,
• Diana A. Mironova,
• Pavel V. Dorovatovskii,
• Victor N. Khrustalev,
• Svetlana E. Solovieva and
• Igor S. Antipin

Beilstein J. Org. Chem. 2018, 14, 1980–1993, doi:10.3762/bjoc.14.173

• /bjoc.14.173 Abstract The synthesis of new calix[4]arenes adopting a cone stereoisomeric form bearing two or four azide fragments on the upper rim and water-soluble triazolyl amphiphilic receptors with two or four polyammonium headgroups via copper-catalyzed azide–alkyne cycloaddition reaction has been

• solutions. Results and Discussion Synthesis of polyammonium calix[4]arene derivatives The functionalization of calix[4]arenes with azide groups paves the way to introduce a wide variety of functional groups [27] on the upper rim of the macrocycle by, e.g., the copper-catalyzed azide–alkyne cycloaddition

• highly explosive [29]. Usually azide groups are installed in the upper rim of the macrocycle by a chloromethylation reaction and subsequent nucleophilic substitution by azide anions [30][31] forming rather flexible azidomethyl fragments. In this investigation more rigid arylazide calixarene derivatives

Artificial bioconjugates with naturally occurring linkages: the use of phosphodiester

• Takao Shoji,
• Hiroki Fukutomi,
• Yohei Okada and
• Kazuhiro Chiba

Beilstein J. Org. Chem. 2018, 14, 1946–1955, doi:10.3762/bjoc.14.169

• , Koganei, Tokyo 184-8588, Japan 10.3762/bjoc.14.169 Abstract Artificial orthogonal bond formations such as the alkyne–azide cycloaddition have enabled selective bioconjugations under mild conditions, yet naturally occurring linkages between native functional groups would be more straightforward to

• synthesis, otherwise subsequent steps are complicated. Synthetic chemists, armed with various elegant artificial orthogonal bond formations, including alkyne–azide cycloaddition [27][28][29][30][31][32][33][34], thiol–ene ligation [35][36][37][38], Staudinger ligation [39][40], inverse-electron-demand Diels

An amphiphilic pseudo[1]catenane: neutral guest-induced clouding point change

• Tomoki Ogoshi,
• Tomohiro Akutsu and
• Tada-aki Yamagishi

Beilstein J. Org. Chem. 2018, 14, 1937–1943, doi:10.3762/bjoc.14.167

• -responsive LCST changes are very rare, while there have been some examples of LCST control using ionic chemical stimuli [5][6]. Results and Discussion Supramolecular structure and clouding point of bicyclic compound 3 The bicyclic compound 3 was prepared using a copper(I)-catalyzed alkyne–azide cycloaddition