A new analog of dihydroxybenzoic acid from Saccharopolyspora sp. KR21-0001

• Rattiya Janthanom,
• Yuta Kikuchi,
• Hiroki Kanto,
• Tomoyasu Hirose,
• Arisu Tahara,
• Takahiro Ishii,
• Arinthip Thamchaipenet and
• Yuki Inahashi

Beilstein J. Org. Chem. 2024, 20, 497–503, doi:10.3762/bjoc.20.44

• pursuit are equally significant. One of the efficient approaches for finding new secondary metabolites from microorganisms is physicochemical (PC) screening. This approach involves the screening of the physicochemical properties of potential compounds, such as UV spectroscopy, mass spectrometry, and color

• ppm) in the 13C NMR spectra. Infrared (IR) spectroscopy was carried out using an FT-4600 Fourier transform infrared spectrometer (JASCO P-2200 Polarimeter, Japan). The UV spectra were measured using a SpectraMax QuickDrop micro-volume spectrophotometer (Molecular Devices, LLC., San Jose, USA) at

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• gave no noticeable conversion on analysis by 19F NMR spectroscopy, and a large excess of fluorine led to formation of a dark brown tar from which no useful product could be isolated. On the bases of these failed attempts, coupled with our previous experiences with the DBM scaffold [16][17][36], we used

• product 3a so we next sought to optimize this process at a preparative scale by varying the reaction stoichiometry. We found that 2.3 equiv of fluorine and 1.1 equiv of quinuclidine gave 99% conversion of 1a with 2a and 3a being the only products observed by 19F NMR spectroscopy in a 16:120 ratio (see

• % isolated yield (Scheme 2) and the structure was confirmed by NMR spectroscopy and X-ray crystallography (Figure 1). To expand the substrate scope of this difluorination method, a range of DBM derivatives 1b–n was synthesized from para-substituted acetophenones, para-substituted benzoyl chlorides and

(E,Z)-1,1,1,4,4,4-Hexafluorobut-2-enes: hydrofluoroolefins halogenation/dehydrohalogenation cascade to reach new fluorinated allene

• Nataliia V. Kirij,
• Andrey A. Filatov,
• Yurii L. Yagupolskii,
• Sheng Peng and
• Lee Sprague

Beilstein J. Org. Chem. 2024, 20, 452–459, doi:10.3762/bjoc.20.40

• of allene resulted in the formation of (Z)-1,2-dibromo-1,1,4,4,4-pentafluorobut-2-ene (13) in 92% yield, which was isolated as a colorless liquid and fully characterized by NMR spectroscopy (Scheme 10). The 19F NMR spectrum showed two signals with the integrated intensity ratio 3:2, a doublet for a

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• ). Importantly, electron paramagnetic resonance (EPR) spectroscopy at 25 °C supported the formation of species 107. However, NMR measurements at −40 °C showed the accumulation of BiIII complex 131, which can be prepared separately in a stoichiometric experiment. As such, two different pathways may lead to the C

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• short-term heating of the melted reactants at 220–250 °C is described, and the compounds were characterized by means of single-crystal X-ray crystallography, NMR, UV–vis, and IR spectroscopy, as well as cyclic voltammetry. The reaction with o-amino-, o-hydroxy-, and o-mercapto-substituted arylamines

• reaction products as 12H-quinoxaline[2,3-b]phenoxazines was confirmed through DFT calculations, X-ray crystallography, and NMR spectroscopy. Electronic absorption spectra (Table 2 and Figures 5–7) and electrochemical properties (Table 3) of the heteropentacyclic compounds 4a–h, 5a–c, 6a,b, and 10c revealed

• 15N NMR spectroscopy (NMR spectra of compounds 4a–h, 5a–c, 6a,b, and 10c are given in Figures S13–S43, Supporting Information File 1), mass spectrometry (Figures S44–S56, Supporting Information File 1), IR and UV–vis spectroscopy, as well as elemental analysis. The NMR spectra were recorded on the

Spatial arrangements of cyclodextrin host–guest complexes in solution studied by ¹³C NMR and molecular modelling

• Konstantin Lebedinskiy,
• Ivan Barvík,
• Zdeněk Tošner,
• Ivana Císařová,
• Jindřich Jindřich and
• Radim Hrdina

Beilstein J. Org. Chem. 2024, 20, 331–335, doi:10.3762/bjoc.20.33

• complex of 1 with α-CD. Interatomic distances within the host–guest complex were measured using rotating-frame nuclear Overhauser effect spectroscopy (ROESY) measurements. For the complex of 1 with α-CD, the cross-peak in the 2D ROESY spectrum between proton 5 of the glucose moiety of the host α-CD and

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• ) spectroscopy to derive binding constants for the interaction between CMA1 and GalNAc. A single cycle kinetics approach was applied, resulting in a measured KD of 1.66 ± 0.08 µM (Figure 3d,e). Inhibiting binding of CMA1 to the GalNAc chip through a dilution series of N-acetyllactosamine (LacNAc) via multicycle

• raised by 1 °C/min from 25 to 100 °C, and fluorescence readings were taken at each step. Surface plasmon resonance spectroscopy Experiments were performed using a Biacore X100 instrument (Cytiva) at 25 °C in HBS-T running buffer (10 mM HEPES pH 7.4, 150 mM NaCl and 0.05% Tween 20). Biotinylated PAA

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• using a high-pressure mercury lamp equipped with a sharp cut filter (λ > 380 nm), which resulted in a smooth conversion into the PBI product 6a within 20 min. Interestingly, the sulfoxide derivative exhibited enhanced kinetics, as confirmed by UV–vis spectroscopy and NMR experiments. The latter was also

• ” is particularly interesting, since the as-prepared π-extended structures can undergo in-depth structural characterization and electronic investigations in situ at the single molecule scale, thanks to scanning probe microscopy and spectroscopy. The synthetic route relying on O-extrusion was thus

Unveiling the regioselectivity of rhodium(I)-catalyzed [2 + 2 + 2] cycloaddition reactions for open-cage C₇₀ production

• Cristina Castanyer,
• Anna Pla-Quintana,
• Anna Roglans,
• Albert Artigas and
• Miquel Solà

Beilstein J. Org. Chem. 2024, 20, 272–279, doi:10.3762/bjoc.20.28

• we analyzed by UV–vis spectroscopy. This peak was assigned as a bis(fulleroid) compound by comparing the spectra with the UV–vis absorption pattern exhibited by previously characterized C70 bis(fulleroids) reported by Murata et al. [43][48]. In addition, a minor peak at a retention time of 20 minutes

• column chromatography, giving an inseparable mixture of different isomers. The oxygenation process was confirmed by HRMS, which gave a single peak at m/z = 1170.0756 corresponding to [3a + Na]+. On analyzing carefully the mixture by 1H NMR spectroscopy, we observed three different sets of three methyl

Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• in vacuo and the resulting residue was subjected to 1H NMR spectroscopy or column chromatography. A divided-cell experiment was performed using an H-type cell (4G glass filter). Compound 1 (0.2 mmol), Bu4NPF6 (387 mg, 1 mmol), phosphate base (90 mg, 0.2 mmol), CH2Cl2 (10 mL), and methyl vinyl ketone

• was removed by filtration through a short silica gel pad under reduced pressure. The filtrate was concentrated in vacuo and the resulting residue was subjected to 1H NMR spectroscopy or column chromatography. Application of amidyl radical species generated by PCET. (A) Effect of phosphate base on the

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• nitrobenzene. For example, quinoquinoline 5 reacts with chloranil upon heating in toluene to give a dark brown, high-melting product, in which, however, the methylene bridge remains unchanged. According to 1H NMR spectroscopy and combustion analysis data, this is complex 9 with a composition close to the ratio

• /data_request/cif. Supporting Information File 14: Additional experimental and XRD information, synthetic procedures, copies of NMR spectral data for new compounds. Acknowledgements We thank the Scientific and Educational Laboratory of Resonance Spectroscopy (Department of Natural and High Molecular Compounds

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• (λirr = 660 nm). The excited state dynamics of 18c was later studied in detail by Nagasawa and co-workers using femtosecond time-resolved transient absorption spectroscopy [44]. In 2022, Qiao and co-workers attempted to extend the thermal relaxation half-life of compound 18c by addition of cations such

• the Z-isomers in comparison with the E-forms [62]. In 2018, Nagasawa and co-workers provided a detailed investigation of the influence of solvent polarity and intermolecular hydrogen bonding on the photoisomerization of N,N'-diacetylindigo (9a) by transient absorption spectroscopy [63]. In principle

• -donating group, 19a) to 6.8 h (in the presence of electron-withdrawing group, 19f) depending on the effect of the substituents in the aryl groups. Further insights into the photoisomerization mechanism of N,N'-diarylindigos were provided in 2022 using steady-state and time-resolved spectroscopy experiments

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• spectroscopy and the ee values were determined by chiral HPLC. Structures of bioactive fluorinated indole derivatives. Proposed mechanism for the transfer hydrogenation reaction. Synthesis of chiral indolines via asymmetric reduction. Substrate scope of 3,3-difluoro-3H-indoles. Experiment at 2 mmol scale

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• treated with 90% aq trifluoroacetic acid in CH2Cl2 to give diol 7 (70% yield) that was formed due to migration of a chloroacetyl group from O-7 to O-9. The structure of diol 7 was established by NMR spectroscopy, high-resolution mass spectrometry and X-ray diffraction analysis (see the Experimental

• CFCl3 (δF 0.0). Assignments of the signals in the NMR spectra were performed using 2D-spectroscopy (COSY, HSQC, HMBC) and DEPT-135 experiments. For the copies of NMR spectra for all new compounds see Supporting Information File 1. High resolution mass spectra (electrospray ionization, HRESIMS) were

• cotton wool plug and concentrated under reduced pressure. The residue was dried in vacuo, dissolved in toluene (2 mL) and separated by gel permeation chromatography on a Bio-Beads S-X3 column (toluene). The first eluted fraction contained disaccharides 4, which was analyzed by NMR spectroscopy to give

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• 1H nuclear magnetic resonance (NMR) spectroscopy. Their investigation revealed that the product plays a pivotal role as an autocatalyst in the kinetics, as illustrated in Scheme 8 [104][105][106]. The traditional model posits that an alkyne (A) and TCNE (designated as B in Scheme 8) initially form a

• manner, ultimately affording 27 with 90% yield. The formation of intermediates 24, 25, and 26 was elucidated through 1H NMR analysis, of which 24 and 26 were successfully isolated and characterized. A comprehensive analysis of the [2 + 2] CA–RE reaction activation parameters via 1H NMR spectroscopy

• ) [142]. In these conjugates, the push–pull chromophores and the C60 unit were effectively spatially isolated from each other – a feat achieved through the strategic incorporation of a pyrrolidine ring as the connecting bridge. Thorough examinations via steady-state fluorescence spectroscopy in toluene

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• the amine 2b gave the corresponding amide 2g in 28% yield. The chloro-substituted derivative 2e was synthesized in a Sandmeyer-reaction from 2b in 20% yield. The products 2a–g were identified and fully characterized by NMR spectroscopy (1H, 13C, COSY, HSQC, and HMBC), elemental analyses, and mass

• because of their low water solubility. The styrylpyridine derivatives 2a–g were irradiated in oxygen-saturated solutions in MeCN, H2O, MeOH, or MeCN/H2O with a high-pressure Hg lamp (λ > 220 nm), and the course of the photocyclization reaction was monitored by absorption spectroscopy (Figure 2). In

• within the binding site. The binding mode of the benzo[c]quinolizinium derivatives 3c,e–g with DNA was further examined with circular dichroism (CD) and linear dichroism (LD) spectroscopy (Figure 6 and Supporting Information File 1, Figures S12–S14). Hence, with increasing ligand-DNA ratio (LDR) weak

Optimizing reaction conditions for the light-driven hydrogen evolution in a loop photoreactor

• Pengcheng Li,
• Daniel Kowalczyk,
• Johannes Liessem,
• Mohamed M. Elnagar,
• Dariusz Mitoraj,
• Radim Beranek and
• Dirk Ziegenbalg

Beilstein J. Org. Chem. 2024, 20, 74–91, doi:10.3762/bjoc.20.9

• photocatalyst is referred to as Pt-PCN. The surface morphology, chemical composition, and elemental distribution of the Pt-PCN were analyzed using a ZEISS LEO 1550 VP scanning electron microscope (SEM) equipped with energy dispersive spectroscopy (EDS) from Ametek, USA. The SEM was operated at an acceleration

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• expanded by pyrrolo annelation. The optical and redox properties of these compounds, in some cases carbon-rich, were studied by UV–vis absorption spectroscopy and cyclic voltammetry. Synthetically, the work explores IF diones or fluorenone as central building blocks by subjecting the carbonyl groups to a

• could potentially after deprotonation be reacted with electrophiles as previously established [29] for the parent structure [30] without tert-butyl substituents. UV–vis absorption spectroscopy UV–vis absorption spectra of the known compound 4 [14] and new compounds 9–12 and 15 are depicted in Figure 3

• degradation was investigated by UV–vis absorption spectroscopy; the absorption spectrum was measured over time for three different samples, and a notable change in the longest-wavelength absorption maximum was only observed for the sample that was exposed to both light and oxygen (see Figures S3 and S4 in

Preparing a liquid crystalline dispersion of carbon nanotubes with high aspect ratio

• Keiko Kojima,
• Nodoka Kosugi,
• Hirokuni Jintoku,
• Kazufumi Kobashi and
• Toshiya Okazaki

Beilstein J. Org. Chem. 2024, 20, 52–58, doi:10.3762/bjoc.20.7

• ) absorption measurements were carried out using a Fourier-transform infrared spectroscopy (Bruker, VERTEX 80v) and a THz time domain spectroscopy (THz-TDS) system (Otsuka Electronics, TR-1000). Preparation of the DWCNT dispersion The dispersion of DWCNTs was prepared using a two-step process in accordance

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• toward the desired product 3-(allyloxy)propanenitrile was observed after stirring the reaction mixture for 24 h at room temperature. Analyzing the reaction mixture with 1H NMR spectroscopy revealed the formation of a minor amount of a novel compound characterized by two multiplets centered at 3.31 and

• purified by recrystallization whereby the solvents used vary depending on the parent Michael acceptor (for details, see Supporting Information File 1). Yields are not optimized and given in Table 1. The synthesized zwitterions were investigated via 1H, 13C and 31P NMR spectroscopy. All synthesized

• between P1 and C15 is slightly longer (1.824(2) Å in 2a; 1.828(3) in 2f) when compared to the P–CH2 distance of a tetra-n-butylphosphonium cation [45]. UV–vis spectroscopy All phosphonium phenolate compounds exhibit a bright yellow color in solution (see inset in Figure 3). Investigating the absorption

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• mV) compared to the other derivatives in neutral water, owing to the basic imidazole groups (Table 1). The protonation behavior of the imidazole groups on (PA-Im)n·(C60)m in D2O (0.5 mM based on PA-Im) was monitored by 1H NMR spectroscopy, showing significant down-field shifts of the imidazole ring

NMRium: Teaching nuclear magnetic resonance spectra interpretation in an online platform

• Luc Patiny,
• Hamed Musallam,
• Alejandro Bolaños,
• Michaël Zasso,
• Julien Wist,
• Metin Karayilan,
• Eva Ziegler,
• Johannes C. Liermann and
• Nils E. Schlörer

Beilstein J. Org. Chem. 2024, 20, 25–31, doi:10.3762/bjoc.20.4

• ; structure elucidation; Introduction For the validation of molecular structures, nuclear magnetic resonance (NMR) spectroscopy is an indispensable methodology in the daily routine of synthetic chemistry laboratories. Arguably, NMR experiments serve as the ‘eye of the synthetic chemist’ because they allow a

• rapid and comparatively easy deduction of structural features with the only requirement being the molecule's solubility in deuterated solvents. Therefore, NMR spectroscopy is of ubiquitous presence in many disciplines today. At the same time, with the high throughput analysis of samples that has been a

• common approach in academic laboratories, the ability of chemists to conduct the interpretation of experimental results becomes crucial. In addition, NMR spectroscopy is one of the methods that has been delivering digital experimental raw data for a long time. However, the way the spectra are interpreted

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• effect on the yield of the final compounds 3 observed. The structures of compounds 3a–u were confirmed by IR, 1H and 13C NMR spectroscopy (Figures S1‒S44 in Supporting Information File 1) as well as by high-resolution mass spectrometry (HRMS). X-ray data obtained for compound 3g gave us final proof of

1-Butyl-3-methylimidazolium tetrafluoroborate as suitable solvent for BF₃: the case of alkyne hydration. Chemistry vs electrochemistry

• Marta David,
• Elisa Galli,
• Richard C. D. Brown,
• Marta Feroci,
• Fabrizio Vetica and
• Martina Bortolami

Beilstein J. Org. Chem. 2023, 19, 1966–1981, doi:10.3762/bjoc.19.147

• was analysed using NMR spectroscopy. Initially the reaction was carried out without added water, in the presence of a large excess of BF3·Et2O (5 equiv) (as often reported in literature, see as an example [104]). The reaction was conducted for 5 h at 80 °C using either “stock” (undried) BMIm-BF4

Aldiminium and 1,2,3-triazolium dithiocarboxylate zwitterions derived from cyclic (alkyl)(amino) and mesoionic carbenes

• Nedra Touj,
• François Mazars,
• Guillermo Zaragoza and
• Lionel Delaude

Beilstein J. Org. Chem. 2023, 19, 1947–1956, doi:10.3762/bjoc.19.145

• on 13C NMR spectroscopy (see below). We suspect that deleterious hydrophilic effects caused the subsequent decomposition of the CAAC·CS2 and MIC·CS2 zwitterions when an aqueous work-up was applied. Structural analysis Several analytical techniques were employed to characterize the nine aldiminium and

• observed for C2 when replacing its acidic proton with a CS2 group among all the nucleophilic carbene precursors that we have investigated so far [40][75]. Yet, we do not have an explanation for it. On IR spectroscopy, the most intense absorption in the ATR spectra of compounds 4a–c and 6a–f was always due

• lower energies is a likely consequence of the greater donicity of CAACs and MICs vs NHCs. Hence, the ν̃ CS2 values recorded on IR spectroscopy constitute a more sensitive probe than the δ CS2 values obtained from 13C NMR spectroscopy to help discriminate the various types of dithiocarboxylate adducts