Search results
Search for "peptides" in Full Text gives 373 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.
A versatile route towards 6-arylpipecolic acids
Beilstein J. Org. Chem. 2025, 21, 1104–1115, doi:10.3762/bjoc.21.88
- important role as building blocks for peptide synthesis [1][2][3][4][5], as organocatalysts [6][7][8][9][10] and as enzyme inhibitors [4][11][12][13]. The incorporation of such amino acids into peptides can, for example, influence peptide conformation, the binding affinity to receptors [14], as well as
- -inducing properties in peptides [22][23][24]. Furthermore, derivatives of pipecolic acid are known for their bioactivity as secondary metabolites [25][26][27] and for being building blocks for piperidine alkaloids [28] with a variety of uses. Results and Discussion Addressing specific positions in the ring
Dicarboxylate recognition based on ultracycle hosts through cooperative hydrogen bonding and anion–π interactions
Beilstein J. Org. Chem. 2025, 21, 884–889, doi:10.3762/bjoc.21.72
- metabolism [3][4]; cyclic peptides play critical roles in plant or bacterial defenses and as well as animal hormone signaling [5][6]; cyclic proteins exhibit diverse therapeutic functions [7]; and cyclic nucleotides are essential for molecular cloning and hold potential for disease treatment [8]. In contrast
Substituent effects in N-acetylated phenylazopyrazole photoswitches
Beilstein J. Org. Chem. 2025, 21, 830–838, doi:10.3762/bjoc.21.66
- -art technologies ranging from energy-storage materials [6][7] to pharmacology [8][9][10][11], materials chemistry [12][13], control of peptides structure [14][15] or proteins [16], as antibacterial agents [17][18], smart coating [19], or multivalent photoresponsive systems [20][21], to name only a few
New advances in asymmetric organocatalysis II
Beilstein J. Org. Chem. 2025, 21, 766–769, doi:10.3762/bjoc.21.60
- organocatalysis. Even toward the end of the 20th century, there have been a few pioneering studies that should be counted as examples of asymmetric organocatalysis. The works of Jacobsen, Miller, Shi, and Denmark et al. marked the early sparks of interest in this type of chemistry based on catalysis by peptides
Origami with small molecules: exploiting the C–F bond as a conformational tool
Beilstein J. Org. Chem. 2025, 21, 680–716, doi:10.3762/bjoc.21.54
- , fragrance chemicals, organocatalysts, and peptides. This comprehensive review summarises developments in this field during the period 2010–2024. Keywords: conformational analysis; medicinal chemistry; organofluorine chemistry; stereoselective fluorination; Introduction In the art of origami, a
- scaffolds – alkanes – then we will progress to ethers, alcohols, sugars, amines (and their derivatives), carbonyl compounds, peptides, and finally sulfur-containing compounds. By arranging the material in this way, we hope that newcomers to the field might be able to readily envisage ways to apply these
- of this phenomenon will be presented in section 7 (peptides). It was stated above that the NH···F interaction (i.e., II, Figure 12) is not dominant. However, this interaction has been successfully exploited within the slightly different structural context of anilides (e.g., 113–115, Figure
Asymmetric synthesis of fluorinated derivatives of aromatic and γ-branched amino acids via a chiral Ni(II) complex
Beilstein J. Org. Chem. 2025, 21, 659–669, doi:10.3762/bjoc.21.52
- modify a series of peptide and protein-related properties such as stability, specificity, and folding. In this regard, fluorinated amino acids are particularly important. Incorporation of fluorinated groups into the sequence of peptides and proteins can, for instance, regulate the respective
- aromatic–aromatic interactions. For example, our group highlighted the influence of different fluorinated phenylalanine analogs on the aggregation rate of amyloid-forming NFGAIL peptides [14]. Amino acids 2 and 3, with their respective fluorination pattern, might be fascinating compounds in this context
Photocatalyzed elaboration of antibody-based bioconjugates
Beilstein J. Org. Chem. 2025, 21, 616–629, doi:10.3762/bjoc.21.49
- conjugation methods often face challenges related to site-selectivity and heterogeneous product mixtures, highlighting the need to develop new, innovative chemical strategies. Photoredox chemistry emerges as a powerful tool in this context, enabling precise, mild, and selective modifications of peptides and
- disulfide bridging sites in biomolecules to introduce specific functional groups (Figure 6) [44]. The bioconjugation reaction is based on thiol–yne coupling. Originally developed on peptides and proteins, this approach was applied to a fragment antigen-binding (Fab) antibody fragment (approximately 46 kDa
Binding of tryptophan and tryptophan-containing peptides in water by a glucose naphtho crown ether
Beilstein J. Org. Chem. 2025, 21, 541–546, doi:10.3762/bjoc.21.42
- Gianpaolo Gallo Bartosz Lewandowski Laboratory of Organic Chemistry, ETH Zürich, Vladimir-Prelog-Weg 3, 8093 Zürich, Switzerland 10.3762/bjoc.21.42 Abstract Tryptophan fulfills a plethora of important functions in nature both in its free form and as a component of peptides and proteins. Selective
- peptides [4][5]. Tryptophan also serves as a substrate to produce hormones such as serotonin or melatonin [6][7]. Due to the biological relevance of tryptophan synthetic receptors for this amino acid are highly sought after [8]. From a biological perspective it is especially desirable to achieve selective
- aqueous media is limited (Figure 1a–c) [13][14][15][16][17][18]. In particular, receptors which bind tryptophan residues in peptides are rare [19][20]. Recently, we developed a glucose-based naphtho crown ether 1 (Figure 1d) which binds amino acid methyl esters with aromatic side chains chemoselectively
Beyond symmetric self-assembly and effective molarity: unlocking functional enzyme mimics with robust organic cages
Beilstein J. Org. Chem. 2025, 21, 421–443, doi:10.3762/bjoc.21.30
- release [216] and even switch catalysis on and off [196]. MOCs containing peptides in the edge pieces also look promising to direct catalysis [217]. Extended frameworks Metal-organic frameworks (MOFs) [218][219] and covalent organic frameworks (COFs) [220][221][222][223][224] are well-studied as
Red light excitation: illuminating photocatalysis in a new spectrum
Beilstein J. Org. Chem. 2025, 21, 296–326, doi:10.3762/bjoc.21.22
Dioxazolones as electrophilic amide sources in copper-catalyzed and -mediated transformations
Beilstein J. Org. Chem. 2025, 21, 200–216, doi:10.3762/bjoc.21.12
- yields (16a–c). Moreover, alkyl groups were tolerated during the formation of N-acyl iminophosphoranes (16d, 16f). It is noteworthy that dioxazolones derived from bioactive motifs, such as peptides, natural products, and commercially available drugs were also compatible with this transformation
- late-stage functionalizations of complex scaffolds such as peptides, drug molecules, and natural products containing unprotected free OH and NH groups are anticipated. Proposed reaction pathway for the copper-catalyzed synthesis of δ-lactams from dioxazolones. Proposed reaction mechanism for the copper
Recent advances in organocatalytic atroposelective reactions
Beilstein J. Org. Chem. 2025, 21, 55–121, doi:10.3762/bjoc.21.6
Hot shape transformation: the role of PSar dehydration in stomatocyte morphogenesis
Beilstein J. Org. Chem. 2025, 21, 47–54, doi:10.3762/bjoc.21.5
- ) emerged as another solvent yielding monodisperse assemblies. HFIP promotes formation of alpha helices in peptides and this property yielded vesicles with different morphologies [30]. The resulting vesicles looked darker compared to those formed in DMF, as observed through TEM (Supporting Information File
Synthesis of extended fluorinated tripeptides based on the tetrahydropyridazine scaffold
Beilstein J. Org. Chem. 2024, 20, 3174–3181, doi:10.3762/bjoc.20.262
- intramolecular Michael addition. Preliminary conformational studies on tripeptides including this scaffold in the central position show an extended conformation in solution (NMR) and in the solid state (X-ray). Keywords: fluoroalkyl groups; heterocycles; hydrazino acids; peptides; tetrahydropyridazines
- ; Introduction The synthesis of molecules capable of mimicking the various secondary structures and key functions of proteins is a major challenge in medicinal chemistry, especially in the fields of protein–protein interactions [1][2]. Accordingly, the incorporation of heterocyclic amino acids into peptides
- tetrahydropyridazine scaffold is also found in numerous natural linear or cyclic peptides such as svetamycins or antrimycins as dehydropiperazic acid (Figure 2) [10]. Whereas many publications have been devoted to the synthesis and structure of piperazic acid derivatives (dehydro, chloro, hydroxy, …) [11][12], nothing
Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies
Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261
- approaches Alzheimer’s disease (AD) The pathogenesis of AD is still not clear but is marked as a multifactorial disease [24], including a good deal of hypotheses involving the cholinergic hypothesis, glutamate excitotoxicity, tau aggregation, abnormal extracellular accumulation of Aβ peptides, and oxidative
- carboxylic building block. The obtained molecules were evaluated for their ability to inhibit β-amyloid aggregation by the interaction with two β‐amyloid peptides, Aβ1‐42 and AβpE3‐42. The aggregation inhibition experiment, which measures the decrease of fluorescence, was carried out with the thioflavin T
- –melatonin hybrids (LATMHs), deciding to incorporate melatonin as a new target for the MTDL [39]. Melatonin has the ability to combat OS, which is a crucial factor in the pathogenesis of AD. Moreover, it plays a neuroprotective role against Aβ-peptides and easily crosses the blood–brain barrier (BBB
Chemical structure metagenomics of microbial natural products: surveying nonribosomal peptides and beyond
Beilstein J. Org. Chem. 2024, 20, 3050–3060, doi:10.3762/bjoc.20.253
- . While microbial nonribosomal peptides have been the focus of chemical structure metagenomics efforts thus far, it is in principle applicable to other natural product families. The future outlook of this new approach will also be discussed. Keywords: bioinformatics; chemical structure metagenomics
- ; natural products; natural product discovery; nonribosomal peptides; Introduction Natural products present diverse structures to elicit a wide range of biological activities and are of paramount importance to both translational science and basic research. Despite not knowing the underlying active
- approaches have already facilitated the discovery of numerous new bioactive molecules [29][30][31][32][33][34][35][36] and shed light on the scope of past discovery efforts by uncovering select oversampled/underexplored niches in the natural product chemical spaces [37]. While nonribosomal peptides (NRP
Recent advances in transition-metal-free arylation reactions involving hypervalent iodine salts
Beilstein J. Org. Chem. 2024, 20, 2891–2920, doi:10.3762/bjoc.20.243
- with thiophene favored the formation of phenylated products as the major outcome. Additionally, mercaptoazoles were found to be compatible with this protocol, expanding its applicability to include these compounds. The functionalization of peptides and proteins plays a vital role in the development of
- functional entities. In 2021, Byrne et al. published an impressive report detailing a novel protocol for the chemoselective late-stage variation of proteins and peptides at cysteine residues 91 and 94 in an aqueous buffer in the presence of suitably functionalized diaryliodonium salts 92 and 95 (Scheme 38
- high conversions (83–93%) in 1–20 hours. Purification by HPLC yielded the isolated oxime conjugates in excellent amounts. This methodology presents a promising approach for the late-stage variation of proteins and peptides, offering versatility and efficiency in aqueous environments. In addition to
Young investigators in natural products chemistry, biosynthesis, and enzymology
Beilstein J. Org. Chem. 2024, 20, 2720–2721, doi:10.3762/bjoc.20.229
- clusters, and enzymes, development of chemical probes, biocatalysis and chemoenzymatic total synthesis, enzymatic mechanisms, and computational investigations of chemical structures and reactions. All of the major classes of natural products are represented here: nonribosomal peptides, ribosomally
- -synthesized and posttranslationally modified peptides, polyketides, alkaloids, aromatics, and terpenoids. This generation of young investigators will continue to shape the field of natural products for years to come. We pass on our greatest thanks to all the contributors to this special thematic issue. We
The scent gland composition of the Mangshan pit viper, Protobothrops mangshanensis
Beilstein J. Org. Chem. 2024, 20, 2644–2654, doi:10.3762/bjoc.20.222
- species. These glands can contain various lipids and peptides, but very often also complex mixtures of carboxylic acids. We report here the occurrence of novel methyl-branched unsaturated acids found in the secretions of six captive individuals living in a zoo. The structures of these compounds, 4.6
Applications of microscopy and small angle scattering techniques for the characterisation of supramolecular gels
Beilstein J. Org. Chem. 2024, 20, 2608–2634, doi:10.3762/bjoc.20.220
- was achieved by Firipis et al. where they used SAXS to quantify hydrogels formed from self-assembling bioactive peptides Fmoc-DIKVAV and Fmoc-FRGDF (D = aspartic acid, I = isoleucine, K = lysine, V = valine, A = alanine, F = phenylalanine, R = arginine, G = glycine) [88]. The physical characteristics
A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis
Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214
Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers
Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199
- provide unprecedented depth of proteome coverage and the possibility to detect desired modified peptides with high sensitivity. The chemical ‘linker’ connecting an active compound–protein conjugate with a detection tag is the critical component of all chemical proteomic workflows. In this review, we
- speed of acquisition of mass spectra leads to ever better coverage of proteomes submitted for analysis, the throughput has not yet reached the point in which all peptides and their modified forms can be identified and characterized in a single experiment. Therefore, an enrichment of the probe-modified
- peptides or enhancement of the signal-to-noise ratio is necessary for successful analysis (Figure 1). The future challenge to complete the chemical proteomic analysis will include the absolute quantification of those identified NP–peptide conjugates to estimate protein occupancy (Figure 1). Although mass
Computational toolbox for the analysis of protein–glycan interactions
Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180
- . FlexAID [123]: It is a molecular docking software capable of setting small molecules and peptides as ligands, and proteins and nucleic acids serve as docking targets. Notably, FlexAID shows support for full ligand flexibility and the flexibility of side chains in the target. It achieves this by employing
Negishi-coupling-enabled synthesis of α-heteroaryl-α-amino acid building blocks for DNA-encoded chemical library applications
Beilstein J. Org. Chem. 2024, 20, 1922–1932, doi:10.3762/bjoc.20.168
- Matteo Gasparetto Balazs Fodi Gellert Sipos X-Chem Zrt., Záhony u. 7, DA Building, Graphisoft Park, Budapest, 1031, Hungary 10.3762/bjoc.20.168 Abstract Amino acids are vital motifs in the domain of biochemistry, serving as the foundational unit for peptides and proteins, while also holding a
- bifunctional building blocks (BBs) can quickly increase the diversity of these molecular libraries [6]. Hence, DEL practitioners constantly seek access to novel building blocks [7]. Amino acids (AAs) are vital motifs in the domain of biochemistry, serving as the foundational unit for peptides and proteins
Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity
Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159
- substantial threat to global public health, demanding urgent attention and action. This study focuses on lanthipeptides, ribosomally encoded peptides that display significant structural diversity and hold promising potential as antibiotics. Genome mining was employed to locate biosynthetic gene clusters (BGCs
- , including one super-cluster containing two co-localized operons from Clostridium cellulovorans 743B, that encode for two new peptides named clostrisin and cellulosin. Each operon was heterologously expressed in Escherichia coli. Molecular weights associated with the expected post-translational modifications
- of the purified lanthipeptide were confirmed by MS–MS/MS analysis for cellulosin, while clostrisin was not post-translationally modified. Both peptides demonstrated antimicrobial activity against multidrug-resistant bacteria, such as a clinical strain of Staphylococcus epidermidis MIQ43 and
Other Beilstein-Institut Open Science Activities
