Deciphering the mechanism of γ-cyclodextrin’s hydrophobic cavity hydration: an integrated experimental and theoretical study

• Stiliyana Pereva,
• Stefan Dobrev,
• Tsveta Sarafska,
• Valya Nikolova,
• Silvia Angelova,
• Tony Spassov and
• Todor Dudev

Beilstein J. Org. Chem. 2024, 20, 2635–2643, doi:10.3762/bjoc.20.221

• contains 7.1 water molecules, which occupy 14 sites [24]. Literature TG data show a 7.2% mass loss up to 105 °C, with a peak maximum at 63.4 °C, corresponding to the water release [25]. DSC data correlate with the TG results, revealing an endothermic peak related to the water release at 80.9 °C [25]. In

• a maximum at about 365 K associated with the release of crystal water. The enthalpy change due to water release from γ-CD was determined to be 112 J g−1 (20.5 kJ mol−1 H2O). This value is lower than that (35–40 kJ mol−1 H2O) obtained for β-CD [14] and that found by Bilal et al. [26] and appears

• similar to the value experimentally obtained for α-CD (22.1 ± 3.8 and 30.0 ± 2.5 kJ mol−1 H2O for the first and second water release, respectively) [13]. The thermogravimetric curve shows a 10% weight loss in the temperature range 300–450 K, associated with the release of both crystal water inside the

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

• Nian Li,
• Ruzal Sitdikov,
• Ajit Prabhakar Kale,
• Joost Steverlynck,
• Bo Li and
• Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

• anodic oxidation cleaves the diazene, resulting in the formation of an acyl radical and the release of molecular nitrogen. The subsequent step involves the decarboxylation of the acyl radical to produce an alkyl radical. This method was successfully applied to the late-stage functionalization of

Phenylseleno trifluoromethoxylation of alkenes

• Clément Delobel,
• Armen Panossian,
• Gilles Hanquet,
• Frédéric R. Leroux,
• Fabien Toulgoat and
• Thierry Billard

Beilstein J. Org. Chem. 2024, 20, 2434–2441, doi:10.3762/bjoc.20.207

• resulting from the substitution of the CF3O group by the trifluoroacetoxy group was then observed. The activation of a fluorine atom from the CF3O group by H+ could be envisaged, which would then trigger the selenium attack to release difluorophosgene and HF, thus generating an episelenonium, which would

Asymmetric organocatalytic synthesis of chiral homoallylic amines

• Nikolay S. Kondratyev and
• Andrei V. Malkov

Beilstein J. Org. Chem. 2024, 20, 2349–2377, doi:10.3762/bjoc.20.201

• release catalyst 78 completing the catalytic cycle (Scheme 17). In a mechanistic probe, the proposed reaction intermediates were used as starting electrophiles under the standard reaction conditions (Scheme 18). In all three cases, identical outcomes were achieved, supporting the proposed catalytic cycle

Tandem diazotization/cyclization approach for the synthesis of a fused 1,2,3-triazinone-furazan/furoxan heterocyclic system

• Yuri A. Sidunets,
• Valeriya G. Melekhina and
• Leonid L. Fershtat

Beilstein J. Org. Chem. 2024, 20, 2342–2348, doi:10.3762/bjoc.20.200

• conducted a series of studies. Thus, due to the presence of a furoxan fragment, triazinones 1 can act as NO-donors. To assess their NO-release capability, compounds 1 were kept for 1 hour under physiological conditions (pH 7.4, 37 °C), then Griess reagent was added and studied by spectrophotometry (this

• ). NO release data. Tandem diazotization/azo coupling reactions of (1,2,5-oxadiazolyl)carboxamides containing an amino functionality. Synthesis of target furoxanotriazinones 1a–h. The synthesis of furazanotriazinones 7a–h. Control experiment with Na15NO2. Optimization of the diazotization of amide 2aa

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• , the linkers were proposed and designed to mainly facilitate the enrichment of the probe–protein or probe–peptide conjugates and their selective release after enrichment. In this review we would like to highlight the fragmentation properties of the different linkers and resulting ions as the valuable

• proteome and enrichment-based methods. There are several chemical proteomics linkers reported that improve ionization of the probe–peptide conjugates or release a reporter ion during fragmentation or both (Figure 7). The reporter ion is important as it may serve two purposes. First, it facilitates the

• -step synthesis. However, in comparison to the DMP-tag or AzidoTMT the release of the reporter ion from the SOX-tag has somewhat lower intensity. Calle et al. designed, synthesized, and validated a series of ‘clickable’ linkers for characterization of protein O-glycosylation containing positively

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

Efficacy of radical reactions of isocyanides with heteroatom radicals in organic synthesis

• Akiya Ogawa and
• Yuki Yamamoto

Beilstein J. Org. Chem. 2024, 20, 2114–2128, doi:10.3762/bjoc.20.182

• , which add to isocyanides to form the imidoyl radicals. The capture of the imidoyl radicals with the azido group proceeds with the release of N2, and the amino radical formed abstracts hydrogen from the surroundings (Scheme 17a and 17b) [61]. The imidoyl radical formed by the addition of Ph2P(O)• to

• addition of radical species to the isocyano group of 29 to form the imidoyl radical 30 as a key intermediate, which adds intramolecularly to the ortho-aryl group. The subsequent aromatization with the release of hydrogen (or proton) affords 31 in good yields. Nanni et al. reported the reaction of 2

Solvent-dependent chemoselective synthesis of different isoquinolinones mediated by the hypervalent iodine(III) reagent PISA

• Ze-Nan Hu,
• Yan-Hui Wang,
• Jia-Bing Wu,
• Ze Chen,
• Dou Hong and
• Chi Zhang

Beilstein J. Org. Chem. 2024, 20, 1914–1921, doi:10.3762/bjoc.20.167

• then undergoes a proton shift to provide intermediate B. Intermediate B collapses via reductive elimination to give nitrenium ion C, along with the release of iodobenzene and sulfamate. Finally, nucleophilic attack of the olefin moiety of C on the electrophilic nitrogen atom, followed by the

• migration and reductive elimination, along with the release of iodobenzene and sulfamic acid. Cyclization of protonated G takes place to afford the intermediate H. Finally, release of water and β-proton elimination produces the rearranged product 3a (Scheme 8). Conclusion In summary, we reported the

2-Heteroarylethylamines in medicinal chemistry: a review of 2-phenethylamine satellite chemical space

• Carlos Nieto,
• Alejandro Manchado,
• Ángel García-González,
• David Díez and
• Narciso M. Garrido

Beilstein J. Org. Chem. 2024, 20, 1880–1893, doi:10.3762/bjoc.20.163

• improvement through inverse agonism at histamine receptor 3 (H3) using recombinant isoforms. This finding corrects their previous assumption of betahistidine acting as an antagonist. Inhibition of cAMP formation and [3H]arachidonic acid release concluded the inverse agonist role. Five-membered heteroaromatic

• of Th1 cytokine, leukotriene and chemokines release, or IL-6 induction. Histamine targets histamine receptors H1–4, triggering pro-inflammatory or anti-inflammatory events depending on the receptor type and cells involved [45][49]. Histamine also plays a critical role in both vertebrates and

• -ring bioisostere, but as carboxylic acid one, Schwarz et al. [79] developed tetrazole-based pregabalin bioisosteres 113–118 (Scheme 18). The target protein α2-δ is involved in neurotransmitters release reduction, as a model of anxiety and neuropathic pain. In general, submicromolar affinities were

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• then reacted with a different isocyanide (R4–NC) in the presence of a palladium catalyst. The release of nitrogen from intermediates I resulted in nitrenes II, which in turn involved in the intramolecular transfer to yield species III. The carbodiimides IV, which were formed through reductive

Synthesis of polycyclic aromatic quinones by continuous flow electrochemical oxidation: anodic methoxylation of polycyclic aromatic phenols (PAPs)

• Hiwot M. Tiruye,
• Solon Economopoulos and
• Kåre B. Jørgensen

Beilstein J. Org. Chem. 2024, 20, 1746–1757, doi:10.3762/bjoc.20.153

• flowrate of 100 µL/min. The current was increased from 1 mA to 13 mA to increase the electron equivalents from 1 F/mol to 8 F/mol at a potential of 1.7–3.0 V. The crudes, after evaporation of the solvents, were further hydrolysed with a mixture of HCl, acetic acid, and water to release the quinones before

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

• final CO insertion to release the ester. After an acid hydrolysis which produced 36, a basic treatment induced the condensation reaction to yield the heterocycle 37 in 99% yield. This reaction sequence was also applied to the acetates of ethisterone and ethynylestradiol, resulting in similar yields in

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• stereoselective reduction of the C5 carbonyl group to form thioester 65. The subsequent PKS module TylGV introduces two more carbons from malonyl-CoA and reduces the carbonyl group at the C3 position to produce thioester 66 on the ACP domain. The thioesterase (TE) domain then catalyzes the release of 67 from the

• ][98][99]. The reduction (Red) domain at the C-terminus of SfmC reduces the thioester 87 to release aldehyde 88 from SfmB, while the adenylation (A) domain activates 86 and loads it onto the PCP domain of SfmC. The Pictet–Spengler (PS) domain then catalyzes the first diastereoselective PS cyclization

Ring opening of photogenerated azetidinols as a strategy for the synthesis of aminodioxolanes

• Henning Maag,
• Daniel J. Lemcke and
• Johannes M. Wahl

Beilstein J. Org. Chem. 2024, 20, 1671–1676, doi:10.3762/bjoc.20.148

• strategy is founded on the build and release of molecular strain and achieves a formal transposition of a methyl group. During light irradiation, 3-phenylazetidinols are forged as reaction intermediates, which readily undergo ring opening upon the addition of electron-deficient ketones or boronic acids

• , endergonic transformations can be realized [3]. A promising strategy for the synthesis of complex products lies in the combination of photochemical cyclization and strain-release reaction (Scheme 1a) [4]. In this ‘build and release approach’, a simple precursor is cyclized upon irradiation. Subsequently, a

• functionalization step such as a ring-opening event is implemented, facilitated by the pre-installed strain energy of the four-membered ring [5][6][7]. The implementation of a build and release strategy, as depicted in Scheme 1a, necessitates the full compatibility of both individual reaction steps, thus placing

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• recombinant elements” (PURE) was developed by Shimizu et al. [45]. PURE contains all the necessary components of the Escherichia coli ribosomal machinery, such as the ribosome, initiation, elongation, and release factors, and pre-charged tRNAs. In the first step, mRNA or a plasmid containing the desired

Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty

• Weimao Zhong and
• Vinayak Agarwal

Beilstein J. Org. Chem. 2024, 20, 1635–1651, doi:10.3762/bjoc.20.146

• -directed mutagenesis experiments. Another ι-carrageenase, Car1293, was identified, expressed in E. coli, and characterized from macroalgae-associated Microbulbifer sp. YNDZ01 [89]. β-Glucosidases The β-glucosidases are enzymes that can hydrolyze the β-ᴅ-glycosidic bonds to release glucose at the non

Divergent role of PIDA and PIFA in the AlX₃ (X = Cl, Br) halogenation of 2-naphthol: a mechanistic study

• Kevin A. Juárez-Ornelas,
• Manuel Solís-Hernández,
• Pedro Navarro-Santos,
• J. Oscar C. Jiménez-Halla and
• César R. Solorio-Alvarado

Beilstein J. Org. Chem. 2024, 20, 1580–1589, doi:10.3762/bjoc.20.141

• first equivalent of aluminum chloride to give the corresponding adduct PIFA–AlCl3. Next, a chlorine atom is transferred to the iodine(III) center to yield I-1–Cl via TS1–Cl with the release of the complex TFAO–AlCl2. Then, the second equivalent of aluminum chloride coordinates the TFAO ligand, giving

• rise to the chlorinating species I-2–Cl in equilibrium with I-3–Cl. At this point, 2-naphthol reacts, leading to the formation of the ion pair I-4–Cl via chlorine atom transfer, which then yields the adduct I-5–Cl trough transition state TS2–Cl. Then, the release of the second equivalent of the TFAO

• with TFA–OH–AlCl2, I-5–Cl (ΔG = −2.6 kcal/mol), which spontaneously yields the final 1-chloro-2-naphthol (P–Cl) with concomitant release of TFAO–AlCl2 in a highly exothermic process (ΔG = −44.2 kcal/mol, Figure 1). Other relevant routes for this chlorination process, which involve a different

Synthesis of 4-functionalized pyrazoles via oxidative thio- or selenocyanation mediated by PhICl₂ and NH₄SCN/KSeCN

• Jialiang Wu,
• Haofeng Shi,
• Xuemin Li,
• Jiaxin He,
• Chen Zhang,
• Fengxia Sun and
• Yunfei Du

Beilstein J. Org. Chem. 2024, 20, 1453–1461, doi:10.3762/bjoc.20.128

• to give (SeCN)2 [60]. Then, one selenium atom of (SeCN)2 nucleophilically attacks the iodine center in PhICl2 to generate intermediate A, which was further transformed into intermediate B by release of one molecule of iodobenzene. Next, the nucleophilic attack of chloride anion to the bivalent

Manganese-catalyzed C–C and C–N bond formation with alcohols via borrowing hydrogen or hydrogen auto-transfer

• Mohd Farhan Ansari,
• Atul Kumar Maurya,
• Abhishek Kumar and
• Saravanakumar Elangovan

Beilstein J. Org. Chem. 2024, 20, 1111–1166, doi:10.3762/bjoc.20.98

• , respectively. The proposed mechanism suggested that the active amido species (Mn5-a) was formed by treating Mn5 with the base. Then, the alkoxy intermediate Mn5-b is formed by reaction with the alcohol followed by release of an aldehyde and formation of the manganese hydride Mn5-c. The released aldehyde

• mesitylene (Scheme 13). The formation of manganese(III) alkoxide intermediate Mn7-a, was believed to be the first step in the reaction mechanism which then releases the aldehyde under formation of hydride complex, Mn7-b. Then, the alcohol reacts with the hydride complex under release of hydrogen gas and

Light on the sustainable preparation of aryl-cored dibromides

• Fabrizio Roncaglia,
• Alberto Ughetti,
• Nicola Porcelli,
• Biagio Anderlini,
• Andrea Severini and
• Luca Rigamonti

Beilstein J. Org. Chem. 2024, 20, 1076–1087, doi:10.3762/bjoc.20.95

• radical initiator, such as azobisisobutyronitrile (AIBN) [31][32][33][34] or benzoyl peroxide [35][36]; substances affected by safety concerns on transportation, storage, and use. Moreover, the regeneration of the halogen comes at a cost: the release of stoichiometric amounts of succinimide, whose

Enantioselective synthesis of β-aryl-γ-lactam derivatives via Heck–Matsuda desymmetrization of N-protected 2,5-dihydro-1H-pyrroles

• Arnaldo G. de Oliveira Jr.,
• Martí F. Wang,
• Rafaela C. Carmona,
• Danilo M. Lustosa,
• Sergei A. Gorbatov and
• Carlos R. D. Correia

Beilstein J. Org. Chem. 2024, 20, 940–949, doi:10.3762/bjoc.20.84

• all other lactams as R was done by analogy. The assignment of the absolute stereochemistry allowed us to propose a rationale for the Heck–Matsuda reaction (Scheme 7). Upon activation of the catalyst (I), oxidative addition of aryldiazonium salt and subsequent nitrogen release generates the cationic

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• itself accessible in good yields from allyl chloride 1 using a route based on that reported by Schlüter [28]. Bifunctional 1,2-BCP (±)-4 bearing orthogonally protected alcohol functionalities was obtained from 3a through a three-step sequence of strain-release radical ring-opening with iodochloromethane

• . Bennet and co-workers also reported the synthesis of 1-amino-1,2-BCPs (±)-11a–e via a similar strategy (Scheme 1C) [29]. They were able to prepare differently-substituted [1.1.1]propellanes 3b–f and subject these to strain-release amination reactions. The synthesis was shown to tolerate typical alcohol

• 1,5-BCHeps is slightly smaller than in meta-benzene but the substituent and dihedral angles are remarkably similar. 1,5-BCHeps 126 and 127 were first reported by Gassman and Proehl [61] and by Wada [62]. The most common synthetic approach today is via the strain-release ring-opening of [3.1.1

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• allows for release and subsequent detection of heme-ligated iron [47]. Protein concentration was determined using bicinchoninic acid protein quantification assay (Pierce). The oligomeric state was determined by processing the protein through Superdex 200 Increase 10/300 GL analytical size exclusion

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

• actinomycetes is regulated by various bacterial hormones, such as A-factor (4) [31] and SCB1 (5) [32]. Normally, the tetR regulator negatively regulates the expression of biosynthetic genes in actinomycetes, but bacterial hormones release this repression [33][34]. A-factor, SCB1, and avenolide (6) induce the

• ), which upon sensing ROS, release their repression and activate the expression of various genes [93][94][95]. Wei et al. reported that the production of validamycin A (25) by Streptomyces hygroscopicus 5008 could be activated at the transcriptional level by simply adding hydrogen peroxide (H2O2; which