Possible bi-stable structures of pyrenebutanoic acid-linked protein molecules adsorbed on graphene: theoretical study

• Yasuhiro Oishi,
• Motoharu Kitatani and
• Koichi Kusakabe

Beilstein J. Org. Chem. 2024, 20, 570–577, doi:10.3762/bjoc.20.49

• their responses are observed. The elastic wave is excited by a pump light, and the response of the substrate is observed via the probe light. The refractive index of metallic substrates such as graphene may change due to the arrival of elastic waves, and this change can be observed by detecting the

• reflected light of the probe light. For such laser-based biosensors, graphene's conductivity can provide a unique advantage. In fact, the conductivity of multilayered graphene is highly anisotropic. Therefore, the use of multilayer graphene avoids the burning of biomaterials by lasers irradiated from the

Synthesis of photo- and ionochromic N-acylated 2-(aminomethylene)benzo[b]thiophene-3(2Н)-ones with a terminal phenanthroline group

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Irina V. Dubonosova,
• Olga Yu. Karlutova,
• Oleg P. Demidov,
• Alexander D. Dubonosov and
• Vladimir A. Bren

Beilstein J. Org. Chem. 2024, 20, 552–560, doi:10.3762/bjoc.20.47

• a terminal phenanthroline receptor substituent was synthesized. Upon irradiation in acetonitrile or DMSO with light of 436 nm, they underwent Z–E isomerization of the C=C bond, followed by very fast N→O migration of the acyl group and the formation of nonemissive O-acylated isomers. These isomers

• light and H+ or sequential addition of Fe2+ and AcO− ions. Keywords: fluorescence; molecular switches; N→O acyl rearrangement; naked eye effect; photochromism; Introduction Photochromism is defined as the reversible transformation of a molecular entity between different forms, having different

• change depending on the intensity of sunlight), photochromic tags for biological research and optical sensors [15][16][17][18][19][20][21]. To develop new dual-mode molecular switches capable of efficient modulation of optical and fluorescent properties, both upon irradiation with visible light and upon

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• other hand, photochemical stimuli offer cleaner alternatives, relying solely on a light source that can be focused on specific areas. However, they may be limited by photostationary states and penetration depth in absorbing media that might prevent full conversion and potential side photochemical

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• competitively inhibit the labeling of recombinant GrsA using the ABP ʟ-Phe-AMS-BPyne (3). GrsA (1 µM) was incubated with probe 3 (1 µM) in the absence or presence of either inhibitor 1, 2, or 4–9 (100 µM). The mixtures were exposed to ultraviolet light at 365 nm to form a covalent bond between GrsA and the

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• radicals were successfully generated by subjecting NHPI esters to light irradiation in the presence of the photoreductant 1,6-bis(dimethylamino)pyrene (BDMAP). Following their initial discovery, multiple studies have shown their versatility as radical progenitors under thermal, photochemical, and

• readers to recently published review articles for additional discussion [30][31]. Discussion Mechanism under photochemical conditions In this section we provide a summary of the various conditions and activation modes employed in radical reactions of NHPI esters using visible-light irradiation. Upon

• absorption of light, an excited photocatalyst (*PC) engages in single-electron transfer (SET) with either donor (D) or acceptor (A) molecules (Scheme 3) [8][36]. Accordingly, a reductive quenching mechanism (path a) will operate when an excited photocatalyst effects the one-electron oxidation of a

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• probes, organic light-emitting diodes, and organic solar cells [2][7][8][9]. The principal way for the preparation of these heterocycles involves the coupling of 3H-phenoxazin-3-ones with variously functionalized aromatic amines. This is followed by the cyclization of the initially formed adducts [10][11

• (31), is formed between the nitro and imino groups of the N-aryl ring. The compounds 4a–h intensely absorb light in the spectral range of 400–550 nm, with maxima at 439–459 nm, ε = 20600–37100 M−1⋅cm−1 (Figure 3 and Table 1). The introduction of an amino group into the p-position of the N-phenyl

Spatial arrangements of cyclodextrin host–guest complexes in solution studied by ¹³C NMR and molecular modelling

• Konstantin Lebedinskiy,
• Ivan Barvík,
• Zdeněk Tošner,
• Ivana Císařová,
• Jindřich Jindřich and
• Radim Hrdina

Beilstein J. Org. Chem. 2024, 20, 331–335, doi:10.3762/bjoc.20.33

• well-separated light and dark clouds (belonging to different prochiral carbons from a pair) have larger radii and run deeper into the α-CD cavity than the red density with mixed light and dark clouds. Accordingly, our NMR experiment only showed splitting for the green and blue atoms (see Figure 1

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• development, immunity, and stress signaling [2][3]. In light of the burgeoning interest in the intersection of glycobiology and biomedicine, the characterization of new lectins has carved out a significant niche in scientific research. Specifically, lectins have emerged as invaluable tools for staining cells

• (Val6 to Asp132) could be modelled, and unambiguous electron density permitted us to locate and model four cation binding sites (three in each structure) and one sugar binding site (Figure 4a,b and Figure S4, Supporting Information File 2). The complexed structures allowed us to shed light on the

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• -conjugated polycyclic compounds appeared as particularly valuable in this field. Indeed, many of them demonstrated excellent performances as active components of electronic devices such as organic field effect transistors (OFETs), organic photovoltaic cells (OPVs) and organic light-emitting diodes (OLEDs

• or crystals, or adsorbed on metallic substrates [9][10][11][12]. Conversion of the non-planar soluble precursor into the flat π-conjugated target compound is triggered on demand by a stimulus such as thermal activation, irradiation with light or injection of electrons, leading to the elimination of

• concept, a thin-film of the latter sulfoxide precursor, spin-coated onto a glass sample, yielded full conversion to PBI 6a in only 2 min, confirming the potential application of this precursor in electronic devices. Light irradiation was next tested as an alternative activation method, since

Unveiling the regioselectivity of rhodium(I)-catalyzed [2 + 2 + 2] cycloaddition reactions for open-cage C₇₀ production

• Cristina Castanyer,
• Anna Pla-Quintana,
• Anna Roglans,
• Albert Artigas and
• Miquel Solà

Beilstein J. Org. Chem. 2024, 20, 272–279, doi:10.3762/bjoc.20.28

• (fulleroid) derivatives. The aim is to shed light on the regioselectivity of the process through both experimental and computational approaches. In addition, the photooxidation of one of the C–C double bonds in the synthesized bis(fulleroids) affords open-cage C70 derivatives having a 12-membered ring

• larger orifices in C70 derivatives given that the larger cavity compared to its C60 counterpart can facilitate the encapsulation of multiple atoms and molecules [40][43][53][54]. To fulfil this objective, compound 2a was subjected to oxidative cleavage by exposing it to light in the presence of air

Nucleophilic functionalization of thianthrenium salts under basic conditions

• Xinting Fan,
• Duo Zhang,
• Xiangchuan Xiu,
• Bin Xu,
• Yu Yuan,
• Feng Chen and
• Pan Gao

Beilstein J. Org. Chem. 2024, 20, 257–263, doi:10.3762/bjoc.20.26

• Abstract In recent years, S-(alkyl)thianthrenium salts have become an important means of functionalizing alcohol compounds. However, additional transition metal catalysts and/or visible light are required. Herein, a direct thioetherification/amination reaction of thianthrenium salts is realized under metal

• ]. Recently, Ritter and co-workers reported that alkylthianthrenium salts can be employed to undergo reactions with N/O-nucleophiles under photocatalytic conditions [46]. Nevertheless, additional transition metal catalysts, visible light, or electrochemical devices are required for the reported works

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• undergo a nucleophilic substitution. Indeed, upon boiling with an excess of sodium methoxide in methanol, the crude dinitration product 10(12) gives up to 6% of a new substance with low mobility on sorbents and blue luminescence under UV light. Its spectral analysis confirmed the symmetrical structure

• (Scheme 8). In addition to the spectral data confirming the composition and asymmetric structure of compound 16, a clear sign of the emerging acenaphthylene system is its yellow-orange color, which distinguishes the UV-active (yellow-green luminescence) acenaphthylene 16 from the light-beige UV-inactive

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• (9a, Figure 7) was reported by Wyman and co-workers [37]. Interestingly, compound 9a showed pronounced negative photochromism in benzene with the best E–Z conversion upon irradiation with yellow light (λirr > 520 nm), while in chloroform no photochromism was detected. The formation of the Z-isomer of

• underwent E–Z photoisomerization in benzene upon irradiation with yellow light and returned to E-isomer in darkness at room temperature within about 30 seconds [39]. One year later, Pummerer and Marondel attempted to reproduce this experiment and to detect the Z-isomer of N,N'-dimethylindigo 11a upon

• irradiation with orange light in several solvents [40]. However, due to the technical limitations of the spectrometer, Pummerer and Marondel were not able to detect the short-living Z-11a in aromatic solvents such as benzene, bromobenzene and pyridine. Nevertheless, the E–Z isomerization of 11a was observed

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• solution such as the specific optical rotation [31][33][37][46][57][60][61][62][63], intensity of scattered light [33][37][57][58][60][62][64] or intensity of IR bands [31] against concentration for the presence of discontinuities. The concentrations corresponding to the discontinuities found are taken as

• permeation chromatography was performed in toluene on a column (400 × 20 mm) packed with Bio-Beads S-X3 gel (200–400 mesh, Bio-Rad) using a differential refractive index detector (Knauer). TLC was carried out on Silica Gel 60 F254 plates (Merck), spots were visualized under UV light and by heating plates

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• silica gel 60 F254. Visualisation was performed with UV-light (254 nm) fluorescence quenching, and/or by staining with an 8% H2SO4 dip (stock solution: 8 mL conc. H2SO4, 92 mL EtOH), ninhydrin dip (stock solution: 0.3 g ninhydrin, 3 mL AcOH, 100 mL EtOH) and/or ceric ammonium molybdate dip (stock

• lyophilisation, 1 was obtained as a light brown/orange solid (900 mg, 90%) and required no further purification. Rf = 0.6 (EtOAc/MeOH, 2:3); [α]D +76 (c 1.0, H2O); 1H NMR (500 MHz, D2O) δ 4.92 (d, J = 3.7 Hz, 1H, H-1GalNAc), 4.46 (d, J = 7.8 Hz, 1H, H-1Gal), 4.36 (dd, J = 11.0, 3.7 Hz, 1H, H-2GalNAc), 4.24 (d, J

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• (tetraphenylporphyrin performed equally well but was harder to separate from the products) and irradiated by white LED light under an atmosphere of oxygen. It led to a mixture of unseparable regioisomeric allylic hydroperoxides 2 and 2’ (≈2:1) that were not isolated for instability reasons, but directly engaged in the

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• , the ensuing RE process yields the corresponding TCBD derivatives. The resulting TCBDs and related products exhibit strong light absorption, resulting from the intramolecular charge transfer (ICT) in the visible region; they also exhibit a rich redox chemistry [11]. In the [2 + 2] CA–RE reaction of

• emission increases when they are excited at 420 nm, resulting in white-light emission. The underlying mechanism governing these luminescence properties remains unknown. It has been established that 75 does not exhibit luminescence in its solid-state form, which is attributed to the quenching effects

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, Henan 453007, China 10.3762/bjoc.20.12 Abstract A visible-light-promoted research protocol for constructing dihydropyrido[1,2-a]indolone skeletons is herein described proceeding through a cascade cyclization mediated by trifluoromethyl

• trifluoromethyl radical source under light irradiation. Umemoto’s reagent, which is capable of releasing a trifluoromethyl radical via a photoinduced single-electron-transfer (SET) process, is usually employed to enable the trifluoromethylation of unsaturated substrates [25][26][27]. Herein, we report a protocol

• -reductive quench process (Table 1). The indole substrate 1a was chosen as a model substrate, and the reaction mixture was irradiated under 450 nm visible light for 12 h, resulting in the formation of the desired product 3a, albeit in a relatively low yield (Table 1, entry 1). Control experiments revealed

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• delivered without effect to the binding site, where the DNA-binding benzoquinolizinium ligand can then be generated as needed upon irradiation. Notably, the use of light for the activation of photo-controllable DNA ligands offers several advantages because it is easy to apply, traceless, and non-invasive

• [19]. As a result, several photoactive compounds have been developed, whose DNA-binding properties can be efficiently switched on and off by light [14][20][21][22][23][24][25][26][27][28][29][30][31][32][33][34]. In addition to their DNA-binding properties some annelated quinolizinium derivatives have

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• pressures and high temperatures [13][14][15]. We aim to shed light in these reaction mechanisms and energy profiles by using complementary methodologies as standard density functional theory (DFT) calculations and first-principles Car–Parrinello molecular dynamics (CPMD) simulations. Firstly, we have

Optimizing reaction conditions for the light-driven hydrogen evolution in a loop photoreactor

• Pengcheng Li,
• Daniel Kowalczyk,
• Johannes Liessem,
• Mohamed M. Elnagar,
• Dariusz Mitoraj,
• Radim Beranek and
• Dirk Ziegenbalg

Beilstein J. Org. Chem. 2024, 20, 74–91, doi:10.3762/bjoc.20.9

• and operation of loop reactors are simple. Furthermore, investment and operational costs are typically low. For these reasons, the suitability of a loop reactor was studied in this work for the photocatalytic hydrogen generation process as a potentially scalable photoreactor concept. Suitable light

• , identifying photocatalysts capable of efficient performance across broad sunlight wavelength ranges proves to be a complex endeavor [26][27][28]. Therefore, artificial light sources are typically applied for lab testing of photocatalytic reactions. Compared to conventional light sources, light-emitting diodes

• (LEDs) have plenty of advantages including long life span (up to 100 000 h), robustness, compact size, and high energy efficiency, which make LEDs very attractive as a light source for photocatalytic hydrogen generation studies [29]. In this work, a loop photoreactor for scaling up the photocatalytic

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• was observed for compound 27 was also observed for this compound. The degradation of compound 20 in the presence of light and oxygen is visible as a color change upon leaving a sample of the compound in solution in an open vial, unshielded from light (Figure S2 in Supporting Information File 1). This

• degradation was investigated by UV–vis absorption spectroscopy; the absorption spectrum was measured over time for three different samples, and a notable change in the longest-wavelength absorption maximum was only observed for the sample that was exposed to both light and oxygen (see Figures S3 and S4 in

• a light orange crystalline solid (375 mg, 1.02 mmol, 88%). mp > 250 °C; 1H NMR (500 MHz, CDCl3) δ 7.89 (s, 2H), 7.71 (d, J = 8.0, 2H), 7.59 (s, 2H), 7.42 (d, J = 8.0, 2H), 3.95 (s, 4H), 1.39 (s, 18H) ppm; 13C NMR (126 MHz, CDCl3) δ 149.8, 143.8, 142.5, 140.6, 139.5, 124.1, 122.1, 119.2, 116.3, 37.0

Preparing a liquid crystalline dispersion of carbon nanotubes with high aspect ratio

• Keiko Kojima,
• Nodoka Kosugi,
• Hirokuni Jintoku,
• Kazufumi Kobashi and
• Toshiya Okazaki

Beilstein J. Org. Chem. 2024, 20, 52–58, doi:10.3762/bjoc.20.7

• ) analysis (CPS Instruments, CPS 24000UHR (CR-39)). The shape and size of the DWCNTs in dispersion were observed by settling them on a silicon substrate, washed with acetone, and exposed to UV light for 20 minutes using an ozone cleaner (Meiwafosis, PC-450 plus) via dip-coating. The structures of DWCNTs were

• , the glass slide was washed with acetone and then irradiated with UV light for a duration of 1 hour via an ozone cleaner (Meiwafosis, PC-450 plus). Later, the substrate was coated using a bar coater (OSG SYSTEM PRODUCTS Co., LTD, Select-Roller L60, OSP-10 (bar groove pitch: 0.2 mm, depth: 24 μm)) with

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• )-5-Amino-1-benzyl-N'-(thiazol-2-yl)-1H-1,2,3-triazole-4-carboximidamide (3l). Compound 3l was obtained in 88% yield (117 mg) according to the general procedure B (NaOH: 20 mg, 0.5 mmol; amidine 1a: 77 mg, 0.5 mmol; azide 2c: 56 mg, 0.5 mmol; ethanol (2 mL)) as light yellow needles; mp 199–200 °C; 1H