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Search for "X-ray" in Full Text gives 1310 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.
Configuration–packing synergy enabling integrated crystalline-state RTP and amorphous-state TADF
Beilstein J. Org. Chem. 2026, 22, 224–236, doi:10.3762/bjoc.22.16
- Abstract A twisted D–π–A molecule, PI-Cz 1, was designed and synthesized using phthalimide as the acceptor, carbazole as the donor, and a phenylene bridge. Single-crystal X-ray diffraction revealed a markedly non-coplanar skeleton. Calculations based on the crystallographic geometry and frontier-orbital
- obtained through the method of slow solvent evaporation, which allows for the formation of high-quality crystals suitable for detailed structural analysis. The crystal structure of 1 was thoroughly characterized using single-crystal X-ray diffraction (CCDC 2492630). This technique provides precise three
- Figure 5b. This indicates that the specific molecular arrangement necessary for RTP was disrupted upon melting and subsequent rapid cooling, suggesting that the ordered structure in the solid phase is essential for the RTP phenomenon. In addition to the optical measurements, powder X-ray diffraction
Base-promoted deacylation of 2-acetyl-2,5-dihydrothiophenes and their oxygen-mediated hydroxylation
Beilstein J. Org. Chem. 2026, 22, 192–204, doi:10.3762/bjoc.22.13
- dihydrothiophenes 4a–f formed only deacetylated products 5a–f when the reaction was performed in an oxygen saturated ethanolic solution in the presence of sodium ethoxide. Experimental X-ray structure determination of 5g 5g: Crystal data for C17H18N2O2S (M = 314.40 g/mol): monoclinic, space group P−1, a = 9.3076 (5
Improved synthesis and physicochemical characterization of the selective serotonin 2A receptor agonist 25CN-NBOH
Beilstein J. Org. Chem. 2026, 22, 175–184, doi:10.3762/bjoc.22.11
- solid form Crystals of 1·HCl were grown from an ethanolic solution, and the crystal structure was determined by single-crystal X-ray diffraction (SCXRD, Figure 2). As seen in Figure 2a, 1·HCl adopts a twisted U shape and is involved in three hydrogen bonds. Therein, the ammonium N atom interacts with
- ). Notably, the crystal structure shows that there are no water molecules of crystallization present, nor are any other solvent molecules incorporated into the crystal packing. When comparing the diffractogram obtained by SCXRD (Figure 3, green) with that obtained by X-ray powder diffraction (XRPD) of 1·HCl
- (4 °C) overnight, the solids were collected by vacuum filtration and dried under high vacuum. In this way, approximately 60% of the starting material was recovered as a white solid. SCXRD Crystals of 1·HCl were grown by slow evaporation of a solution in EtOH at rt. A single crystal suitable for X-ray
Design and synthesis of an axially chiral platinum(II) complex and its CPL properties in PMMA matrix
Beilstein J. Org. Chem. 2026, 22, 143–150, doi:10.3762/bjoc.22.7
- spectroscopy, as well as high-resolution mass spectrometry (HRMS). Due to its low solubility, single crystals suitable for X-ray crystallographic analysis could not be obtained. Spectroscopic analysis and DFT calculations To elucidate the electronic structure of the platinum(II) complex, UV–vis absorption
Highly electrophilic, gem- and spiro-activated trichloromethylnitrocyclopropanes: synthesis and structure
Beilstein J. Org. Chem. 2026, 22, 123–130, doi:10.3762/bjoc.22.5
- group; X-ray; Introduction Trichloromethyl groups containing compounds are widely used in the organic synthesis of practically significant substances [1][2]. Based on them, methods have been developed for the synthesis of hard-to-access 5-aminoisoxazoles [3], α- and γ-heterosubstituted unsaturated
- bromine. The cyclization step from this conformation leads to trans-cyclopropanes. X-ray diffraction analysis data for compounds 2, 3, 9a, and 9b convincingly confirm the accepted structures, the position of cyclopropane protons, and the relative configurations of asymmetric atoms (Figures 2–5). It should
- be noted that the lengths of the C1–C2 (1.470(2)–1.491(4) Å) and C2–NO2 (1.472(4)–1.486(2) Å) bonds according to X-ray diffraction analysis in the molecules of nitrocyclopropanes 2, 3, 9a, and 9b turn out to be close to those in the molecules of nitrospirocyclopropanecarboxylates (C1–C2 (1.464(1
Reactivity umpolung of the cycloheptatriene core in hexa(methoxycarbonyl)cycloheptatriene
Beilstein J. Org. Chem. 2026, 22, 64–70, doi:10.3762/bjoc.22.2
- excellent yield, the structure being confirmed using single crystal X-ray analysis (CCDC 2495984). Bromination afforded a mixture of symmetric cycloheptatriene 4b and norcaradiene 6b, while intermediate cycloheptatriene 5b was not even observed. Iodination gave exclusively norcaradiene 6c. Previously
- norcaradiene product in the case of benzylation, unlike in the close analogues, is due to a steric repulsion. The structure of norcaradiene 6f was confirmed through single crystal X-ray analysis (CCDC 2495985). Allylation of anion 2 was followed by intramolecular [4 + 2]-cycloaddition in norcaradiene 6g to
- form caged tetracyclodecene 7g similar to that previously obtained from anion 1 [17] and also confirmed through single crystal X-ray analysis (CCDC 2496140). Using aryldiazonium salts as electrophiles afforded an even more complicated cascade process. Initial reactions with phenyl- or 4-substituted
Sustainable electrochemical synthesis of aliphatic nitro-NNO-azoxy compounds employing ammonium dinitramide and their in vitro evaluation as potential nitric oxide donors and fungicides
Beilstein J. Org. Chem. 2025, 21, 2739–2754, doi:10.3762/bjoc.21.211
- structure of 2c was confirmed by single-crystal X-ray analysis. The benzyl moiety was also tolerated, and the corresponding product 2e was obtained in 57% yield. 2,2-Dimethyl-5-nitro-5-nitroso-1,3-dioxane (1f) was successfully employed under the reaction conditions, leading to the formation of product 2f in
Competitive cyclization of ethyl trifluoroacetoacetate and methyl ketones with 1,3-diamino-2-propanol into hydrogenated oxazolo- and pyrimido-condensed pyridones
Beilstein J. Org. Chem. 2025, 21, 2716–2729, doi:10.3762/bjoc.21.209
- , causes the formation of two to four diastereomers, the structure of which has been determined with 1H, 19F, 13C, 2D 1H-13C HSQC/HMBC, 1H-1H COSY/NOESY NMR and X-ray diffraction analysis. Keywords: condensed pyridones; 1,3-diamino-2-propanol; ethyl 4,4,4-trifluoroacetoacetate; methyl ketones; three
- octahydropyrido[1,2-a]pyrimidinones 4a–d and hexahydrooxazolo[3,2-a]pyridones 5a–c was determined by IR, 1H, 19F, 13C NMR spectroscopy, two-dimensional NMR experiments, and X-ray diffraction analysis (XRD). The IR spectra of octahydropyrido[1,2-a]pyrimidinones 4a–d are characterized by reduced vibrational
Tandem hydrothiocyanation/cyclization of CF3-iminopropargyl alcohols with NaSCN in the presence of AcOH
Beilstein J. Org. Chem. 2025, 21, 2694–2702, doi:10.3762/bjoc.21.207
- and X-ray diffraction. Synthesis of isothiazolium thiocyanates 2 and 4-thiocyanato-2,5-dihydrofuran-2-amines 3. Typical procedure. A solution of iminopropargyl alcohol 1 (0.5 mmol, 1 equiv) in 3 mL of acetonitrile was quickly added to a mixture of sodium thiocyanate (1 mmol, 2 equiv) and 1 mL of
Synthesis of new tetra- and pentacyclic, methylenedioxy- and ethylenedioxy-substituted derivatives of the dibenzo[c,f][1,2]thiazepine ring system
Beilstein J. Org. Chem. 2025, 21, 2645–2656, doi:10.3762/bjoc.21.205
- step for the construction of the ring systems has been implemented by an intramolecular Friedel–Crafts cyclization. Altogether eight new ring systems are described here, five of them are also characterized by single-crystal X-ray diffraction. Keywords: acylation; bridged derivatives; cyclization
- , respectively (Scheme 2). The structure of compounds 20e and 21g was also confirmed by single-crystal X-ray diffraction (Figure 3). We demonstrated the potential utility of the synthesized new ring systems in the field of medicinal chemistry by the synthesis of tetracyclic analogues 20b and 21b of tianeptine
- of compound 23a was proven by single-crystal X-ray diffraction (Figure 4). Starting from compound 7, using methods we have previously developed for the synthesis of related compounds [2][3], we have now prepared new pentacyclic ring systems 25–27 (Scheme 5). Demethylation of 7 followed by alkylation
Thiazolidinones: novel insights from microwave synthesis, computational studies, and potentially bioactive hybrids
Beilstein J. Org. Chem. 2025, 21, 2618–2636, doi:10.3762/bjoc.21.203
- of the desired products. More decisively, a single crystal X-ray analysis was performed. Compounds 3n and 4n were provided with suitable crystals for X-ray structural analysis resulting in new crystal structures, Figure 4 and Figure S250 in Supporting Information File 1, respectively. The single
Total syntheses of highly oxidative Ryania diterpenoids facilitated by innovations in synthetic strategies
Beilstein J. Org. Chem. 2025, 21, 2553–2570, doi:10.3762/bjoc.21.198
- were ultimately elucidated in 1968 by Wiesner and co-workers using a combination of chemical degradation and X-ray crystallography [14]. Notably, in 2016, Inoue’s group at the University of Tokyo reconciled discrepancies through comparative analysis of experimental and natural product data, confirming
Ni-promoted reductive cyclization cascade enables a total synthesis of (+)-aglacin B
Beilstein J. Org. Chem. 2025, 21, 2548–2552, doi:10.3762/bjoc.21.197
- single crystals, and a corresponding X-ray diffraction analysis (inset in Scheme 3, selected H atoms have been omitted for clarity, and Table S3, Supporting Information File 1) unambiguously confirmed its precise structure with three continuous chiral centers. Conclusion In summary, the total synthesis
Rapid access to the core of malayamycin A by intramolecular dipolar cycloaddition
Beilstein J. Org. Chem. 2025, 21, 2542–2547, doi:10.3762/bjoc.21.196
- 19 was moderate because the anomeric carbon at C7 is associated with an acid-sensitive acetonide group. The structural determination of the major product 19a was accomplished by comprehensive NMR spectroscopy and further unambiguously confirmed by X-ray analysis (see Supporting Information File 1 for
- the Baeyer–Villiger reaction. Supporting Information Supporting Information File 14: Experimental procedures and compound characterization data. Acknowledgements We thank Dr. Min Shao (Shanghai University) for assistance of X-ray analysis. Funding Financial support from the National Natural Science
Palladium-catalyzed regioselective C1-selective nitration of carbazoles
Beilstein J. Org. Chem. 2025, 21, 2479–2488, doi:10.3762/bjoc.21.190
- thoroughly characterized by 1H and 13C NMR spectroscopy, HRMS, and single-crystal X-ray diffraction analysis (Figure 1). A range of solvents was subsequently screened; however, none provided an improvement over 1,4-dioxane for this transformation (Table 1, entries 2 and 3). In addition to AgNO3, other silver
- of our method. Key mechanistic studies. Optimization studies.a Supporting Information Supporting Information File 9: Experiment details, characterization data, copy of NMR spectra of synthesized compounds, and single-crystal X-ray diffraction data. Supporting Information File 10: CIF file for 2a
Insoluble methylene-bridged glycoluril dimers as sequestrants for dyes
Beilstein J. Org. Chem. 2025, 21, 2302–2314, doi:10.3762/bjoc.21.176
- along with comparator H2 as solid-state sequestrants for a panel of five dyes (methylene blue, methylene violet, acridine orange, rhodamine 6G, and methyl violet 6B). We find that catechol-walled H2 (OH substituents) is a superior sequestrant compared to G2W1–G2W4 (OMe substituents). X-ray crystal
- complete within 10 minutes. Keywords: cucurbituril; dyes; sequestrants; X-ray crystallography; Introduction The needs of a growing world population and the demands of modern life has resulted in the increased production of both known and new chemical substances including building materials, vitamins and
- (Figure 2) from water. Subsequently, we present the X-ray crystal structures of G2W1 and G2W3 which helps rationalize the results from the dye sequestration experiments. Finally, we present a detailed investigation into the methylene blue removal efficiency using H2 [39] (Figure 1) and the methylene
A chiral LC–MS strategy for stereochemical assignment of natural products sharing a 3-methylpent-4-en-2-ol moiety in their terminal structures
Beilstein J. Org. Chem. 2025, 21, 2243–2249, doi:10.3762/bjoc.21.171
- terminal position of various polyketide natural products such as a series of azaphilones including chaetomugilins [14], chaetoviridins [14][15], and some other α-pyrone polyketides [16][17][18] (Figure 1). Among the available strategies for elucidating the stereochemistry of MPO, X-ray crystallographic
- analysis, and computational methods have been widely used. For example, the absolute configuration of chaetomugilin B [19] was determined by X-ray crystallography, while that of capsulactone (1) was established through density functional theory (DFT)-based simulations of NMR chemical shifts and electronic
Thiadiazino-indole, thiadiazino-carbazole and benzothiadiazino-carbazole dioxides: synthesis, physicochemical and early ADME characterization of representatives of new tri-, tetra- and pentacyclic ring systems and their intermediates
Beilstein J. Org. Chem. 2025, 21, 2220–2233, doi:10.3762/bjoc.21.169
- variety of new tri-, tetra- and pentacyclic ring systems. The structural characterization of (E)- and (Z)-hydrazones was supported by 2D NMR techniques, while that of the target compounds by single-crystal X-ray measurements. The hydrazone intermediates and the new title compounds were subjected to a
- closed vial in which the reaction is carried out does not contain the necessary amount of oxygen. Structure determination of the products was also supported by single-crystal X-ray diffraction in the case of several representatives: 3b, 3d, 3e, 3g, 3h, (E)-7a, 7b, 7d, 7e, (E)-7f, (Z)-7h, 7i, and (E)-9a
- F254 and by UHPLC–MS on a Shimadzu LC-40 UHPLC equipment equipped with a quaternary pump, degasser, autosampler, column oven, diode array detector, and an LCMS-2020 quadrupole mass spectrometer. Single-crystal X-ray diffraction (SC-XRD) measurements were carried out on a Rigaku R-Axis Spider
A m-quaterphenyl probe for absolute configurational assignments of primary and secondary amines
Beilstein J. Org. Chem. 2025, 21, 2211–2219, doi:10.3762/bjoc.21.168
- configurations of both natural and synthetic compounds continues to pose a considerable challenge in the life and materials sciences [1]. While X-ray crystallography remains a reliable method for this purpose, the requirement for high-quality single crystals often limits its applicability. In recent years
- were recorded on a Jeol ECP400 spectrometer (400 MHz) and a Bruker AVANCE II spectrometer (400 MHz). All NMR spectroscopic data of CDCl3 solutions are reported in ppm (δ) downfield from TMS. UV and CD spectra were recorded on JASCO V-650 and JASCO J-820 spectrometers, respectively. X-ray single-crystal
- , and X-ray structure of (S)-2b. Supporting Information File 10: Crystallographic information file for compound 2b. Funding This work was partly supported by JSPS KAKENHI (Grant No. 17K05845, 24K08368).
The application of desymmetric enantioselective reduction of cyclic 1,3-dicarbonyl compounds in the total synthesis of terpenoid and alkaloid natural products
Beilstein J. Org. Chem. 2025, 21, 2085–2102, doi:10.3762/bjoc.21.164
- ,8R,11R based on the X-ray single-crystal analysis of its corresponding p-bromobenzoic ester (not shown). Total synthesis of (−)-conidiogenones B–F and (−)-12β-hydroxyconidiogenone C Conidiogenones are unique diterpenoids which possess a highly congested 6/5/5/5-fused framework with four all-carbon
Further elaboration of the stereodivergent approach to chaetominine-type alkaloids: synthesis of the reported structures of aspera chaetominines A and B and revised structure of aspera chaetominine B
Beilstein J. Org. Chem. 2025, 21, 2072–2081, doi:10.3762/bjoc.21.162
- the 13C NMR spectrum. We have succeeded in preparing a single crystal from the oxidation products. Interestingly, the X-ray diffraction analysis [66] showed that the single crystal contained two diastereomers (19/20) with the structures displayed in Scheme 2. Similarly, the DMDO oxidation of
Bioinspired total syntheses of natural products: a personal adventure
Beilstein J. Org. Chem. 2025, 21, 2048–2061, doi:10.3762/bjoc.21.160
- products capillosanol and chabranol, respectively [18]. Chabranol was identified to contain a new bridged skeleton through extensive NMR experiments. However, no single-crystal X-ray diffraction analysis was conducted, making the structural determinations not that solid. It showed moderate cytotoxicity
- the structure further, X-ray diffraction analysis of the derivative of bicycle 9 was obtained. This approach established the first total synthesis of chabranol in a concise way through the bioinspired Prins-triggered double cyclization strategy to rapidly construct the bicycle. Total syntheses of
- subsp. brachystachys, and discovered a series of complex natural products named sargalmides A–E [43] (Scheme 7a). To clearly elucidate the complex structures, Yue and co-workers used multiple methods including extensive spectroscopic analysis (NMR, IR and MS), X-ray crystallography, quantum-chemical
Switchable pathways of multicomponent heterocyclizations of 5-amino-1,2,4-triazoles with salicylaldehydes and pyruvic acid
Beilstein J. Org. Chem. 2025, 21, 2030–2035, doi:10.3762/bjoc.21.158
- control of the reaction, while oxygen-bridged heterocycles 4 are formed under thermodynamic control. The purity and structure of compounds 4 and 5 were established by elemental analysis, mass spectrometry, 1H and 13C NMR spectroscopy, and X-ray diffraction study (Figure 1). For example, the 1H NMR spectra
- acids. The reaction under ultrasonication at room temperature yields a mixture of the latter with 5-(2-hydroxyphenyl)-7-hydroxy-2-(methylthio)-4,5,6,7-tetrahydro[1,2,4]triazolo[1,5-a]pyrimidine-7-carboxylic acids. Molecular structure of compound 4c according to X-ray diffraction data. Thermal ellipsoids
α-Ketoglutaric acid in Ugi reactions and Ugi/aza-Wittig tandem reactions
Beilstein J. Org. Chem. 2025, 21, 2021–2029, doi:10.3762/bjoc.21.157
- and 13C NMR spectroscopy, and by X-ray diffraction study (see Experimental part). The 1H NMR spectra of compounds 5 are characterized by the following signals: a broad carboxyl group proton singlet at 12.10–12.17 ppm, an NH group proton singlet at 7.74–8.02 ppm, an aromatic protons multiplet at 6.52
- shift of the signal in the 198 ppm region, corresponding to the carbonyl carbon of compounds 8, to a stronger field in quinoxalinones 9, where cyclization of the keto group has occurred. The structure of quinoxalinones of type 9 was finally assigned based on X-ray diffraction analysis made for 3-(4-(2
- biologically active quinoxalinone derivatives. Molecular structure of 3-(4-(2-(tert-butylamino)-1-(4-methoxyphenyl)-2-oxoethyl)-5,7-dimethyl-3-oxo-3,4-dihydroquinoxalin-2-yl)propanoic acid (9e) according to X-ray diffraction data. Known multicomponent reactions of KGA. Ugi reaction involving KGA. Tandem Ugi
Aryl iodane-induced cascade arylation–1,2-silyl shift–heterocyclization of propargylsilanes under copper catalysis
Beilstein J. Org. Chem. 2025, 21, 1984–1994, doi:10.3762/bjoc.21.154
- aminopentynes 16a–c underwent allylic rearrangement, affording tetrahydropyridines 9 (Scheme 6). The tetrahydropyridine core was confirmed unambiguously by X-ray structure analysis of dinitrobenzamide 9c. More electron-rich acylamides reacted faster and gave less side-products, compared to more electron-poor
- . Conditions screening for copper-catalyzed arylation–cyclization of propargylsilane 7d. Supporting Information Supporting Information File 4: Experimental data, synthesis procedures, 1H and 13C NMR spectra, and X-ray data. Funding This work was supported by the Latvian Council of Science Grant LZP-2023/1
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