Orthogonal photoswitching of heterobivalent azobenzene glycoclusters: the effect of glycoligand orientation in bacterial adhesion

• Leon M. Friedrich and
• Thisbe K. Lindhorst

Beilstein J. Org. Chem. 2025, 21, 736–748, doi:10.3762/bjoc.21.57

• and excellent yield of 94% (Scheme 1). A chemoselective deprotection of the mannosyl thioacetate 7 to yield the glycosyl thiol 8 was achieved using 0.95 equivalents of sodium carbonate. The crude product was in turn submitted to a Buchwald–Hartwig–Migita cross-coupling reaction [33] with the

• antenna 17 in 73% over two steps. Subsequent deacetylation quantitatively yielded 6αMan 4 (Scheme 2A). Finally, the third required glycoazobenzene antenna, the 3-(α-ᴅ-mannopyranosyl)mannoside 3αMan 5, was directly obtained from the known mannosyloxyazobenzene mannoside 18 [24] after Zemplén deprotection

Formaldehyde surrogates in multicomponent reactions

• Cecilia I. Attorresi,
• Javier A. Ramírez and
• Bernhard Westermann

Beilstein J. Org. Chem. 2025, 21, 564–595, doi:10.3762/bjoc.21.45

• peptide carbonyl group. Both moieties result from the glyoxylate compound (Scheme 43). There are many examples in which the ester moiety opens the possibility of a further intramolecular cyclization with a nucleophile (for example, a protected amine in an Ugi/deprotection/cyclization sequence [98][99][100

Synthesis of N-acetyl diazocine derivatives via cross-coupling reaction

• Thomas Brandt,
• Pascal Lentes,
• Jeremy Rudtke,
• Michael Hösgen,
• Christian Näther and
• Rainer Herges

Beilstein J. Org. Chem. 2025, 21, 490–499, doi:10.3762/bjoc.21.36

• . Using diphenylamine as a more electron-rich amine resulted in the formation of diphenylamino-substituted N-acetyl diazocine 20 in a significantly lower yield of 25% starting from the bromide 2 and 47% starting from the iodo precursor 3 (Table 5). Deprotection of carbamate 19 with trifluoroacetic acid

• the switching behavior while weak +M substituents like bromine and fluorine as well as electron-poor heteroaromatic systems lead to increased thermal half-lives. An amino-substituted derivative 21 was obtained via Buchwald–Hartwig coupling with Boc-carbamate and subsequent deprotection. Amino

• of amino-N-acetyl diazocine by deprotection of the carbamate. Reaction conditions for the attempted Ullmann-type reaction with sodium azide. Reaction conditions for the palladium-catalyzed introduction of a nitrile functionality. Quantum yields of N-acetyl diazocine 1 in organic and aqueous media

The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

• Rituparna Das and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

• glycoside 8 (Scheme 1). Glycosylation is considered as the most crucial step in any oligosaccharide synthesis, although it may be argued that, building block preparations or final deprotection steps remain equally demanding. The main challenge of glycosylation lies in the structural complexity of the

• , however, are used synonymously owing to their same participating property and the same Zemplén deprotection strategy [87]. A recent study showed the use of modified Zemplén conditions to synthesise deacetylated methyl β-glycopyranosides directly from per-O-acetylated α-glycosyl halides using a

• leading to lower amounts of orthoester side products. However, the removal of the pivalate group requires much harsher reaction conditions owing to its steric bulk. Hence, there has been much study to derivatise the pivalolyl ester necessitating milder deprotection conditions. Crimmins et al. in 1998

Cu(OTf)₂-catalyzed multicomponent reactions

• Sara Colombo,
• Camilla Loro,
• Egle M. Beccalli,
• Gianluigi Broggini and
• Marta Papis

Beilstein J. Org. Chem. 2025, 21, 122–145, doi:10.3762/bjoc.21.7

• , followed by silyl deprotection and azide cycloaddition resulting in the triazole product. The presence of Cu(OTf)2 as the catalyst, sodium ascorbate as a mild reductant and TBAF to deprotect the alkyne moiety are crucial in the cycloaddition step. Conclusion In this review the developments on the

Recent advances in organocatalytic atroposelective reactions

• Henrich Szabados and
• Radovan Šebesta

Beilstein J. Org. Chem. 2025, 21, 55–121, doi:10.3762/bjoc.21.6

• authors prepared a wide scope of axially chiral products 186 in high yields with excellent enantiomeric purity. The reaction allows lowering of the catalyst loading to 2 mol %. Deprotection of the amino group enabled subsequent transformations, such as a reaction with isocyanate from which a new potential

Synthesis of acenaphthylene-fused heteroarenes and polyoxygenated benzo[j]fluoranthenes via a Pd-catalyzed Suzuki–Miyaura/C–H arylation cascade

• Merve Yence,
• Dilgam Ahmadli,
• Damla Surmeli,
• Umut Mert Karacaoğlu,
• Sujit Pal and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2024, 20, 3290–3298, doi:10.3762/bjoc.20.273

• challenging, if not impossible. In order to overcome this problem, we opted to synthesize benzo[j]fluoranthene analogues with differentially protected oxygens so that specific positions can be functionalized further if needed after selective deprotection. To this end, first we accomplished an efficient

• via the deprotection of the -OTIPS silyl ether under the reaction conditions. A final MOM-deprotection under acidic conditions led to the formation of the desired benzo[j]fluoranthene 28 in 82% yield. Conclusion In conclusion, we have demonstrated the successful synthesis of heterocyclic fluoranthene

Non-covalent organocatalyzed enantioselective cyclization reactions of α,β-unsaturated imines

• Sergio Torres-Oya and
• Mercedes Zurro

Beilstein J. Org. Chem. 2024, 20, 3221–3255, doi:10.3762/bjoc.20.268

• ). Firstly, hydrogenation with palladium on carbon led to the formation of 55 in a good yield. Secondly, an alkylation of the NH of the indole followed by intramolecular cyclization led to tetracyclic derivative 56 in an 80% yield. Next, a deprotection of the azo nitrogen atom led to derivative 57 in a 92

• formed N–N axis conducting to the origin of diastereoselectivity in the reaction. The treatment of 79 with base afforded the pyrrolinone 80 in 82% yield. On the other hand, the deprotection of derivative 78f led to the hydrazine 81 in an excellent yield. All the derivatizations occurred with the

Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

• Lucía Campos-Prieto,
• Aitor García-Rey,
• Eddy Sotelo and
• Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

• synthesizing diverse scaffolds [6]. Furthermore, the Ugi reaction exhibits versatility in forming both fused and unfused heterocyclic compounds, involving 4-, 5-, 6-, and 7-membered rings [17]. This capability is exploited by various approaches, including the Ugi–Deprotection–Cyclization strategy (UDC) and

• ] developed artificial, ‘natural-like’ polyphenols, using the Ugi reaction, since it leads to mixed polyphenol–peptidomimetic structures (Scheme 4). The procedure involved an Ugi reaction using phenolic building blocks protected as allyl ethers, followed by deprotection, acetylation, and high-yielding

• years, the Ugi reaction has emerged as a highly considered reaction due to its mild conditions, broad applications, and product diversity. It enables the selective assembly of precursors, facilitating various post-reaction transformations such as deprotection cyclization, 1,3-dipolar cycloaddition, and

N-Glycosides of indigo, indirubin, and isoindigo: blue, red, and yellow sugars and their cancerostatic activity

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 2840–2869, doi:10.3762/bjoc.20.240

• steric demand of the isatin moiety and the α-anomeric form would result in a disfavorable 1,3-diaxial interaction between the isatin and the formyl group located at carbons C-1 and C-3, respectively. Deprotection with ammonia afforded the deprotected glucoside β-24a in anomerically pure form. Following

• of the 3-fluoroaniline moiety, presumably due to steric reasons. Deprotection of the isatin-N-glucosides 23b–f and xyloside 23g proceeded uneventfully and afforded products 24b–g in 50–85% yields. All products were isolated as the β-anomers. In our group, we also studied the synthesis of indirubin-N

• indirubin-N-glycosides Thioindirubin-N-glycososides In our group, we studied the reaction of isatin-N-glycoside 16a with thiaindan-3-one which afforded red colored thioindirubin-N-rhamnoside β-32a in very good yield and with excellent Z-selectivity (Scheme 20) [26]. Deprotection of β-32a afforded β-33a in

Asymmetric organocatalytic synthesis of chiral homoallylic amines

• Nikolay S. Kondratyev and
• Andrei V. Malkov

Beilstein J. Org. Chem. 2024, 20, 2349–2377, doi:10.3762/bjoc.20.201

• synthesis, the deprotected derivatives such as 69 are desired for the synthesis of natural products. Therefore, an easy-to-perform two-step deprotection procedure was developed that is based on methylation of the phenolic hydroxy group with an excess of MeI in acetone at rt (68), followed by oxidative

• -morpholinyl amido and benzophenone imino groups with LiAlH4 and NaBH4 afforded the corresponding syn-2-benzyl-1,3-amino alcohol 134 in 83% yield. In the case of the dimethylamide derivative, deprotection of benzophenone imine 128 with NH2OH·HCl followed by the LiAlH4 reduction gave rise to chiral syn-2-benzyl

• N-(2-hydroxy)phenylimines with allyltributyltin. Scope of the reaction [37]. The two-step N-(2-hydroxy)phenyl group deprotection procedure [37]. Low-temperature (−40 °C) NMR experiments evidencing the reversible formation of the active COBI–imine chiral complex [37]. Highly chemoselective and

Metal-free double azide addition to strained alkynes of an octadehydrodibenzo[12]annulene derivative with electron-withdrawing substituents

• Naoki Takeda,
• Shuichi Akasaka,
• Susumu Kawauchi and
• Tsuyoshi Michinobu

Beilstein J. Org. Chem. 2024, 20, 2234–2241, doi:10.3762/bjoc.20.191

• %. Silyl deprotection with (n-C4H9)4NF in THF followed by acetylenic oxidative dimerization under Hay conditions produced the desired DBA 5 in 12.7% yield. It should be noted that a thermodynamically more stable trimeric macrocycle was also formed in 17.7%, but it was not isolated and purified because it

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• 11 are formed via Hantzsch's thiazole synthesis. After acidic deprotection to thiazolylhydrazines 12, these react with enolates of 2,4-diketoesters, which are intermediaries prepared in a separate reaction vessel, yielding the corresponding (thiazol-2-yl)pyrazoles 8. However, hydrazines are not

• (hetero)aryl iodides gives rise to 3-arylalkynyl acetals 142. Since 3-arylpropynals are sensitive to oligo- and polymerization, it proved useful to perform acetal deprotection and cyclization with hydrazine hydrate in a one-pot procedure to give 3-substituted pyrazoles 141 (Scheme 48) [151]. Given that

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• -pot two-step procedure, combining the GBB-3CR and an acid-assisted deprotection reaction, to get a library of imidazo[2,1-f][1,2,4]triazin-4(3H)-ones 46, characterized by a flat heterocyclic ring system displaying the essential triad. Guanine derivatives are typically synthesized through a sequential

• compared to traditional heating for the outcome of the reaction (60% yield vs 49%). A consistent library of 22 compounds was prepared, in yields ranging from 21 to 75%, and the GBB adducts were finally deprotected under acid conditions. When TFA was used partial deprotection to 46 was achieved, while the

• limited to methanol due to solubility problems, and HClO4 was selected because other Brønsted acids caused amine deprotection. The GBB adducts 58 could be further elaborated through a Buchwald intramolecular nucleophilic substitution/cyclization, as it will be described in section 3.3. 3 Novel scaffolds

Harnessing unprotected deactivated amines and arylglyoxals in the Ugi reaction for the synthesis of fused complex nitrogen heterocycles

• Javier Gómez-Ayuso,
• Pablo Pertejo,
• Tomás Hermosilla,
• Israel Carreira-Barral,
• Roberto Quesada and
• María García-Valverde

Beilstein J. Org. Chem. 2024, 20, 1758–1766, doi:10.3762/bjoc.20.154

• [11]. Different strategies have been developed to avoid these competitive reactions, the most common ones being the use of protecting groups (Ugi/deprotection/cyclization strategy) [12][13][14] or of surrogates of amines [15]. However, direct incorporation of the second amine without derivatization is

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

• (110a and 110b, respectively). These protected compounds were subjected to alkynylation using 4-THPO-1-butyne on the carbonyl group at C-17, yielding steroids 111. Subsequent catalytic hydrogenation of the triple bonds, followed by deprotection of the alcohols from their THP ether groups and oxidation

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• Suzuki–Miyaura coupling with boronic ester 53 and O-acetylation furnished 54. The dienophile component, morachalcone A (44), was synthesized from phenol 55 in four steps including O-prenylation and subsequent Claisen rearrangement, aldol condensation with 56, and deprotection. The key chemo-enzymatic

• conversions, in situ generation of 48 by deprotection of 54, followed by treatment with 44 in the presence of purified Diels–Alderase MaDA, facilitated an endo-selective DA reaction and led to the concise total synthesis of chalcomoracin (3) in 51% yield. To achieve the systematic total synthesis of the

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• of toxic agents such as MeI, TFA, or sodium cyanoborohydride can be harmful to both health and environment. Additionally, the need for constant protection and deprotection steps is time-consuming and results in low atomic economy, while also increasing the use of solvents, energy, and chemicals

Photoswitchable glycoligands targeting Pseudomonas aeruginosa LecA

• Yu Fan,
• Ahmed El Rhaz,
• Stéphane Maisonneuve,
• Emilie Gillon,
• Maha Fatthalla,
• Franck Le Bideau,
• Guillaume Laurent,
• Samir Messaoudi,
• Anne Imberty and
• Juan Xie

Beilstein J. Org. Chem. 2024, 20, 1486–1496, doi:10.3762/bjoc.20.132

• commercially available p,p’-dihydroxyazobenzene (6), by using our recently developed DMC (2-chloro-1,3-dimethylimidazolinium chloride)-mediated one-pot glycosylation method in water [28], followed by O-alkylation of the remaining hydroxy group with BrCH2CH2NHBoc and acidic deprotection (Scheme 1). Three

• β-O-galactoside [36]. The same strategy was applied for the m,m’-substituted derivative 2, starting from the glycosylation of m,m’-dihydroxyazobenzene (9) [37], followed by O-alkylation and Boc deprotection to afford the galacoside 2 in 19% total yield. Unfortunately, all our attempts to synthesize

• , neutralized with HCl (1 M), and extracted with EtOAc (3 times). The organic phase was washed with brine, dried over anhydrous Na2SO4, evaporated under reduced pressure in vacuo, and purified by CombiFlash Rf+ (CH2Cl2/MeOH 15:1). General procedure II for the Boc deprotection: To a solution of the Boc-protected

The Ugi4CR as effective tool to access promising anticancer isatin-based α-acetamide carboxamide oxindole hybrids

• Carolina S. Marques,
• Aday González-Bakker and
• José M. Padrón

Beilstein J. Org. Chem. 2024, 20, 1213–1220, doi:10.3762/bjoc.20.104

• -acetamide carboxamide isatin hybrids 8 easy accessed via deprotection reaction on the Ugi-adducts 5 and 7. TFA: trifluoroacetic acid. Supporting Information Supporting Information File 56: Experimental procedures, analytical data, NMR spectra and biological assays. Funding C. S. M. thanks the Norma

Bismuth(III) triflate: an economical and environmentally friendly catalyst for the Nazarov reaction

• Manoel T. Rodrigues Jr.,
• Aline S. B. de Oliveira,
• Ralph C. Gomes,
• Amanda Soares Hirata,
• Lucas A. Zeoly,
• Hugo Santos,
• João Arantes,
• Catarina Sofia Mateus Reis-Silva,
• João Agostinho Machado-Neto,
• Leticia Veras Costa-Lotufo and
• Fernando Coelho

Beilstein J. Org. Chem. 2024, 20, 1167–1178, doi:10.3762/bjoc.20.99

• synthesis has been reported for several transformations, such as epoxide opening [56], ketal formation and deprotection [57][58], Mannich reaction [59], intramolecular Sakurai cyclization [60], alcohol oxidation [61], aromatic hydrocarbon nitration [62], imine allylation [63], Knoevenagel condensation [64

Synthesis of 1,4-azaphosphinine nucleosides and evaluation as inhibitors of human cytidine deaminase and APOBEC3A

• Maksim V. Kvach,
• Stefan Harjes,
• Harikrishnan M. Kurup,
• Geoffrey B. Jameson,
• Elena Harjes and
• Vyacheslav V. Filichev

Beilstein J. Org. Chem. 2024, 20, 1088–1098, doi:10.3762/bjoc.20.96

• the basic medium required to remove the toluoyl groups in the next step. This unfortunate instability of nucleoside 19 in basic medium repelled us from the idea of introducing the charge-neutral compound Vb into DNA because basic conditions are used for DNA cleavage and deprotection. To obtain Vb for

Novel analogues of a nonnucleoside SARS-CoV-2 RdRp inhibitor as potential antivirotics

• Luca Julianna Tóth,
• Kateřina Krejčová,
• Milan Dejmek,
• Eva Žilecká,
• Blanka Klepetářová,
• Lenka Poštová Slavětínská,
• Evžen Bouřa and
• Radim Nencka

Beilstein J. Org. Chem. 2024, 20, 1029–1036, doi:10.3762/bjoc.20.91

• ], and thus avoiding the use of base, leading to the desired intermediate 14 in good yield. Compound 14 was then coupled with ʟ-tyrosine methyl ester followed by deprotection of the amino acid carboxyl group by LiOH⋅H2O. As in the previous base-mediated saponification, here we also received a product of

Enantioselective synthesis of β-aryl-γ-lactam derivatives via Heck–Matsuda desymmetrization of N-protected 2,5-dihydro-1H-pyrroles

• Arnaldo G. de Oliveira Jr.,
• Martí F. Wang,
• Rafaela C. Carmona,
• Danilo M. Lustosa,
• Sergei A. Gorbatov and
• Carlos R. D. Correia

Beilstein J. Org. Chem. 2024, 20, 940–949, doi:10.3762/bjoc.20.84

• were then submitted to deprotection protocols as described in the literature [20][21]. However, the removal of the tosyl group of pyrroline 1b proved to be a challenging task. After several unsuccessful attempts to remove the tosyl group, we decided to evaluate the (p-nitrophenyl)sulfonyl (Ns) and (o

• for the treatment of muscle spasticity from spinal cord injury and multiple sclerosis [16]. Among all the sulfonyl-protecting groups used in this work, the removal of the N-nosyl group required milder conditions [22]. Deprotection of N-nosylated 4dd and 4de with thiophenol and K2CO3 at room