Search results

Search for "molecular structure" in Full Text gives 384 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Thiazolidinones: novel insights from microwave synthesis, computational studies, and potentially bioactive hybrids

  • Luan A. Martinho,
  • Victor H. J. G. Praciano,
  • Guilherme D. R. Matos,
  • Claudia C. Gatto and
  • Carlos Kleber Z. Andrade

Beilstein J. Org. Chem. 2025, 21, 2618–2636, doi:10.3762/bjoc.21.203

Graphical Abstract
  • , thus hindering an ICT process (see Supporting Information File 1, Scheme S2). The molecular structure of compounds 3n and 4n can be separated in three blocks: a donor region, a π bridge and an acceptor region (Figure 9) common to molecules with intramolecular charge transfer (ICT) states. M06-2X/def2
  • : a) 1H NMR spectra (600 MHz, DMSO-d6) with expansions, and b) 13C NMR spectra (151 MHz, DMSO-d6) with expansions. a) Molecular structure of 3n with crystallographic labeling (50% probability displacement). b) Perspective views of intermolecular hydrogen bonds (dotted lines) of 3n. (‘) symmetry
PDF
Album
Supp Info
Full Research Paper
Published 28 Nov 2025

Total syntheses of highly oxidative Ryania diterpenoids facilitated by innovations in synthetic strategies

  • Zhi-Qi Cao,
  • Jin-Bao Qiao and
  • Yu-Ming Zhao

Beilstein J. Org. Chem. 2025, 21, 2553–2570, doi:10.3762/bjoc.21.198

Graphical Abstract
  • . This field serves not only as a vital tool for molecular structure validation and the discovery of new reaction mechanisms but also as a fundamental driving force behind advances in related disciplines such as pharmaceutical science. Throughout this endeavor, innovations in methods and strategies
PDF
Album
Review
Published 19 Nov 2025

Synthetic study toward vibralactone

  • Liang Shi,
  • Jiayi Song,
  • Yiqing Li,
  • Jia-Chen Li,
  • Shuqi Li,
  • Li Ren,
  • Zhi-Yun Liu and
  • Hong-Dong Hao

Beilstein J. Org. Chem. 2025, 21, 2376–2382, doi:10.3762/bjoc.21.182

Graphical Abstract
  • several potent pancreatic lipase inhibitors with nanomolar IC50 values [24], further supporting vibralactone as a promising lead compound warranting further investigation. Although vibralactone (6) is a relatively small natural product, its molecular structure features a unique 4/5-fused bicyclic β
PDF
Album
Supp Info
Letter
Published 04 Nov 2025

Conformational effects on iodide binding: a comparative study of flexible and rigid carbazole macrocyclic analogs

  • Guang-Wei Zhang,
  • Yong Zhang,
  • Le Shi,
  • Chuang Gao,
  • Hong-Yu Li and
  • Lei Xue

Beilstein J. Org. Chem. 2025, 21, 2369–2375, doi:10.3762/bjoc.21.181

Graphical Abstract
  • successfully obtained. This indirectly confirmed the molecular structure of WDG [22]. The NH protons of the carbazole moiety in PBG and WDG were observed as singlets at δ 7.9706 and δ 7.8624, respectively, in their 1H NMR spectra (Figure 1a and 1b). In order to study the role and mechanism of anion recognition
PDF
Album
Supp Info
Full Research Paper
Published 03 Nov 2025

Solar thermal fuels: azobenzene as a cyclic photon–heat transduction platform

  • Jie Yan,
  • Shaodong Sun,
  • Minghao Wang and
  • Si Wu

Beilstein J. Org. Chem. 2025, 21, 2036–2047, doi:10.3762/bjoc.21.159

Graphical Abstract
  • Azobenzene small-molecule derivatives can be systematically categorized based on molecular structure into monoazobenzene derivatives [61][62][63][64][65][66][67][68][69], multiazobenzene derivatives [70][71][72][73], heteroaromatic azobenzene derivatives [74][75][76][77][78][79][80][81], and macrocyclic
  • Society. This content is not subject to CC BY 4.0. (e) Molecular structure of the trisazobenzenophane. Figure 6e was adapted with permission from [82] Copyright © 2013 American Chemical Society. This content is not subject to CC BY 4.0. (a) Deicing test of charged solar thermal fuels under green light
PDF
Album
Perspective
Published 08 Oct 2025

Switchable pathways of multicomponent heterocyclizations of 5-amino-1,2,4-triazoles with salicylaldehydes and pyruvic acid

  • Yana I. Sakhno,
  • Oleksander V. Buravov,
  • Kostyantyn Yu. Yurkov,
  • Anastasia Yu. Andryushchenko,
  • Svitlana V. Shishkina and
  • Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2030–2035, doi:10.3762/bjoc.21.158

Graphical Abstract
  • acids. The reaction under ultrasonication at room temperature yields a mixture of the latter with 5-(2-hydroxyphenyl)-7-hydroxy-2-(methylthio)-4,5,6,7-tetrahydro[1,2,4]triazolo[1,5-a]pyrimidine-7-carboxylic acids. Molecular structure of compound 4c according to X-ray diffraction data. Thermal ellipsoids
PDF
Album
Supp Info
Full Research Paper
Published 08 Oct 2025

α-Ketoglutaric acid in Ugi reactions and Ugi/aza-Wittig tandem reactions

  • Vladyslav O. Honcharov,
  • Yana I. Sakhno,
  • Olena H. Shvets,
  • Vyacheslav E. Saraev,
  • Svitlana V. Shishkina,
  • Tetyana V. Shcherbakova and
  • Valentyn A. Chebanov

Beilstein J. Org. Chem. 2025, 21, 2021–2029, doi:10.3762/bjoc.21.157

Graphical Abstract
  • biologically active quinoxalinone derivatives. Molecular structure of 3-(4-(2-(tert-butylamino)-1-(4-methoxyphenyl)-2-oxoethyl)-5,7-dimethyl-3-oxo-3,4-dihydroquinoxalin-2-yl)propanoic acid (9e) according to X-ray diffraction data. Known multicomponent reactions of KGA. Ugi reaction involving KGA. Tandem Ugi
PDF
Album
Supp Info
Full Research Paper
Published 07 Oct 2025

Photoswitches beyond azobenzene: a beginner’s guide

  • Michela Marcon,
  • Christoph Haag and
  • Burkhard König

Beilstein J. Org. Chem. 2025, 21, 1808–1853, doi:10.3762/bjoc.21.143

Graphical Abstract
PDF
Album
Review
Published 08 Sep 2025

Research progress on calixarene/pillararene-based controlled drug release systems

  • Liu-Huan Yi,
  • Jian Qin,
  • Si-Ran Lu,
  • Liu-Pan Yang,
  • Li-Li Wang and
  • Huan Yao

Beilstein J. Org. Chem. 2025, 21, 1757–1785, doi:10.3762/bjoc.21.139

Graphical Abstract
  • nanoparticles [62]. Their morphologies mainly depend on molecular structure, concentration, and environmental properties. The cylindrical geometry of vesicles [63] promotes the arrangement of amphiphilic molecules with their hydrophobic tails pointing inward and hydrophilic heads pointing outward, forming a
PDF
Album
Review
Published 03 Sep 2025

3,3'-Linked BINOL macrocycles: optimized synthesis of crown ethers featuring one or two BINOL units

  • Somayyeh Kheirjou,
  • Jan Riebe,
  • Maike Thiele,
  • Christoph Wölper and
  • Jochen Niemeyer

Beilstein J. Org. Chem. 2025, 21, 1719–1729, doi:10.3762/bjoc.21.134

Graphical Abstract
  • bistosylates 85/6/7/8 (1.0 equiv), Cs2CO3 (2.0 equiv), CH3CN, 80 °C. Molecular structure of macrocycle (R)-Me-M16 in the solid state (hydrogen atoms are omitted for clarity and thermal ellipsoids are set at the 60% probability level). The ethylene glycol chain is partially disordered, only one component is
PDF
Album
Supp Info
Full Research Paper
Published 28 Aug 2025

Structural analysis of stereoselective galactose pyruvylation toward the synthesis of bacterial capsular polysaccharides

  • Tsun-Yi Chiang,
  • Mei-Huei Lin,
  • Chun-Wei Chang,
  • Jinq-Chyi Lee and
  • Cheng-Chung Wang

Beilstein J. Org. Chem. 2025, 21, 1671–1677, doi:10.3762/bjoc.21.131

Graphical Abstract
  • ][23][24][25][26][27]. However, these chemical shifts can vary depending on the molecular structure, making it difficult to characterize the isomers across different systems. To address this, the current study aimed to develop a method for installing pyruvate ketals with precise diastereochemistry and
PDF
Album
Supp Info
Letter
Published 21 Aug 2025

Synthesis of optically active folded cyclic dimers and trimers

  • Ena Kumamoto,
  • Kana Ogawa,
  • Kazunori Okamoto and
  • Yasuhiro Morisaki

Beilstein J. Org. Chem. 2025, 21, 1603–1612, doi:10.3762/bjoc.21.124

Graphical Abstract
  • ]paracyclophanes via Wurtz-type intramolecular cyclization [3]. [2.2]Paracyclophane has a molecular structure in which two benzene rings are stacked face-to-face with ethylene chains at the para positions. Various studies have been conducted on their reactivities and physical properties derived from their unique
  • molecular structure with stacked π-electron clouds [1][4][5][6]. The distance between benzene rings in [2.2]paracyclophane is extremely short (2.8–3.1Å), and thus the rotational motion of benzene rings is completely suppressed; therefore, planar chirality without chiral centers [7] appears by introducing
PDF
Album
Supp Info
Full Research Paper
Published 11 Aug 2025

Thermodynamic equilibrium between locally excited and charge transfer states in perylene–phenothiazine dyads

  • Issei Fukunaga,
  • Shunsuke Kobashi,
  • Yuki Nagai,
  • Hiroki Horita,
  • Hiromitsu Maeda and
  • Yoichi Kobayashi

Beilstein J. Org. Chem. 2025, 21, 1577–1586, doi:10.3762/bjoc.21.121

Graphical Abstract
  • phenothiazine derivative, 12-phenyl-12H-benzo[a]phenothiazine, in toluene at room temperature has been estimated to be 28 ps (with an additional minor 0.7 ps component attributed to small-scale structural changes) [17]. It is also noted that the relaxation dynamics depend on the molecular structure and the
PDF
Album
Supp Info
Full Research Paper
Published 05 Aug 2025

pH-Controlled isomerization kinetics of ortho-disubstituted benzamidines: E/Z isomerism and axial chirality

  • Ryota Kimura,
  • Satoshi Ichikawa and
  • Akira Katsuyama

Beilstein J. Org. Chem. 2025, 21, 1568–1576, doi:10.3762/bjoc.21.120

Graphical Abstract
  • made with little effect on the molecular structure and are widely used in areas such as carbon materials. If the three-dimensional structure of molecules can be manipulated by various external stimuli through such modifications, we can expect to develop useful molecular switches that can be applied to
PDF
Album
Supp Info
Letter
Published 04 Aug 2025

Azide–alkyne cycloaddition (click) reaction in biomass-derived solvent CyreneTM under one-pot conditions

  • Zoltán Medgyesi and
  • László T. Mika

Beilstein J. Org. Chem. 2025, 21, 1544–1551, doi:10.3762/bjoc.21.117

Graphical Abstract
  • –carbon double bond in a certain molecular structure could allow for efficient subsequent functionalization via, for example, an addition reaction, opening possibilities for building even more complex molecular skeletons involving 1,2,3-triazole units. Using allyl bromide in the reaction sequence results
PDF
Album
Supp Info
Full Research Paper
Published 30 Jul 2025

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

  • Grzegorz Mlostoń,
  • Małgorzata Celeda,
  • Marcin Palusiak,
  • Heinz Heimgartner,
  • Marta Denel-Bobrowska and
  • Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

Graphical Abstract
  • structure of the N-insertion product (thioaminal) 9i. Atoms are represented by thermal ellipsoids (50%). For graphics with atoms labelling see Figure S22(a) (Supporting Information File 1); (b) molecular structure of the S-insertion product (dithioacetal) 10i. Atoms are represented by thermal ellipsoids (50
  • ), 4.02 (s, 3H, NMe); 13C NMR (CDCl3) δ 15.3 (SCH3), 23.5, 23.6, 25.3, 31.1, 33.9, 34.0 (6 signals for 10CH2), 70.8 (2Cq), 75.9 (S‒C‒S), 151.3 (N=C‒S), 215.7 (C=O); Anal calcd for C17H26N4OS2 (366.54): C, 55.70; H, 7.15; N, 15.28; S, 17.50; found: C, 55.55; H, 7.04; N, 15.15; S, 17.68. (a) Molecular
PDF
Album
Supp Info
Full Research Paper
Published 23 Jul 2025

Recent total synthesis of natural products leveraging a strategy of enamide cyclization

  • Chun-Yu Mi,
  • Jia-Yuan Zhai and
  • Xiao-Ming Zhang

Beilstein J. Org. Chem. 2025, 21, 999–1009, doi:10.3762/bjoc.21.81

Graphical Abstract
  • notable example is (−)-cephalocyclidin A, a cytotoxic pentacyclic cephalotaxus alkaloid [33][34]. Although the molecular structure contains a benzo-bridge ring system, disconnection of this bridge reveals a critical tricyclic N-heterocycle. To efficiently synthesize this tricycle, polycyclization of
PDF
Album
Review
Published 22 May 2025

On the photoluminescence in triarylmethyl-centered mono-, di-, and multiradicals

  • Daniel Straub,
  • Markus Gross,
  • Mona E. Arnold,
  • Julia Zolg and
  • Alexander J. C. Kuehne

Beilstein J. Org. Chem. 2025, 21, 964–998, doi:10.3762/bjoc.21.80

Graphical Abstract
PDF
Album
Supp Info
Review
Published 21 May 2025

4-(1-Methylamino)ethylidene-1,5-disubstituted pyrrolidine-2,3-diones: synthesis, anti-inflammatory effect and in silico approaches

  • Nguyen Tran Nguyen,
  • Vo Viet Dai,
  • Luc Van Meervelt,
  • Do Thi Thao and
  • Nguyen Minh Thong

Beilstein J. Org. Chem. 2025, 21, 817–829, doi:10.3762/bjoc.21.65

Graphical Abstract
  • -disubstituted pyrrolidine-2,3-diones were successfully synthesized via reversible transimination reaction. The structure of all compounds was evaluated using nuclear magnetic resonance (NMR) spectroscopy and, especially, with the molecular structure of compound 5a further confirmed through single-crystal X-ray
  • ), electronegativity (χ), hardness (η), and softness (S). The calculations were based on established formulas, as described in literature [49]. Natural products and synthetic medicinal compounds containing a 2-pyrrolidinone subunit. The molecular structure of 5a, showing the atom-labelling scheme and displacement
PDF
Album
Supp Info
Full Research Paper
Published 24 Apr 2025

Acyclic cucurbit[n]uril bearing alkyl sulfate ionic groups

  • Christian Akakpo,
  • Peter Y. Zavalij and
  • Lyle Isaacs

Beilstein J. Org. Chem. 2025, 21, 717–726, doi:10.3762/bjoc.21.55

Graphical Abstract
  • shows a cross-eyed stereoview of one C1·Me6CHDA complex in the crystal. Several features of this structure are noteworthy. First, the crystal structure confirms the molecular structure of C1 and its overall C-shaped geometry. Second, within the C1·Me6CHDA complex, the aromatic sidewalls are splayed away
PDF
Album
Supp Info
Full Research Paper
Published 03 Apr 2025

Photochemically assisted synthesis of phenacenes fluorinated at the terminal benzene rings and their electronic spectra

  • Yuuki Ishii,
  • Minoru Yamaji,
  • Fumito Tani,
  • Kenta Goto,
  • Yoshihiro Kubozono and
  • Hideki Okamoto

Beilstein J. Org. Chem. 2025, 21, 670–679, doi:10.3762/bjoc.21.53

Graphical Abstract
  • serves as a p-channel organic semiconductor [37], whereas perfluoropentacene can be used as an n-channel material [38]. It has been demonstrated that the molecular structure of [7]helicenes was modified by fluorination, thus, the helicenes’ pitch was manipulated by terminal fluorination modes [39][40
PDF
Album
Supp Info
Full Research Paper
Published 24 Mar 2025

Cryptophycin unit B analogues

  • Thomas Schachtsiek,
  • Jona Voss,
  • Maren Hamsen,
  • Beate Neumann,
  • Hans-Georg Stammler and
  • Norbert Sewald

Beilstein J. Org. Chem. 2025, 21, 526–532, doi:10.3762/bjoc.21.40

Graphical Abstract
  • conjugation handles in unit B. IC50 values given against (a) CCRF-CEM [20] and (b) KB-3-1 [21] cell lines. C: Cryptophycin-52 derivatives synthesised in this work. Molecular structure of Boc-ᴅ-Phe(4-NHMe)-OMe 7 as determined by single-crystal X-ray diffraction measurements. Thermal ellipsoids depicted at 50
PDF
Album
Supp Info
Full Research Paper
Published 07 Mar 2025

Unprecedented visible light-initiated topochemical [2 + 2] cycloaddition in a functionalized bimane dye

  • Metodej Dvoracek,
  • Brendan Twamley,
  • Mathias O. Senge and
  • Mikhail A. Filatov

Beilstein J. Org. Chem. 2025, 21, 500–509, doi:10.3762/bjoc.21.37

Graphical Abstract
  • bimanes studied: a) Cl2B (B), representing 90% of the disordered asymmetric unit, b) Me2B, not disordered with dotted line representing an intramolecular hydrogen bond, and c) Me4B showing the majority occupied (55%) N–N moiety. View of the molecular structure in the crystal of a) symmetry generated by
PDF
Album
Supp Info
Full Research Paper
Published 05 Mar 2025

Synthesis, structure, ionochromic and cytotoxic properties of new 2-(indolin-2-yl)-1,3-tropolones

  • Yurii A. Sayapin,
  • Eugeny A. Gusakov,
  • Inna O. Tupaeva,
  • Alexander D. Dubonosov,
  • Igor V. Dorogan,
  • Valery V. Tkachev,
  • Anna S. Goncharova,
  • Gennady V. Shilov,
  • Natalia S. Kuznetsova,
  • Svetlana Y. Filippova,
  • Tatyana A. Krasnikova,
  • Yanis A. Boumber,
  • Alexey Y. Maksimov,
  • Sergey M. Aldoshin and
  • Vladimir I. Minkin

Beilstein J. Org. Chem. 2025, 21, 358–368, doi:10.3762/bjoc.21.26

Graphical Abstract
  • given in Ångstrom. Scheme of HMBC correlations of compound 7a in DMSO-d6. Molecular structure of 2-(3,3-dimethyl-3H-benzo[g]indolin-2-yl)-5,6,7-trichloro-1,3-tropolone (7b). Result of matching structures of 7b (solid lines) and 2-(3,3-dimethylindolin-2-yl)-5,6,7-trichloro-1,3-tropolone (dashed lines) at
PDF
Album
Supp Info
Full Research Paper
Published 17 Feb 2025

Oxidation of [3]naphthylenes to cations and dications converts local paratropicity into global diatropicity

  • Abel Cárdenas,
  • Zexin Jin,
  • Yong Ni,
  • Jishan Wu,
  • Yan Xia,
  • Francisco Javier Ramírez and
  • Juan Casado

Beilstein J. Org. Chem. 2025, 21, 277–285, doi:10.3762/bjoc.21.20

Graphical Abstract
  • is using energetic parameters unequivocally associated to individual bonds. This is the case of the vibrational force constants [22]. They are defined as the second derivative of the molecular energy, in the minimum energy molecular structure, with respect to the nuclear displacement coordinates
PDF
Album
Supp Info
Full Research Paper
Published 05 Feb 2025
Other Beilstein-Institut Open Science Activities