Facile preparation of fluorine-containing 2,3-epoxypropanoates and their epoxy ring-opening reactions with various nucleophiles

• Yutaro Miyashita,
• Sae Someya,
• Tomoko Kawasaki-Takasuka,
• Tomohiro Agou and
• Takashi Yamazaki

Beilstein J. Org. Chem. 2024, 20, 2421–2433, doi:10.3762/bjoc.20.206

• intramolecular interaction between fluorine and metals would also facilitate the smooth progress of these reactions. Such high potential of 1a allowed us to apply it to nucleophilic epoxidation because the resultant epoxyester 2a is recognized as an intriguing building block (Scheme 1). Another expectation to 2a

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

• ]. Verrulactones A–C and E (43–46) are dimeric structures, where verrulactones A and B can be considered as altertenuol (31) dimers, verrulactone C consists of an altertenuol and an alternaone A (123, vide infra) moiety, and verrulactone E contains an altertenuol and a dehydroaltenusin (74, vide infra) building

• block (Figure 12). The verrulactones were isolated from Penicillium verruculosum [187][193][221] and verrulactone A and B were further isolated from Alternaria alternata [159][160]. Constitution and relative configuration of these compounds was determined by NMR-spectroscopic methods, where the

Novel truxene-based dipyrromethanes (DPMs): synthesis, spectroscopic characterization and photophysical properties

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2024, 20, 2163–2170, doi:10.3762/bjoc.20.186

• -planar having π‐conjugation [2][3][4]. Remarkably, these unique characteristics of the truxene scaffold, results in strong π–π stacking ability in addition to the strong electron‐donating capability – hinting for the truxene’s capability as a worthy building block in the advancement of cutting-edge

• the importance of DPMs in mind due to their utmost significance as a building block in the construction of porphyrinogens, related polypyrrolic macrocycles, and pigments [39][40][41]. As shown in Figure 1, these DPMs and many more have fruitfully been used by several research groups in sensing/binding

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• bacterial sugars, the parametrisation of each building block is needed and requires the use of ab initio methodologies, including several steps of charges and electron density calculations, optimization and minimization, making the computational study of bacterial glycans difficult and time-consuming. 2

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• organic synthesis. For instance, hydrazinecarbothioamide (40) can be used to synthesize bisheterocycles. Mohamed et al. were able to combine Hantzsch thiazole and Knorr pyrazole synthesis with this building block. Thiazolyl-pyrazolyl-chromenes 43 were synthesized in good yields from substituted 3

Harnessing the versatility of hydrazones through electrosynthetic oxidative transformations

• Aurélie Claraz

Beilstein J. Org. Chem. 2024, 20, 1988–2004, doi:10.3762/bjoc.20.175

• the critical role of in situ-generated molecular iodine (Scheme 8) [44]. Formal cycloaddition Hydrazones constitute a versatile building block for the construction of azacycles through formal cycloaddition reactions. Under oxidative electrochemical conditions, either the oxidation of the hydrazone or

• reactivity profile of hydrazones, the electrooxidative transformations of such a molecular building block provides a fascinating route to valuable compounds under mild and safe reaction conditions. Alone, the electrooxidation of NH-aryl, -tosyl, and -acylhydrazones triggered the cyclization of a radical

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

Hetero-polycyclic aromatic systems: A data-driven investigation of structure–property relationships

• Sabyasachi Chakraborty,
• Eduardo Mayo Yanes and
• Renana Gershoni-Poranne

Beilstein J. Org. Chem. 2024, 20, 1817–1830, doi:10.3762/bjoc.20.160

• distribution of the COMPAS-1 molecules (light blue) is contained within the distribution of the COMPAS-2 molecules (purple). In other words, the expansion of the building block library widens the property distributions towards both higher and lower energies, providing access to functional molecules with

• of building block affects the properties, and whether these effects are due solely to the presence of the heteroatoms or to the aromatic nature of heterocycles are among the questions we aim to answer in the subsequent sections. Influence of global structural features In this section, we investigate

• antiaromatic building blocks are boron-containing rings (borole, 1,4-dihydro-1,4-diborinine). Thus, it is not clear whether these trends are due to the identity of the heteroatom or to the nature of the ring. To answer this question, we investigated the influence of each individual building block. Figure 9A

Synthesis and characterization of 1,2,3,4-naphthalene and anthracene diimides

• Adam D. Bass,
• Daniela Castellanos,
• Xavier A. Calicdan and
• Dennis D. Cao

Beilstein J. Org. Chem. 2024, 20, 1767–1772, doi:10.3762/bjoc.20.155

• periphery of the aromatic core to yield different structural isomers is effective for producing interesting new materials. Ourselves and others have investigated 1,2,3,4-benzene diimide, also known as mellophanic diimide [1], as a building block for heteroacenes [2][3][4][5] and polyimides [6][7][8]. The

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• -serine, which provides the methyl group in this case. Another methyl donor that provides a C1 building block for ʟ-methionine and subsequent SAM synthesis is betaine. Betaine-homocysteine MT remethylates ʟ-homocysteine to ʟ-methionine. Non-SAM-dependent MTs catalyse B12-dependent methylations using the

Bismuth(III) triflate: an economical and environmentally friendly catalyst for the Nazarov reaction

• Manoel T. Rodrigues Jr.,
• Aline S. B. de Oliveira,
• Ralph C. Gomes,
• Amanda Soares Hirata,
• Lucas A. Zeoly,
• Hugo Santos,
• João Arantes,
• Catarina Sofia Mateus Reis-Silva,
• João Agostinho Machado-Neto,
• Leticia Veras Costa-Lotufo and
• Fernando Coelho

Beilstein J. Org. Chem. 2024, 20, 1167–1178, doi:10.3762/bjoc.20.99

• inhibitory concentration (IC50) of 10 ng/mL, lepistatin A (3), along with two other new chlorinated analogs, that were isolated from Basidiomycete Lepista sordida culture, pauciflorol F (4), isolated from Vatica pauciflora, which is an important building block for the biosynthesis of bioactive polyphenols

Structure–property relationships in dicyanopyrazinoquinoxalines and their hydrogen-bonding-capable dihydropyrazinoquinoxalinedione derivatives

• Tural N. Akhmedov,
• Ajeet Kumar,
• Daken J. Starkenburg,
• Kyle J. Chesney,
• Khalil A. Abboud,
• Novruz G. Akhmedov,
• Jiangeng Xue and
• Ronald K. Castellano

Beilstein J. Org. Chem. 2024, 20, 1037–1052, doi:10.3762/bjoc.20.92

• 13. The solvent 1,4-dioxane is crucial to the synthesis and purification in the initial two steps as other solvents such as THF make the purification process more intricate. This sequence is followed by SNAr with ammonia (29% v/v) to obtain building block diaminopyrazine 12. The synthesis of

• Yamashita’s DCPQs 1a (BenzCN) and 2a (XyICN) began via SNAr reaction of commercially available o-phenylenediamines 11a and 11b with building block 13 to afford dihydropyrazine derivatives 8 and 9, respectively, as precipitates in 1,4-dioxane solution. The reaction generates two equivalents of HCl, adding a

• modified procedure from the literature was implemented [28]. To synthesize 6a, the condensation was performed with 9,10-phenanthrenequinone, building block 12 in the presence of glacial CH3COOH, trifluoracetic acid, and 1,4-dioxane at reflux. Then, recrystallization from DMF and sublimation under ambient

Carbonylative synthesis and functionalization of indoles

• Alex De Salvo,
• Raffaella Mancuso and
• Xiao-Feng Wu

Beilstein J. Org. Chem. 2024, 20, 973–1000, doi:10.3762/bjoc.20.87

• powerful method for the introduction of a C1 building block into organic substrates using carbon monoxide, its surrogates, or compounds able to act as carbon monoxide sources [11]. In recent years, many groups have used the carbonylation approach for the synthesis and functionalization of indoles, which is

• synthesis of a set of 12 desired products. These included an ethyl ester and a carboxylic acid, and were all obtained in good yields of up to 99% (Scheme 45). Conclusion We have summarized the importance of carbon monoxide as C1 building block to promote different kinds of transformations to synthesize and

Innovative synthesis of drug-like molecules using tetrazole as core building blocks

• Jingyao Li,
• Ajay L. Chandgude,
• Qiang Zheng and
• Alexander Dömling

Beilstein J. Org. Chem. 2024, 20, 950–958, doi:10.3762/bjoc.20.85

• ]. In stark contrast, a method for the synthesis of drug-like tetrazole compound libraries involving a building block approach have remained elusive, with success being reported thus far only with the tetrazole amine [14][15]. The use of a tetrazole building block in MCRs would have all the advantages

• due to the protected nature of the tetrazol. Additionally, inclusion of a strategically placed tetrazole and bioisostere replacement of MCR substrate with tetrazole may give rise to molecules with improved drug-like characteristics with nominal weight or size difference. This tetrazole building block

• approach will allow direct access to ready to screen molecular scaffolds for medicinal chemistry programs to investigate different biological activities [16][17][18]. Motivated by the shortcomings of current methodologies and the absence of a tetrazole building block approach, we have pursued and report

(Bio)isosteres of ortho- and meta-substituted benzenes

• H. Erik Diepers and
• Johannes C. L. Walker

Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78

• from both compounds. The first investigation of 1,2-BCPs as an isosteric replacement for ortho-benzene was reported by Baran, Collins and co-workers [26]. They prepared a wide variety of 1,2-BCPs from a common 2-substituted [1.1.1]propellane building block, propellane 3a (Scheme 1A). Propellane 3a was

• methylation of the intermediate diacid. As for the 1,2-cubanes, the authors were able to derivatise this general building block into a range of other 1,3-cubanes via metallophotoredox catalysis using acid 167 and redox active esters 168 and 169 (Scheme 17B) [51]. Arylation (to 170), amination (to 171) and

Skeletal rearrangement of 6,8-dioxabicyclo[3.2.1]octan-4-ols promoted by thionyl chloride or Appel conditions

• Martyn Jevric,
• Julian Klepp,
• Johannes Puschnig,
• Oscar Lamb,
• Christopher J. Sumby and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2024, 20, 823–829, doi:10.3762/bjoc.20.74

• cyrene (2) allows for its use as a chiral solvent [4]. This product is emerging as a promising platform chemical for the construction of chiral small molecules for pharmaceuticals [5][6][7][8], as a building block for catalysts and auxiliaries [9][10][11], and in materials applications [12][13][14]. New

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

• release of siRNA or miRNA encapsulated within them into the solution in vitro and in vivo [21]. The closed conformation of 2 with parallel alkyl chains acts as a building block of the bilayer membrane and is packed together with other lipids. When the surrounding medium becomes acidic, the tweezers adopt

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• -substituted soluble precursors 3a–f owing to increased modularity (Scheme 5) [62]. To this aim, acenaphthene was selected as key building block and it underwent two successive regioselective halogenations to give bromochloroacenaphthene 8 in 64% overall yield. The latter was next converted into the

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• is synthesized on the inner leaflet of the cytoplasmic membrane, before translocation to the outer leaflet, where it is then used as the monomeric building block of peptidoglycan biosynthesis. Lipid II is a validated antibiotic target for clinically prescribed antibiotics including vancomycin and

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• explore further annellation of dihydropyrrole and pyrrole units at the DTF moiety of an IF-DTF. A phosphite-mediated coupling of either 1,3-dithiole-2-thione 2, 7, or 8 with IF dione 1 afforded IF-DTFs 9–11, as shown in Scheme 1. Compound 11 was also obtained from building block 4 via the pyrrolo

• various elaborate systems [24][25][26][27]. Next, we wanted to explore IF-DTFs as motifs for acetylenic scaffolding (Scheme 4). Starting from IF-DTF building block 6, dibromo-olefinated compound 18 was obtained by a Ramirez/Corey–Fuchs reaction. Two-fold Sonogashira couplings with trimethylsilylacetylene

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• -dibromopyridine. Negishi cross-coupling with 9-anthrylzinc chloride in the presence of PdCl2(PhCN)2/P(t-Bu)3 as catalyst afforded the common precursor 3,5-dianthrylpyridine (prePA), a simple yet novel bent building block, in 81% yield. For the synthesis of the methyl derivative, prePA was N-alkylated with excess

• materials. Conclusion We have developed new pyridinium-based bent amphiphiles PA-R that can be facilely accessed from simple yet novel building block 3,5-dianthrylpyridine in 1–3 steps. The amphiphiles quantitatively self-assembled into ≈2 nm-sized aromatic micelles (PA-R)n via the hydrophobic effect and π

GlAIcomics: a deep neural network classifier for spectroscopy-augmented mass spectrometric glycans data

• Thomas Barillot,
• Baptiste Schindler,
• Baptiste Moge,
• Elisa Fadda,
• Franck Lépine and
• Isabelle Compagnon

Beilstein J. Org. Chem. 2023, 19, 1825–1831, doi:10.3762/bjoc.19.134

• ), thus providing valuable additional isomer resolution [4]. We demonstrated that this multidimensional MS–IR molecular fingerprint is unique to each carbohydrate building block and can be used to resolve their full sequence, including their monosaccharide content and the detail of their linkages

Tying a knot between crown ethers and porphyrins

• Maksym Matviyishyn and
• Bartosz Szyszko

Beilstein J. Org. Chem. 2023, 19, 1630–1650, doi:10.3762/bjoc.19.120

• presented a crown ether-expanded Schiff porphyrinoid synthesis [56]. Compound 15 incorporated a tripyrrane unit merged with an oligo(ethylene glycol) chain through imine linkages (Scheme 5). The hybrid comprised a core shared amongst a tripyrrane building block and a segment of crown ether linked through

Synthesis of 7-azabicyclo[4.3.1]decane ring systems from tricarbonyl(tropone)iron via intramolecular Heck reactions

• Aaron H. Shoemaker,
• Elizabeth A. Foker,
• Elena P. Uttaro,
• Sarah K. Beitel and
• Daniel R. Griffith

Beilstein J. Org. Chem. 2023, 19, 1615–1619, doi:10.3762/bjoc.19.118

• ring system [5] (3, Scheme 1). We sought to demonstrate that this iron complex could serve as a common, versatile building block for additional azapolycyclic skeletons. The 7-azabicyclo[4.3.1]decane ring system is found within several complex alkaloids, including daphnicyclidin A [6][7][8][9] and

• of tropone as a synthetic building block for accessing functionalized azapolycycles containing seven-membered rings. Complex alkaloids containing the 7-azabicyclo[4.3.1]decane ring system. Synthesis of diverse azapolycycles from iron complex 2 derived from tricarbonyl(tropone)iron. Synthesis of Heck

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• was converted to the epoxide 7.5 by cyclisation in the presence of potassium carbonate in methanol, thus producing the interesting building block 7.5. A second option, optimized to avoid the formation of epoxide, used a hindered base and the reactive benzyltriflate as electrophile to achieve under