Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• Crystals suitable for single-crystal X-ray diffraction studies were obtained for compounds 25, 26, and 29. Their structures are shown in Figure 10, top, and their respective crystal packings below. All three compounds pack in a herringbone manner in the crystal structure, with the major difference that

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• regarded as stable phosphonium enolate zwitterions. The first zwitterions of this type were published in 1955 [31], but the first crystal structure of a phosphonium enolate zwitterion was reported only in 2007 by Zhu et al., who synthesized the compound via a three-component coupling between an

Aldiminium and 1,2,3-triazolium dithiocarboxylate zwitterions derived from cyclic (alkyl)(amino) and mesoionic carbenes

• Nedra Touj,
• François Mazars,
• Guillermo Zaragoza and
• Lionel Delaude

Beilstein J. Org. Chem. 2023, 19, 1947–1956, doi:10.3762/bjoc.19.145

• zwitterions.a Supporting Information Supporting Information File 26: Experimental procedures, X-ray crystal structure determinations, copies of 1H NMR, 13C NMR, and FTIR spectra. Acknowledgements The authors would like to thank Apeiron Synthesis for a gift of aldiminium tetrafluoroborate salts 3a and 3c, Mr

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• and 4N8W complexes, respectively. The dodecamer ligand docked to the protein in such a way that the hexameric part with the 4-sulfation (as observed in the crystal structure) occupied the 4N8W site and the hexameric part with the 6-sulfation bound to the site observed in the 3C9E structure. The

• comparison of the final structure and that obtained after the docking yielded RMSatd of 10.2 Å, which shows that the pulling back results in the structure more similar to that of the crystal structure than to the initial docked pose. A similar comparison of the final structure obtained at the end of the

• sliding in process was done for the other complexes with their corresponding crystal structures and the one obtained after docking. The ligands’ RMSatd values (Tables S1 and S2 in Supporting Information File 1) show that in the majority of the complexes the final structure is more similar to the crystal

Construction of diazepine-containing spiroindolines via annulation reaction of α-halogenated N-acylhydrazones and isatin-derived MBH carbonates

• Xing Liu,
• Wenjing Shi,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 1923–1932, doi:10.3762/bjoc.19.143

• yields. The chemical structures of the spiro compounds 7a–n were established by various spectroscopy methods. In addition, the single crystal structure of compound 7a was also determined by X-ray diffraction (Figure 1). As can be seen from Figure 1, both the C–C and C–N double bonds are part of the

• cm−1; HRMS–ESI TOF (m/z): [M + Na]+ calcd for C34H28ClN4O3SNa, 595.1774; found, 595.1765. The crystallographic data of compound 7a (CCDC 2280223) have been deposited at the Cambridge Crystallographic Database Centre. Single crystal structure of the spiro compound 7a. Representative [4 + 3

Decarboxylative 1,3-dipolar cycloaddition of amino acids for the synthesis of heterocyclic compounds

• Xiaofeng Zhang,
• Xiaoming Ma and
• Wei Zhang

Beilstein J. Org. Chem. 2023, 19, 1677–1693, doi:10.3762/bjoc.19.123

• the R2 group. The stereochemistry of products 10 and 11 was confirmed by X-ray crystal structure and the 1H NMR analysis of both the major and minor diastereomers [69]. The first cycloaddition gives adducts 12 and 12’ as a diastereomeric mixture. At the second cycloaddition, both major and minor

• symmetry. The stereochemistry of the products was confirmed by X-ray crystal structure and NMR analysis. The reaction mechanism shown in Scheme 11 suggests that a semi-stabilized AMY 16 generated from the reaction of glycine and arylaldehydes undergoes a [3 + 2] cycloaddition with 14a via the favorable

Benzoimidazolium-derived dimeric and hydride n-dopants for organic electron-transport materials: impact of substitution on structures, electrochemistry, and reactivity

• Swagat K. Mohapatra,
• Khaled Al Kurdi,
• Samik Jhulki,
• Georgii Bogdanov,
• John Bacsa,
• Maxwell Conte,
• Tatiana V. Timofeeva,
• Seth R. Marder and
• Stephen Barlow

Beilstein J. Org. Chem. 2023, 19, 1651–1663, doi:10.3762/bjoc.19.121

• , reacts more rapidly than any of the other dimers with VII via “electron-transfer-first”. Crystal structures show rather long central C–C bonds for 1b2 (1.5899(11) and 1.6194(8) Å) and 1h2 (1.6299(13) Å). Keywords: benzoimidazole; crystal structure; kinetics; n-dopant; reduction; Introduction Electrical

• broadening and then coalescence of some of these peaks on increasing the temperature, consistent with the room-temperature spectrum being affected by restricted rotation; interestingly the crystal structure of 1b2 contains molecules with two very different conformations (see below). The 12 dimers are

• , morpholinonyl dimers (22–52, respectively, Figure 2) have been reported in different chemical contexts [35][36][37][38]. The crystal structure of (N-DMBI)2, 1b2 (Figure 3), contains two crystallographically inequivalent molecules that are geometrically rather different from each other. One of the molecules has

Lewis acid-promoted direct synthesis of isoxazole derivatives

• Dengxu Qiu,
• Chenhui Jiang,
• Pan Gao and
• Yu Yuan

Beilstein J. Org. Chem. 2023, 19, 1562–1567, doi:10.3762/bjoc.19.113

• beneficial to the reaction outcome than electron-rich groups in the phenyl ring (3a–f). The crystal structure of product 3i is shown in Figure 2. Also, substituents in different positions of the phenyl ring in acetylene 1 smoothly reacted with NaNO2 under the reaction conditions affording the products in

• molecules containing isoxazole moieties. Crystal structure of 3i. Traditional methods for the synthesis of isoxazoles and the current approach. Reaction scope of alkynes. Conditions: 1 (0.1 mmol, 1 equiv), 2a (0.2 mmol, 2 equiv), AlCl3 (0.3 mmol, 3 equiv), NaNO2 (1 mmol, 10.0 equiv), DMAc (1.0 mL), N2

Functions of enzyme domains in 2-methylisoborneol biosynthesis and enzymatic synthesis of non-natural analogs

• Binbin Gu,
• Lin-Fu Liang and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 1452–1459, doi:10.3762/bjoc.19.104

• versions of 2MIBSs exhibit a proline-rich N-terminal domain of unknown function that appears disordered in the crystal structure [28]. As a first aspect of this study, we have investigated the possible function of this N-terminal domain. 2MIBS is known to form several methylated monoterpenes as side

Organic thermally activated delayed fluorescence material with strained benzoguanidine donor

• Alexander C. Brannan,
• Elvie F. P. Beaumont,
• Nguyen Le Phuoc,
• George F. S. Whitehead,
• Mikko Linnolahti and
• Alexander S. Romanov

Beilstein J. Org. Chem. 2023, 19, 1289–1298, doi:10.3762/bjoc.19.95

• presence of a glide plane in the data supporting the refinement in the chiral P21 space group. The structure was refined as a two-component inversion twin; the crystal structure as a whole is a racemic mixture of both orientations. The Cbenzene–Nbenzoguanidine bond length varies within the error of the

• HOMO–LUMO overlap integrals were calculated using Multiwfn program [30]. The molecular structures of the title compound 4BGIPN and the benchmark TADF emitter 4CzIPN. Crystal structure for compound 4BGIPN in monoclinic form ((a) top view and (b) side view) where black arrows show opposite orientation of

• the benzoguanidine moieties around the central benzene ring. Representative example for the torsion angle α is shown in red; (c) Crystal structure for compound 4BGIPN in triclinic form; (d) packing diagram with key geometrical parameters and intermolecular contacts shown as a cyan dashed line; (e

Selective construction of dispiro[indoline-3,2'-quinoline-3',3''-indoline] and dispiro[indoline-3,2'-pyrrole-3',3''-indoline] via three-component reaction

• Ziying Xiao,
• Fengshun Xu,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 1234–1242, doi:10.3762/bjoc.19.91

• effect. The single crystal structure of compound 3a was determined by X-ray crystallographic diffraction (Figure 1). From Figure 1 it can be seen that the two scaffolds of oxindole at neighboring positions are in trans-configuration. The ethoxycarbonyl group is also in trans-position to the carbonyl

• group in the neighboring oxindole scaffold. Therefore, it can be concluded that the obtained dispiro compounds 3a–m have this kind of relative configuration on the basis of 1H NMR spectra and crystal structure determination. It should be pointed out that ammonium acetate was employed as nitrogen source

• different reactivity to that of the adducts of 3-ethoxycarbonylmethyleneoxindoles. For confirming the chemical structures of dispirooxindoles 4a–i, the single crystal structure of compound 4a was determined by X-ray diffraction (Figure 2). In Figure 2, the two oxindole scaffolds are in trans-position. The

Exploring the role of halogen bonding in iodonium ylides: insights into unexpected reactivity and reaction control

• Carlee A. Montgomery and
• Graham K. Murphy

Beilstein J. Org. Chem. 2023, 19, 1171–1190, doi:10.3762/bjoc.19.86

• significant improvement over the 37% achieved by Müller in 1995 with ylide 31 [3]. The crystal structure of 39 was also reported and it showed clear secondary halogen bonding that engaged both of iodine’s σ-holes, as both intramolecular (2.9 Å I1–O1) and intermolecular (2.9 Å (I1–O2) interactions (Figure 15

• derived iodonium ylides 63a and 63b. Proposed equilibration of intermediates to transit between 64a (the initial adduct formed between 61d and fluoride) and 64c, to properly situate fluorine for reductive elimination. X-ray crystal structure of dimeric 39 [6], (CCDC# 893474) [143][144]. Transition state

Synthesis of imidazo[4,5-e][1,3]thiazino[2,3-c][1,2,4]triazines via a base-induced rearrangement of functionalized imidazo[4,5-e]thiazolo[2,3-c][1,2,4]triazines

• Dmitry B. Vinogradov,
• Alexei N. Izmest’ev,
• Angelina N. Kravchenko,
• Yuri A. Strelenko and
• Galina A. Gazieva

Beilstein J. Org. Chem. 2023, 19, 1047–1054, doi:10.3762/bjoc.19.80

• . Acknowledgements Crystal structure determination was performed in the Department of Structural Studies of the N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences.

CO₂ complexation with cyclodextrins

• Cecilie Høgfeldt Jessen,
• Jesper Bendix,
• Theis Brock Nannestad,
• Heloisa Bordallo,
• Martin Jæger Pedersen,
• Christian Marcus Pedersen and
• Mikael Bols

Beilstein J. Org. Chem. 2023, 19, 1021–1027, doi:10.3762/bjoc.19.78

• , are studied as potential CO2 capture agents due to their unique molecular structures and high selectivity towards CO2. In this paper we have investigated binding efficiency of a number of cyclodextrins towards CO2. It is found that the crystal structure of α-cyclodextrin with CO2 has a 1:1

• an economic CO2 capture technology. We have therefore studied the binding of CO2 to simple cyclodextrins to determine binding stoichiometry and affinity. It is found that the crystal structure of α-cyclodextrin with CO2 has 1:1 stoichioimetry and that a number of simple and modified cyclodextrins

• work. X-ray crystal structure of CO2 bound to α-CD. TGA curve (blue) and dTGA curve (red) for CO2-1 crystals. Two lumps are seen with the former predominantly being CO2 and the second pre-dominantly water. Cell used to measure vis spectra under pressure (left), structure of 7 (middle) and spectrum of 7

The unique reactivity of 5,6-unsubstituted 1,4-dihydropyridine in the Huisgen 1,4-diploar cycloaddition and formal [2 + 2] cycloaddition

• Xiu-Yu Chen,
• Hui Zheng,
• Ying Han,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 982–990, doi:10.3762/bjoc.19.73

• crystal structure of compound 4k (Figure 1, CCDC 2059918). Though there are four chiral centers in the product structure of the isoquinolino[1,2-f][1,6]naphthyridine, the 1H NMR spectra of the products all showed that only one diastereomer was produced in the reaction, which showed that this reaction has

• , 1040, 914, 854, 769, 704 cm−1; HRESIMS (m/z): [M + Na]+ calcd for C29H30NaN2O8, 557.1894; found, 557.1891. Single crystal structure of the compound 4k. Single crystal structure of compound 5a. Single crystal structure of compound 6f. Various cycloaddition reactions of 5,6-unsymmetric 1,4

A fluorescent probe for detection of Hg²⁺ ions constructed by tetramethyl cucurbit[6]uril and 1,2-bis(4-pyridyl)ethene

• Xiaoqian Chen,
• Naqin Yang,
• Yue Ma,
• Xinan Yang and
• Peihua Ma

Beilstein J. Org. Chem. 2023, 19, 864–872, doi:10.3762/bjoc.19.63

• structure of the inclusion complex formed by TMeQ[6] and G was obtained using X-ray single-crystal diffraction analysis. The crystal data and parameters are shown in Table 2. The single-crystal structure determination shows that the inclusion complex crystallizes in the triclinic crystal system, with the

• chiral space group P-1. Figure 4a shows that the basic crystal structure of complex 1 contains a TMeQ[6] molecule, a G molecule, a free water molecule and a [ZnCl4]2− anion. It can be clearly seen that one pyridyl group of the G molecule enters the cavity of TMeQ[6], whereas the other pyridyl group is

• spectroscopy data were recorded on a JEOL JNM-ECZ400s spectrometer in D2O at 293.15 K [42]. X-ray crystallography Using single-crystal X-ray diffraction has been previously described in the literature [43]. The main crystal structure parameters are recorded in Table 2. In addition, CCDC-2225763 contains the

Synthesis of substituted 8H-benzo[h]pyrano[2,3-f]quinazolin-8-ones via photochemical 6π-electrocyclization of pyrimidines containing an allomaltol fragment

• Constantine V. Milyutin,
• Andrey N. Komogortsev,
• Boris V. Lichitsky,
• Mikhail E. Minyaev and
• Valeriya G. Melekhina

Beilstein J. Org. Chem. 2023, 19, 778–788, doi:10.3762/bjoc.19.58

• ppm are present. In addition to the aforementioned characterization methods, the crystal structure of 11g·0.5EtOH was determined by single-crystal X-ray diffraction analysis. Its asymmetric unit contains 12 crystallographically unique molecules of 11g (Z' = 12, Z = 24) and 6 independent ethanol

• DMSO-d6 solution. The crystal structure of compound 11a (one of two polymorph modifications; p = 50%), CCDC 2248033. One of crystallographically unique molecules of 11g (p = 50%), CCDC 2248035. Photochemical behavior of terarylenes containing an allomaltol fragment. Synthesis of starting compounds 9

Bromination of endo-7-norbornene derivatives revisited: failure of a computational NMR method in elucidating the configuration of an organic structure

• Demet Demirci Gültekin,
• Arif Daştan,
• Yavuz Taşkesenligil,
• Cavit Kazaz,
• Yunus Zorlu and
• Metin Balci

Beilstein J. Org. Chem. 2023, 19, 764–770, doi:10.3762/bjoc.19.56

• compound 6. Bromination of endo-7-bromonorbornene. Our mechanism suggested for the formation of 6 [4]. The mechanism suggested by Novitskiy and Kutateladze for the formation of 7 [3]. Supporting Information Supporting Information File 102: Double resonance spectra and X-ray crystal structure. Funding The

Construction of hexabenzocoronene-based chiral nanographenes

• Ranran Li,
• Di Wang,
• Shengtao Li and
• Peng An

Beilstein J. Org. Chem. 2023, 19, 736–751, doi:10.3762/bjoc.19.54

• -workers reported pyrrole-containing helical NGs 19 and 20. The precursors 17 and 18 were synthesized from pyrrole-containing alkynes and tetracyclone 2 through a typical Diels–Alder reaction. The pair of enantiomers of these aza-[5]helicenes was confirmed by the X-ray crystal structure of racemic

Synthesis, structure, and properties of switchable cross-conjugated 1,4-diaryl-1,3-butadiynes based on 1,8-bis(dimethylamino)naphthalene

• Semyon V. Tsybulin,
• Ekaterina A. Filatova,
• Alexander F. Pozharskii,
• Valery A. Ozeryanskii and
• Anna V. Gulevskaya

Beilstein J. Org. Chem. 2023, 19, 674–686, doi:10.3762/bjoc.19.49

• nitro group. There are two types of independent non-equivalent dications, marked in blue and green, and two types of BF4− anions, marked in red and yellow, in the crystal structure of salt 11c (Figure S68 in Supporting Information File 1). Monomer fragments in both are identical (Table 2, Figure 5). The

Synthesis and reactivity of azole-based iodazinium salts

• Thomas J. Kuczmera,
• Annalena Dietz,
• Andreas Boelke and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2023, 19, 317–324, doi:10.3762/bjoc.19.27

• Olaru and Dr. Pim Puylaert from the Institute for Inorganic Chemistry and Crystallography, University of Bremen, are gratefully acknowledged for crystal structure measurements.

Synthesis and characterisation of new antimalarial fluorinated triazolopyrazine compounds

• Kah Yean Lum,
• Jonathan M. White,
• Daniel J. G. Johnson,
• Vicky M. Avery and
• Rohan A. Davis

Beilstein J. Org. Chem. 2023, 19, 107–114, doi:10.3762/bjoc.19.11

• ) triazolopyrazine scaffold (Series 4). The structures of all analogues were fully characterised by NMR, UV and MS data analysis; three triazolopyrazines were confirmed by X-ray crystal structure analysis. The inhibitory activity of all compounds against the growth of the malaria parasite Plasmodium falciparum (3D7

Revisiting the bromination of 3β-hydroxycholest-5-ene with CBr₄/PPh₃ and the subsequent azidolysis of the resulting bromide, disparity in stereochemical behavior

• Christian Schumacher,
• Jas S. Ward,
• Kari Rissanen,
• Carsten Bolm and
• Mohamed Ramadan El Sayed Aly

Beilstein J. Org. Chem. 2023, 19, 91–99, doi:10.3762/bjoc.19.9

• revealed by X-ray single crystal structure analyses, and the NMR data are in agreement to the reported ones. In light of these findings, we herein correct the previous stereochemical assignments reported by one of us in the Beilstein J. Org. Chem. 2015, 11, 1922–1932 and the Monatsh. Chem. 2018, 149, 505

• –517. Keywords: Appel reaction; azidolysis; cholesterol; crystal structure; Walden inversion; Introduction 3β-Hydroxycholest-5-ene (cholesterol) is a structural and physiologic amphipathic steroid in human and animals as well. Cholesterol is an essential component of the plasma membrane, where it

• different mesh numbers. Single crystals of both were obtained by slow evaporation from diethyl ether. The less polar, minor material gave ice-white needles, and an X-ray single crystal structure determination revealed the product to be cholesta-3,5-diene (9, Figure 3). The 1H NMR data of 9 are in full

Catalytic aza-Nazarov cyclization reactions to access α-methylene-γ-lactam heterocycles

• Bilge Banu Yagci,
• Selin Ezgi Donmez,
• Onur Şahin and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2023, 19, 66–77, doi:10.3762/bjoc.19.6

• -Nazarov cyclization. X-ray crystal structure of compound 19l. Examples of aza-Nazarov reactions. Aza-Nazarov cyclization on gram scale. Scope of the aza-Nazarov cyclization with acyclic imines. aThe syntheses of aza-Nazarov products 19b, 19c, and 19f were described previously [35]. bThe reaction was

Inclusion complexes of the steroid hormones 17β-estradiol and progesterone with β- and γ-cyclodextrin hosts: syntheses, X-ray structures, thermal analyses and API solubility enhancements

• Alexios I. Vicatos,
• Zakiena Hoossen and
• Mino R. Caira

Beilstein J. Org. Chem. 2022, 18, 1749–1762, doi:10.3762/bjoc.18.184

• thus, unless the guest molecule also possesses this symmetry, it will be severely disordered and hence not able to be modelled. In many instances, the pursuance of the crystal structure of an inclusion compound that suffers from such severe guest disorder is eventually abandoned owing to the

• program PLATON [43]. Following automatic location of prominent voids in the unit cell of each crystal structure, this procedure provides an estimate of the total number of residual electrons they contain, which in these complexes would correspond to those of the included steroidal molecules. From these