Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• ]. Further O-MTs can be classified based on a common acceptor group of modification, namely C-terminal carboxy-MTs and peptide/protein ʟ-aspartyl O-MTs (PAMTs). C-terminal carboxymethyltransferases Carboxy-MTs catalyse the formation of a methyl ester by methylating the oxygen atom within the hydroxy group of

• peptides at the C-terminal carboxy group of different amino acids, namely methionine, isoleucine, and valine. This demonstrates its tolerance to various substrates. LahSB does not require the leader peptide or other modifying enzymes to carry out its function [72], making it a promising tool for

• proposed to methylate lassomycin [77]. PAMTs – peptide/protein ʟ-aspartyl O-methyltransferases PAMTs share a conserved C-terminal domain, substantial sequence homology, and a common enzymatic activity. They catalyse the conversion between aspartate and isoaspartate with aspartyl-O-methyl ester and

Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty

• Weimao Zhong and
• Vinayak Agarwal

Beilstein J. Org. Chem. 2024, 20, 1635–1651, doi:10.3762/bjoc.20.146

• NRPS-derived macrolactam ureidopeptide, bulbiferamide (27, Figure 10), was isolated and characterized from a coral-derived Microbulbifer sp. C10-1 by Igarashi and co-workers [7]. The ureido linkage did not allow for the peptide main chain in 27 to possess a terminal primary amine and none of the side

• chains possessed a nucleophilic primary amine. Curiously, the macrocyclizing amide bond was found to exist between a Trp side chain indole nitrogen and the C-terminal carboxylate. To the best of our knowledge, this was the first example of the involvement of a Trp indole in macrolactam formation in

Mining raw plant transcriptomic data for new cyclopeptide alkaloids

• Draco Kriger,
• Michael A. Pasquale,
• Brigitte G. Ampolini and
• Jonathan R. Chekan

Beilstein J. Org. Chem. 2024, 20, 1548–1559, doi:10.3762/bjoc.20.138

• -translational modifications by specific tailoring enzymes [5][6]. This precursor peptide substrate can be subdivided into multiple segments including 1) an N-terminal leader or recognition sequence used for binding by the tailoring enzymes and 2) a core peptide that is targeted for modification by the

• cyclopeptide alkaloids due to the invariant C-terminal Tyr residue (Figure 3). Rubiaceae family Our previous results revealed Coffea arabica (Arabica coffee plant), to be a cyclopeptide alkaloid producer [7]. In contrast to those from the Rhamnaceae family, these cyclopeptide alkaloids were only cyclized and

• -terminal Phe residue. Additional 663.3192 and 581.3345 m/z features were also present in the GNPS network, but MS/MS fragmentation could not definitively support a specific structure. For a better understanding of the biosynthesis of burpitides in G. jasminoides, we explored the genomic context by using

Bioinformatic prediction of the stereoselectivity of modular polyketide synthase: an update of the sequence motifs in ketoreductase domain

• Changjun Xiang,
• Shunyu Yao,
• Ruoyu Wang and
• Lihan Zhang

Beilstein J. Org. Chem. 2024, 20, 1476–1485, doi:10.3762/bjoc.20.131

• KRC, the N-terminal helix αB and the lid region αFG located at the C-terminal of KRC (Figure 2d). Indeed, this lid region exhibits a direct interaction with the DH and DH-KR linker (Figure 2c). However, such interaction was not observed between the N-terminal helix αB and DH in the crystal structure

Challenge N- versus O-six-membered annulation: FeCl₃-catalyzed synthesis of heterocyclic N,O-aminals

• Giacomo Mari,
• Lucia De Crescentini,
• Gianfranco Favi,
• Fabio Mantellini,
• Diego Olivieri and
• Stefania Santeusanio

Beilstein J. Org. Chem. 2024, 20, 1412–1420, doi:10.3762/bjoc.20.123

• ), whose sequential acylation process by iso(thio)cyanates 3a–h gives rise to the asymmetric (thio)urea derivatives (intermediate II). The spontaneous nucleophilic attack of the (thio)amide nitrogen on the terminal methyl ester function at C-4 of the starting azo-ene system provides a regioselective

Generation of alkyl and acyl radicals by visible-light photoredox catalysis: direct activation of C–O bonds in organic transformations

• Mithu Roy,
• Bitan Sardar,
• Itu Mallick and
• Dipankar Srimani

Beilstein J. Org. Chem. 2024, 20, 1348–1375, doi:10.3762/bjoc.20.119

• organic dye Mes–Acr–MeClO4 as photocatalyst (Scheme 5). They demonstrated intermolecular radical cyclization of o-hydroxybenzoic acid derivatives with terminal alkynes to afford flavone derivatives. Here, functionally diverse flavonoids were synthesized in moderate to excellent yield by reacting various

• and provide the desired products with good yield. Cyclopentanol-derived oxalates, some heterocyclic oxalates, and natural-product-derived oxalates were also compatible with this method. In 2018, Chu and co-workers [47] devised an elegant protocol for achieving syn-alkylarylation of terminal alkynes

• terminal arylalkynes bearing electron-donating and electron-withdrawing substituents were well compatible with this method. The procedure is limited to electron-withdrawing and electron-neutral aryl halides. The presence of a conjugated substituent in the p-position of an aryl halide is crucial for

Domino reactions of chromones with activated carbonyl compounds

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 1256–1269, doi:10.3762/bjoc.20.108

• ][11][12]. For example, 2 can be transformed to its dianion 7 by action of two equivalents of LDA or by sequential addition of sodium hydride and n-butyllithium (Scheme 1). In contrast to 2, dianion 7 reacts with electrophiles at its terminal carbon atom. 1,3-Bis(silyloxy)-1,3-butadienes, containing

• trimethylchlorosilane. A direct preparation of 6a by reaction of dianion 7 with trimethylchlorosilane is not possible, because the silylation occurs at the terminal carbon atom of the dianion. (2,4-Dioxobutylidene)phosphorane 8 also represents a synthetic equivalent of dianion 7 [23]. However, reactions of such

• (Scheme 9) [39]. The formation of the products can be explained by 1,4-addition of the terminal carbon of the diene to the chromone to give intermediate J and subsequent attack of the central carbon atom of the 1,3-dicarbonyl unit (aldol reaction). No aromatization and extrusion of the hydroxy group was

Cofactor-independent C–C bond cleavage reactions catalyzed by the AlpJ family of oxygenases in atypical angucycline biosynthesis

• Jinmin Gao,
• Liyuan Li,
• Shijie Shen,
• Guomin Ai,
• Bin Wang,
• Fang Guo,
• Tongjian Yang,
• Hui Han,
• Zhengren Xu,
• Guohui Pan and
• Keqiang Fan

Beilstein J. Org. Chem. 2024, 20, 1198–1206, doi:10.3762/bjoc.20.102

• analysis of the alp gene cluster from Streptomyces ambofaciens revealed AlpG as the homolog of JadH. The N-terminal His6-tagged construct of AlpG was expressed and purified to homogeneity in E. coli (Figure S2, Supporting Information File 1). The purified AlpG displayed a light yellow color, and the

• -terminal His6-tagged Flu17 was expressed and purified to homogeneity in E. coli BL21 (Figure S2, Supporting Information File 1). Significantly, Flu17 alone demonstrated the ability to convert 8 into products 4, 5, and 10 (Figure 1, trace g). Furthermore, incubating 8 with JadG and ʟ-isoleucine yielded 6

• NdeI and HindIII, and cloned into pET28a to construct the expression plasmid of N-terminal His6-tagged AlpG. The codon-optimized flu17 gene was synthesized by Synbio Technologies, digested with NdeI and HindIII, and cloned into pET28a to afford the expression plasmid of N-terminal His6-tagged Flu17

Kinetically stabilized 1,3-diarylisobenzofurans and the possibility of preparing large, persistent isoacenofurans with unusually small HOMO–LUMO gaps

• Qian Liu and
• Glen P. Miller

Beilstein J. Org. Chem. 2024, 20, 1099–1110, doi:10.3762/bjoc.20.97

• neutral, closed-shell resonance forms (Figure 1) in which any one of the five 6-membered rings possess an aromatic sextet. If the aromatic sextet is located in a terminal ring of the molecule, as in resonance forms P1 and P5 of Figure 1, then the remaining π-electrons are delocalized over four rings

Synthesis of 1,4-azaphosphinine nucleosides and evaluation as inhibitors of human cytidine deaminase and APOBEC3A

• Maksim V. Kvach,
• Stefan Harjes,
• Harikrishnan M. Kurup,
• Geoffrey B. Jameson,
• Elena Harjes and
• Vyacheslav V. Filichev

Beilstein J. Org. Chem. 2024, 20, 1088–1098, doi:10.3762/bjoc.20.96

• partially localised in the nucleus of cells and, in cancer cells, become genotoxic [24]. A3A and A3H are single-domain enzymes, whereas A3B is a double-domain enzyme, in which only the C-terminal domain (CTD) has catalytic activity, and the N-terminal domain (NTD) is responsible for binding of DNA and for

A Diels–Alder probe for discovery of natural products containing furan moieties

• Alyssa S. Eggly,
• Namuunzul Otgontseren,
• Carson B. Roberts,
• Amir Y. Alwali,
• Haylie E. Hennigan and
• Elizabeth I. Parkinson

Beilstein J. Org. Chem. 2024, 20, 1001–1010, doi:10.3762/bjoc.20.88

• ][16]. One probe has been developed capable of undergoing a Diels–Alder reaction with a peptide containing a terminal furan [17]. However, to date, no one has developed probes that have been demonstrated to work well with natural products containing furans. Therefore, we have developed a probe that can

Carbonylative synthesis and functionalization of indoles

• Alex De Salvo,
• Raffaella Mancuso and
• Xiao-Feng Wu

Beilstein J. Org. Chem. 2024, 20, 973–1000, doi:10.3762/bjoc.20.87

• bearing a secondary amino group and an internal triple bond [16]. In the same research group, it has been demonstrated that with a terminal alkynyl group, the reactivity is completely different leading to the formation of dihydroindol-2-one derivatives [17]. The process was versatile and efficient towards

Enhancing structural diversity of terpenoids by multisubstrate terpene synthases

• Min Li and
• Hui Tao

Beilstein J. Org. Chem. 2024, 20, 959–972, doi:10.3762/bjoc.20.86

• depyrophosphorylation, whereas class II TSs utilize a general acid (a key Asp residue) to protonate the terminal C=C bond or epoxide group to yield a tertiary carbocation. The highly reactive carbocation is then converted to different carbocation intermediates, facilitated by the hydrophobic pocket of the TSs, which

• TSs and three PTs to generate 4, 5 or geranylfarnesyl diphosphate (GFPP, 29, Figure 1), representative products 30–33 are shown in Figure 3a [28]. Notably, FgMS is a chimeric enzyme (PTTS) consisting of an N-terminal class I TS domain and a C-terminal GFPP synthase domain. Therefore, to block the

Three-component N-alkenylation of azoles with alkynes and iodine(III) electrophile: synthesis of multisubstituted N-vinylazoles

• Jun Kikuchi,
• Roi Nakajima and
• Naohiko Yoshikai

Beilstein J. Org. Chem. 2024, 20, 891–897, doi:10.3762/bjoc.20.79

• catalysis encompassed various azoles such as pyrazole, indazole, and (benzo)triazole, exhibiting high Z-selectivity. In addition, Cao et al. reported a gold-catalyzed addition of 5-substituted tetrazoles to terminal alkynes [11]. Analogous hydroazolation reactions of alkynes have also been achieved under

• difunctionalization reaction to afford the product 4ag in 62% yield. While sluggish, trimethylsilylacetylene was selectively azolated at the terminal position (see 4ah), which could be rationalized by the better stabilization of a partial positive charge at this position by the β-silyl substituent. Finally, an

• oxazolidinone-substituted ynamide also proved to undergo iodo(III)azolation in a regio- and stereoselective fashion to give the product 4ai in a moderate yield. Note that terminal alkynes such as phenylacetylene also took part in the reaction, albeit in a much-diminished yield (7% by 1H NMR; data not shown

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• provide a better overall understanding. The hydrochlorination of alkenes can be categorized into three main classes (Scheme 1; only a terminal alkene is shown as a substrate, although polysubstituted and conjugated alkenes can also serve as substrates). 1) Polar reactions: These involve the protonation of

• , 3.0 M in methanol, 3.0 M in 1-butanol, 2.0 M in diethyl ether, 3.0 M in cylopentyl methyl ether, 1.0 M in acetic acid. Terminal aliphatic alkenes, such as prop-1-ene (7) do not react with HCl gas at rt and pressures of 1 atm or less (Figure 3A) [37]. In contrast, higher pressures and temperatures

• broad generality and tolerates various sensitive functional groups, including aldehyde 45 and nitrile 46. However, electron-poor styrene, resulting in chloride 40, or terminal and 1,2-disubstituted alkenes forming chlorides 41–46 and cyclooctyl chloride (26) necessitated harsher reaction conditions. As

Synthesis and characterization of water-soluble C₆₀–peptide conjugates

• Yue Ma,
• Lorenzo Persi and
• Yoko Yamakoshi

Beilstein J. Org. Chem. 2024, 20, 777–786, doi:10.3762/bjoc.20.71

• of hydrophilic oligopeptide anchors (oligo-Lys, oligo-Glu, and oligo-Arg) were synthesized. A previously reported Prato reaction adduct of a biscarboxylic acid-substituted C60 derivative was subjected to a solid phase synthesis for amide formation with N-terminal amines of peptides on resin to

Synthesis of new representatives of A₃B-type carboranylporphyrins based on meso-tetra(pentafluorophenyl)porphyrin transformations

• Victoria M. Alpatova,
• Evgeny G. Rys,
• Elena G. Kononova and
• Valentina A. Ol'shevskaya

Beilstein J. Org. Chem. 2024, 20, 767–776, doi:10.3762/bjoc.20.70

• -dioxaoctane (21) and 1,13-diamino-4,7,10-trioxatridecane (22) in DMSO at 70 °C for 30 min to form amino-conjugates 23 and 24 in 71 and 84% yield, respectively, containing ethylene glycol linkers with terminal primary amino groups (Scheme 6). The presence of ethylene glycol residues in bioactive molecules is

Methodology for awakening the potential secondary metabolic capacity in actinomycetes

• Shun Saito and
• Midori A. Arai

Beilstein J. Org. Chem. 2024, 20, 753–766, doi:10.3762/bjoc.20.69

• carbonate and terminal olefin functionalities [50]. Thus, artificial methods of genetic engineering and chemistry also play an important role in the identification of novel secondary metabolites. Culture conditions Medium composition, pH, oxygen supply, light Simply modifying the culture conditions is an

Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins

• Zhongwei Hua,
• Nan Liu and
• Xiaohui Yan

Beilstein J. Org. Chem. 2024, 20, 741–752, doi:10.3762/bjoc.20.68

• moieties are attached to the terminal carboxyl groups of 1 sequentially or simultaneously. Besides GjUGTs, a few UGTs from C. sativus were also characterized. In addition to 1, 9 is also glycosylated to form picrocrocin (10), which is further transformed into safranal (12) by β-glucosidase [87]. Key

Chemoenzymatic synthesis of macrocyclic peptides and polyketides via thioesterase-catalyzed macrocyclization

• Senze Qiao,
• Zhongyu Cheng and
• Fuzhuo Li

Beilstein J. Org. Chem. 2024, 20, 721–733, doi:10.3762/bjoc.20.66

• terminal polyketide synthases (PKSs) in juvenimicin biosynthesis in 2017 [75], which presented a chance to accomplish the chemoenzymatic total syntheses of tylactone and the juvenimicins (Scheme 7). To generate an appropriately activated tylactone hexaketide intermediate 49, two key fragments, aldehyde 42

• tylactone hexaketides, such as NAC thioester and thiophenol ester 49, which serves as the precursor for downstream enzymatic assembly. Thiophenol ester 49 was accepted by the two terminal of tylosin PKS modules (TylGIV and TylGV) in vitro, which are responsible for the last four carbon atoms assembly and

Genome mining of labdane-related diterpenoids: Discovery of the two-enzyme pathway leading to (−)-sandaracopimaradiene in the fungus Arthrinium sacchari

• Fumito Sato,
• Terutaka Sonohara,
• Shunta Fujiki,
• Akihiro Sugawara,
• Yohei Morishita,
• Taro Ozaki and
• Teigo Asai

Beilstein J. Org. Chem. 2024, 20, 714–720, doi:10.3762/bjoc.20.65

• determined to be (−)-sandaracopimaradiene (Figure 3B). We then turned our attention to the individual function of these enzymes. With this aim, AsPS and AsCPS were expressed in Escherichia coli as N-terminal hexa-histidine-tagged proteins and purified by Ni-affinity chromatography (see Supporting Information

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

• Julien Borrel and
• Jerome Waser

Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64

• terminal azide, despite its implication in the synthesis of complex molecules [3][6]. Therefore, the development of a straightforward reaction to synthesize homopropargylic azides would be of general interest. The azido-alkynylation of alkenes would allow to generate the desired motif in a single step

New variochelins from soil-isolated Variovorax sp. H002

• Jabal Rahmat Haedar,
• Aya Yoshimura and
• Toshiyuki Wakimoto

Beilstein J. Org. Chem. 2024, 20, 692–700, doi:10.3762/bjoc.20.63

• structure – a linear hexapeptide with β-hydroxyaspartate and hydroxamate functional groups, serving in iron-binding coordination. Three new variochelins C–E (3–5) were characterized by varied fatty acyl groups at their N-termini; notably, 4 and 5 represent the first variochelins with N-terminal unsaturated

• -guanidino-3-hydroxy-2-methylheptanoate, indicating that the N-terminal fatty acyl group is a tetradecanoic acid in 2 (Figure 1 and Figure S10 in Supporting Information File 1). Therefore, compound 2 is concluded to be the known lipohexapeptide variochelin B [5]. Compound 3 has the chemical formula of

• C45H79O17N11, as suggested by the HRESIMS data (m/z 1044.5603 for the [M − H]− ion), indicating the loss of two methylene groups (C2H4) from 1. In addition, the MS/MS fragmentation profile of 3 was consistent with those of 1 and 2, except for the loss of 28 mass units in the N-terminal Nγ-acyl-γ-amino acid

Palladium-catalyzed three-component radical-polar crossover carboamination of 1,3-dienes or allenes with diazo esters and amines

• Geng-Xin Liu,
• Xiao-Ting Jie,
• Ge-Jun Niu,
• Li-Sheng Yang,
• Xing-Lin Li,
• Jian Luo and
• Wen-Hao Hu

Beilstein J. Org. Chem. 2024, 20, 661–671, doi:10.3762/bjoc.20.59

• allenes that were never used as substrates in interrupted radical Heck/allylic substitution reactions. As summarized in Scheme 3, unsaturated γ-AA derivatives were observed in this reaction albeit with poor stereoselectivity. Linear amines containing alkyl, hydroxy, and terminal alkenyl groups were

• [32][33][34][35][36][37][59][60][61][62], upon the loss of dinitrogen. The radical I further adds to the terminal position of 1,3-butadiene (2a) to produce hybrid allylPd radical II, which would exist in equilibrium with π-allyl complex III. Following the classical Tsuji–Trost reaction mechanism, a

Isolation and structure determination of a new analog of polycavernosides from marine Okeania sp. cyanobacterium

• Kairi Umeda,
• Naoaki Kurisawa,
• Ghulam Jeelani,
• Tomoyoshi Nozaki,
• Kiyotake Suenaga and
• Arihiro Iwasaki

Beilstein J. Org. Chem. 2024, 20, 645–652, doi:10.3762/bjoc.20.57

• polycavernosides. Keywords: macrolide glycoside; marine cyanobacterium; marine natural products; polycavernosides; terminal alkyne; Introduction In 1991, an outbreak of food poisoning caused by a species of red algae known as ‘Polycavernosa tsudai’ occurred in Guam, which resulted in killing of three people. Two

• HMBC δH 1.62 (H-23)/δC 84.6 (C-25), δH 2.18 (H-24)/δC 84.6 (C-25), and δH 2.18 (H-24)/δC 68.6 (C-26) revealed a terminal alkyne structure. Additionally, COSY correlations shown in Figure 2 revealed the side chain structure of 1 containing a terminal alkyne and a conjugated trans triene (C-15 to C-26