Synthesis of pyrrolo[3,2-d]pyrimidine-2,4(3H)-diones by domino C–N coupling/hydroamination reactions

• Ruben Manuel Figueira de Abreu,
• Robin Tiedemann,
• Peter Ehlers and
• Peter Langer

Beilstein J. Org. Chem. 2025, 21, 1010–1017, doi:10.3762/bjoc.21.82

• amino group. The corresponding fluorescence quantum yields were also strongly affected by the substitution pattern of the pyrrolouracils. Compounds 4k and 4l show very high fluorescence quantum yields of 83% and 71%, respectively, what might be reasoned by the strong donor ability of the NMe2-functional

Studies on the syntheses of β-carboline alkaloids brevicarine and brevicolline

• Benedek Batizi,
• Patrik Pollák,
• András Dancsó,
• Péter Keglevich,
• Gyula Simig,
• Balázs Volk and
• Mátyás Milen

Beilstein J. Org. Chem. 2025, 21, 955–963, doi:10.3762/bjoc.21.79

• -monomethylation of the primary amino group of compound 25 by alkylation with methyl iodide or by Eschweiler–Clarke reductive amination with formaldehyde and formic acid were unsuccessful, because the dimethylated byproduct was also formed, even when one equivalent alkylating agent was used. Finally, our efforts

Silver(I) triflate-catalyzed post-Ugi synthesis of pyrazolodiazepines

• Muhammad Hasan,
• Anatoly A. Peshkov,
• Syed Anis Ali Shah,
• Andrey Belyaev,
• Chang-Keun Lim,
• Shunyi Wang and
• Vsevolod A. Peshkov

Beilstein J. Org. Chem. 2025, 21, 915–925, doi:10.3762/bjoc.21.74

• ]. In 2015, García-Valverde and co-workers described an alternative synthesis of benzo[e][1,4]diazepines 6, exploring the nitro group of 2-nitrobenzoic acid as a masked amino group. The release was achieved through the post-Ugi reduction of the nitro group with SnCl2 triggering concomitant

Recent advances in controllable/divergent synthesis

• Jilei Cao,
• Leiyang Bai and
• Xuefeng Jiang

Beilstein J. Org. Chem. 2025, 21, 890–914, doi:10.3762/bjoc.21.73

• enhanced electrophilicity of palladium facilitates preferential coordination with the amino group and activates the alkyne to form the intermediate Int-14 instead of Int-14'. Subsequent nucleophilic cyclization generates intermediate Int-15. Following CO insertion, complex Int-16 is formed, and reductive

• the hydroxy group to form complex Int-17 and the amino group undergoes nucleophilic attack to generate Int-18. After CO insertion complex Int-19 is produced and reductive elimination ultimately affords the indolo[3,2-c]coumarin product 10. In 2023, the Garg group achieved the first example of

4-(1-Methylamino)ethylidene-1,5-disubstituted pyrrolidine-2,3-diones: synthesis, anti-inflammatory effect and in silico approaches

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Luc Van Meervelt,
• Do Thi Thao and
• Nguyen Minh Thong

Beilstein J. Org. Chem. 2025, 21, 817–829, doi:10.3762/bjoc.21.65

• coupling between the secondary amino proton and the proton resonance at 2.76 ppm (see Supporting Information File 1). Therefore, the doublet resonance signal at 2.76 ppm correlates to three protons from the methyl group (CH3) directly bonded to the nitrogen atom of the secondary amino group (NH

• -hybridized carbon atom directly bonded to the nitrogen atom of the secondary amino group of compound 5a. In the structure of each pyrrolidine-2,3-dione derivative 3a–e, there is an α,β-unsaturated ketone moiety in which the π systems of the C=C and C=O bonds could overlap each other to yield an extended

• a dihedral angle of 49.86(10) 86.22(11)° with the phenyl rings C6–C11 and C18–C23, respectively. The angle between both phenyl rings is 70.76(11)°. The stereochemistry around the double bond is Z, allowing an intramolecular N–H···O hydrogen bond between one of the carbonyl oxygen atoms and the amino

Synthesis of HBC fluorophores with an electrophilic handle for covalent attachment to Pepper RNA

• Raphael Bereiter and
• Ronald Micura

Beilstein J. Org. Chem. 2025, 21, 727–735, doi:10.3762/bjoc.21.56

• fluorophores that provide the parent HBC530 ((4-((2-hydroxyethyl)(methyl)amino)benzylidene)cyanophenylacetonitrile) stilbene core [7] but offer an electrophilic alkyl handle on the amino group replacing the original N-hydroxyethyl residue. Three of them have been applied in the cellular applications (Brc3HBC

Origami with small molecules: exploiting the C–F bond as a conformational tool

• Patrick Ryan,
• Ramsha Iftikhar and
• Luke Hunter

Beilstein J. Org. Chem. 2025, 21, 680–716, doi:10.3762/bjoc.21.54

• that features both an ester moiety and an amino group will be discussed later, in section 5 of this review [112]. 4 Sugars We have examined several classes of molecules of gradually increasing complexity, progressing from alkanes (section 1) to ethers (section 2) and then alcohols (section 3

• is that the amino group becomes less basic when an inductively electron-withdrawing fluorine atom is nearby. This effect can be exploited to adjust the charge-state of a drug molecule, which can help in optimising the drug’s target-binding and/or bioavailability [154][173][174][175][176][177][178

• their proximity to the amino group. But there is another aspect to the modulation of pKaH of amines by fluorine: conformation matters, too [182]. If the F–C–C–N alignment is gauche (as in 105, Figure 11), the pKaH will be lowered by ≈1 log unit compared to the non-fluorinated amine. However, if the F–C

Binding of tryptophan and tryptophan-containing peptides in water by a glucose naphtho crown ether

• Gianpaolo Gallo and
• Bartosz Lewandowski

Beilstein J. Org. Chem. 2025, 21, 541–546, doi:10.3762/bjoc.21.42

• tripeptides 2–7 consisting of one tryptophan and two alanine residues. We varied the position of the tryptophan in the peptide sequence, N-terminus in 2, middle of the chain in 3, and C-terminus in 4 to check if this affects their binding by 1. To probe the importance of the N-terminal amino group in the

Cryptophycin unit B analogues

• Thomas Schachtsiek,
• Jona Voss,
• Maren Hamsen,
• Beate Neumann,
• Hans-Georg Stammler and
• Norbert Sewald

Beilstein J. Org. Chem. 2025, 21, 526–532, doi:10.3762/bjoc.21.40

• chain length [21]. The exchange by an amino group showed a similar trend, however, N,N-dimethylation of the amino group again increased cytotoxicity significantly [20]. Nevertheless, this cryptophycin might only be conjugated via an ammonium-based self-immolative linker [22]. We envisioned the synthesis

• containing a dimethylamino motif did not require an additional protecting group, ring closure was performed through alkene cross metathesis, which has been accomplished reliably and with good yields for other cryptophycins [11][26][27]. However, for the synthesis of a cryptophycin with a monomethylated amino

• group in unit B a suitable protecting group, i.e., allyloxycarbonyl (Alloc), must be used. Since the presence of this allylic double bond would most likely interfere with a clean reaction outcome after alkene cross metathesis, we decided for a more classical ring-closure strategy through

Synthesis of N-acetyl diazocine derivatives via cross-coupling reaction

• Thomas Brandt,
• Pascal Lentes,
• Jeremy Rudtke,
• Michael Hösgen,
• Christian Näther and
• Rainer Herges

Beilstein J. Org. Chem. 2025, 21, 490–499, doi:10.3762/bjoc.21.36

• pH 7.4 compared to 41% in acetonitrile, while in acidic aqueous media a PSS of 62% E for the Z→E photoisomerization was observed. This is due to the complete protonation of the amino group converting it to an electron-deficient substituent. The thermal half-lives of 13 and 21 increase by a factor of

Red light excitation: illuminating photocatalysis in a new spectrum

• Lucas Fortier,
• Corentin Lefebvre and
• Norbert Hoffmann

Beilstein J. Org. Chem. 2025, 21, 296–326, doi:10.3762/bjoc.21.22

• , making them more oxidizing. Extended conjugation in cyanins (e.g., 53 and 54) further increases their oxidizing nature at the ground state. Overall, both central substitution and extended conjugation play crucial roles in determining the redox behavior of these dyes. Cyanins with an amino group on the

Streamlined modular synthesis of saframycin substructure via copper-catalyzed three-component assembly and gold-promoted 6-endo cyclization

• Asahi Kanno,
• Ryo Tanifuji,
• Satoshi Yoshida,
• Sota Sato,
• Saori Maki-Yonekura,
• Kiyofumi Takaba,
• Jungmin Kang,
• Kensuke Tono,
• Koji Yonekura and
• Hiroki Oguri

Beilstein J. Org. Chem. 2025, 21, 226–233, doi:10.3762/bjoc.21.14

• pathway leading to 13, we strategically designed 2,3-diaminobenzofuran 11 as a suitably functionalized cyclization precursor for the gold(I)-promoted hydroamination, considering the following three factors. Firstly, the appropriate trajectory of the secondary amino group in the benzofuran moiety is

Heteroannulations of cyanoacetamide-based MCR scaffolds utilizing formamide

• Marios Zingiridis,
• Danae Papachristodoulou,
• Despoina Menegaki,
• Konstantinos G. Froudas and
• Constantinos G. Neochoritis

Beilstein J. Org. Chem. 2025, 21, 217–225, doi:10.3762/bjoc.21.13

• installed amino group and a disubstituted amide group at the 2- and 3-positions, respectively, and reacting them with formamide (Scheme 1B). Those synthetic hubs can be rapidly accessed by cyanoacetamide-based MCRs, which is an interesting reaction type that gives access to privileged cores and has been

• the desired thienopyrimidones 5a–e, quinolinopyrimidones 6a–e and indolopyrimidones 7a–e, respectively, as reported in the literature [42][44]. In accordance with the reported mechanism, after the initial formylation of the amino group at position 2, an intramolecular nucleophilic attack by the NH

Cu(OTf)₂-catalyzed multicomponent reactions

• Sara Colombo,
• Camilla Loro,
• Egle M. Beccalli,
• Gianluigi Broggini and
• Marta Papis

Beilstein J. Org. Chem. 2025, 21, 122–145, doi:10.3762/bjoc.21.7

• 39 were prepared exploiting the multicomponent reaction by using aminonaphthalenes, CS2 and secondary amines. The mechanism involved the Ullmann-type coupling of the bromo(amino)naphthalene with the dithiocarbamate salt followed by intramolecular nucleophilic attack of the naphthalene amino group to

Recent advances in organocatalytic atroposelective reactions

• Henrich Szabados and
• Radovan Šebesta

Beilstein J. Org. Chem. 2025, 21, 55–121, doi:10.3762/bjoc.21.6

• organocatalyst C21 was studied in 2019 (Scheme 21) [44]. A broad range of aniline and phenol substrates was studied. The best results were accomplished with products containing a Boc-protected amino group on the aniline or 2-aminonaphthalene frame (66a–g), achieving very good yields and excellent

• results in one case, providing high cytotoxicity toward the MCF-7 cancer cell line. The stable axial chirality of the products 71 and 73 was confirmed by calculations of the rotational barriers ranging from 30.2 to 46.3 kcal/mol. Kinetic resolution by amino group protection of biaryls (R,S)-74a–r with

• present on the amino group of the 1,3-benzenediamine, lower yields were reported, and substituting the amino group in position 3 for an N-methylamino or N,N-dimethylamino group led to a reduction in the enantioselectivity. Shao et al. developed the first organocatalyzed atroposelective Friedländer

Non-covalent organocatalyzed enantioselective cyclization reactions of α,β-unsaturated imines

• Sergio Torres-Oya and
• Mercedes Zurro

Beilstein J. Org. Chem. 2024, 20, 3221–3255, doi:10.3762/bjoc.20.268

• derivatives 3 in yields up to 99%, up to 20:1 dr, and up to 99% ee [24]. This work represents the first enantioselective bifunctional catalytic inverse electron demand Diels–Alder reaction that occurs with a dual control of the dienophile HOMO and diene LUMO energies of the substrates. The amino group of the

Ceratinadin G, a new psammaplysin derivative possessing a cyano group from a sponge of the genus Pseudoceratina

• Shin-ichiro Kurimoto,
• Kouta Inoue,
• Taito Ohno and
• Takaaki Kubota

Beilstein J. Org. Chem. 2024, 20, 3215–3220, doi:10.3762/bjoc.20.267

• -labeled ʟ-phenylalanine [19]. Therefore, the cyano group in bromotyrosine alkaloids containing the phenylacetonitrile moiety is derived from the α-carbon and amino group of ʟ-tyrosine. On the other hand, the biosynthesis of nitrile with a cyanoformamide moiety remains unclear. Ceratinadin G (1) represents

Discovery of ianthelliformisamines D–G from the sponge Suberea ianthelliformis and the total synthesis of ianthelliformisamine D

• Sasha Hayes,
• Yaoying Lu,
• Bernd H. A. Rehm and
• Rohan A. Davis

Beilstein J. Org. Chem. 2024, 20, 3205–3214, doi:10.3762/bjoc.20.266

• cluster at m/z 477/479/481 [M + H]+. Similarly to compound 4, the 1H NMR (Table 1) and edited HSQC spectra of 5 displayed six methylene signals (δH 3.25, 2.92, 2.36, 1.79, 1.77). Additionally, a broad exchangeable proton (δH 8.35) was observed that was indicative of a protonated dialkylated amino group [7

• integrated for three protons and a triplet (δH 8.23) that were indicative of a protonated terminal amino group and a secondary amide functionality, respectively [7]. 13C NMR shifts and COSY correlations associated with the methylene signals of 7 enabled the assignment of an NH–(CH2)3–NH2 moiety, which was

Cyclodextrin-based rotaxanes for polymer materials: challenge on simultaneous realization of inexpensive production and defined structures

• Yosuke Akae

Beilstein J. Org. Chem. 2024, 20, 3026–3049, doi:10.3762/bjoc.20.252

• produce simple structured rotaxane species (Scheme 3) [46][47][48]. In this method, dodecanediamine and α-CD are mixed in water to form a pseudo[3]rotaxane (1), and the subsequent one-pot end-capping reaction driven by the amino group on the axle ends and substituted phenyl isocyanate produced [3]rotaxane

Tunable full-color dual-state (solution and solid) emission of push–pull molecules containing the 1-pyrindane moiety

• Anastasia I. Ershova,
• Sergey V. Fedoseev,
• Konstantin V. Lipin,
• Mikhail Yu. Ievlev,
• Oleg E. Nasakin and
• Oleg V. Ershov

Beilstein J. Org. Chem. 2024, 20, 3016–3025, doi:10.3762/bjoc.20.251

• group, a strong blue shift occurred down to 394 nm. The only exception was a solution of 1i in acetic acid, where two peaks were observed. Apparently, the weaker acetic acid caused just a partial protonation of the amino group, and the equilibrium shown in Scheme 2 was observed. This was evidenced by

Recent advances in transition-metal-free arylation reactions involving hypervalent iodine salts

• Ritu Mamgain,
• Kokila Sakthivel and
• Fateh V. Singh

Beilstein J. Org. Chem. 2024, 20, 2891–2920, doi:10.3762/bjoc.20.243

• this Li and Jiang, created an effective ball-milling process for the N-arylation of amines 38 with the assistance of diaryliodonium salts 16 (Scheme 15) [67]. The arylation of an amino group or nitrogen heterocycle occurred effectively when the reaction is performed under solvent-free conditions or

Synthesis of tricarbonylated propargylamine and conversion to 2,5-disubstituted oxazole-4-carboxylates

• Kento Iwai,
• Akari Hikasa,
• Kotaro Yoshioka,
• Shinki Tani,
• Kazuto Umezu and
• Nagatoshi Nishiwaki

Beilstein J. Org. Chem. 2024, 20, 2827–2833, doi:10.3762/bjoc.20.238

• -acylamine; oxazole; propargylamine; Introduction Propargylamine is an important motif in the synthesis of heterocyclic compounds [1][2][3][4] and drug discovery [5][6] due to its multifunctionality, which includes a basic and nucleophilic amino group, an electrophilic and dipolarophilic triple bond, and an

Synthesis and antimycotic activity of new derivatives of imidazo[1,2-a]pyrimidines

• Dmitriy Yu. Vandyshev,
• Daria A. Mangusheva,
• Khidmet S. Shikhaliev,
• Kirill A. Scherbakov,
• Oleg N. Burov,
• Alexander D. Zagrebaev,
• Tatiana N. Khmelevskaya,
• Alexey S. Trenin and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2024, 20, 2806–2817, doi:10.3762/bjoc.20.236

• -nitrogen atom. The second route involves the participation of an amino group which allows the formation of adducts 7 and 9 (routes A2 and B2). The intermediates formed then undergo subsequent tandem recyclization of succinimide/citraconimide fragments at the expense of one of the carbonyl groups and the

Synthesis of spiroindolenines through a one-pot multistep process mediated by visible light

• Francesco Gambuti,
• Jacopo Pizzorno,
• Chiara Lambruschini,
• Renata Riva and
• Lisa Moni

Beilstein J. Org. Chem. 2024, 20, 2722–2731, doi:10.3762/bjoc.20.230

• the reaction protonates the amino group, making the final cyclization less efficient. Finally, we have tried to extend the synthetic protocol to other benzo-fused N-heterocycles. We investigated the benzo-fused 7-membered nitrogen heterocycles, both for our previous experience in applying them in MCRs

Synthesis of fluoroalkenes and fluoroenynes via cross-coupling reactions using novel multihalogenated vinyl ethers

• Yukiko Karuo,
• Keita Hirata,
• Atsushi Tarui,
• Kazuyuki Sato,
• Kentaro Kawai and
• Masaaki Omote

Beilstein J. Org. Chem. 2024, 20, 2691–2703, doi:10.3762/bjoc.20.226

• 5l) could be introduced into 1a in 76% or 52% yields, respectively (Table 4, entries 10 and 11). Reactions using acetylenes possessing a hydroxy group, amino group and thiophene proceeded well (3m–o) (Table 4, entries 12–14). Hexa-1-yne 5p and cyclopropylacetylene (5q) afforded 3p and 3q

• -coupling between 1 derived from various phenols and 5a. Vinyl ethers 1b–d were converted into enynes 3t–v in 29–35% yields (Table 4, entries 19–21). The reaction using 1e, which bears an amino group on the benzene ring, did not complete despite requiring a long reaction time (Table 4, entry 22). Therefore