A versatile route towards 6-arylpipecolic acids

• Erich Gebel,
• Cornelia Göcke,
• Carolin Gruner and
• Norbert Sewald

Beilstein J. Org. Chem. 2025, 21, 1104–1115, doi:10.3762/bjoc.21.88

• well as an axial position for the methyl ester at C2. All spectra of the stereoisomer (2R,6S)-9 contain signals for a second data set. This phenomenon might be associated with cis-/trans-isomerism around the formamide bond. Maison et al. noted that a phenyl substituent at C6 of N-acyl pipecolic acid

• derivatives exclusively leads to a cis-amide bond [57]. Most noteworthy are the signals of both protons H2 and H6, which display a different coupling pattern and a notable shift around 1 ppm upfield for H2 and around 1 ppm downfield for H6. Examination of the coupling constants of both these protons shows

• . The co-existence of cis-/trans-isomers around the N-formyl bond instead of the proposed conformational isomers would not change the coupling pattern and can, therefore, be ruled out. A complete flip of the conformation is not likely due to the partial double bond between the formyl group and nitrogen

Salen–scandium(III) complex-catalyzed asymmetric (3 + 2) annulation of aziridines and aldehydes

• Linqiang Wang and
• Jiaxi Xu

Beilstein J. Org. Chem. 2025, 21, 1087–1094, doi:10.3762/bjoc.21.86

• of racemic and optically active functionalized cis-2,5-diaryloxazolidine derivatives [13][14][15][16]. Racemic cis-2,5-diaryloxazolidine derivatives were prepared under the catalysis of zinc triflate or nickel diperchlorate (Scheme 1a) [13][14]. Later, highly enantiomeric cis-2,5-diaryloxazolidine

• first reacted with diethyl 3-phenyl-1-(4-toluene)sulfonylaziridine-2,2-dicarboxylate (1a), affording cis-oxazolidines 3aa–aj in 43–84% yields and 37–98% ee. Obvious influences of electronic and steric effects on both the yields and enantioselectivities were observed. Aromatic aldehydes 2e and 2f with

Recent advances in synthetic approaches for bioactive cinnamic acid derivatives

• Betty A. Kustiana,
• Galuh Widiyarti and
• Teni Ernawati

Beilstein J. Org. Chem. 2025, 21, 1031–1086, doi:10.3762/bjoc.21.85

• using flow conditions, Kim and co-workers (2021) reported the cis–trans isomerization of α-functionalized stilbenes in a flow microreactor (Scheme 65B) [112]. The isomerization could be regioselectively controlled in an incredibly short time within milliseconds (247, 248) to give either the E-isomeric

• of the conjugated alkyne 374 to give cis-methyl cinnamate (375) in moderate yield via cobalt–hydride species (Scheme 82A) [139]. Similarly, Liu and co-workers (2023) utilized Ni to catalyze partial hydrogenation of conjugated alkynes to generate the corresponding trans-cinnamate esters 44 and 376 via

• –380 via an α-borylation–protodeborylaton mechanism involving intermediates 381 and 382 (Scheme 83A) [141]. On the one hand, Vilotijevic and co-workers (2021) reported a phosphine-mediated partial hydrogenation of conjugated alkynes using water as the hydrogen source to obtain the corresponding cis

Recent total synthesis of natural products leveraging a strategy of enamide cyclization

• Chun-Yu Mi,
• Jia-Yuan Zhai and
• Xiao-Ming Zhang

Beilstein J. Org. Chem. 2025, 21, 999–1009, doi:10.3762/bjoc.21.81

• cyclization to form products in high yields and excellent enantioselectivities. Notably, only a single diastereomer was produced in each case. The single-crystal X-ray crystallography revealed a cis-configuration for both the alkene and ketone substituents on the enamide, indicating that the intramolecular

Harnessing tethered nitreniums for diastereoselective amino-sulfonoxylation of alkenes

• Shyam Sathyamoorthi,
• Appasaheb K. Nirpal,
• Dnyaneshwar A. Gorve and
• Steven P. Kelley

Beilstein J. Org. Chem. 2025, 21, 947–954, doi:10.3762/bjoc.21.78

• compatible with our optimized protocols (Table 4). Earlier in the project, we had focused exclusively on substrates derived from trans-homo-allylic alcohols. We were thus pleased to find that a substrate synthesized from cis-3-hexen-1-ol was equally compatible and gave product in an excellent yield and

A convergent synthetic approach to the tetracyclic core framework of khayanolide-type limonoids

• Zhiyang Zhang,
• Jialei Hu,
• Hanfeng Ding,
• Li Zhang and
• Peirong Rao

Beilstein J. Org. Chem. 2025, 21, 926–934, doi:10.3762/bjoc.21.75

• simultaneously installing the hydroxy group at C30. The latter intermediate could in turn be derived from dienone 11 by an AcOH-interrupted Nazarov cyclization [32][33][34], thereby establishing the B ring with the desired all-cis stereochemical configuration, including the quaternary carbon at C10 and the

Silver(I) triflate-catalyzed post-Ugi synthesis of pyrazolodiazepines

• Muhammad Hasan,
• Anatoly A. Peshkov,
• Syed Anis Ali Shah,
• Andrey Belyaev,
• Chang-Keun Lim,
• Shunyi Wang and
• Vsevolod A. Peshkov

Beilstein J. Org. Chem. 2025, 21, 915–925, doi:10.3762/bjoc.21.74

• , obtaining a separable mixture of the major cis and minor trans diastereomers of the sp3-enriched pyrazolodiazepine 17. The relative configuration of the stereocenters in the major cis isomer of 17 was established via scXRD analysis. Both diastereomers of 17 were found to be amenable to chemoselective amide

• pyrazolo[1,5-a][1,4]diazepine core. aDetermined by 1H NMR spectroscopy analysis of crude reaction mixtures. bIsolated yield. Optimization reactions of the intramolecular post-Ugi heteroannulation.a Supporting Information Deposition Numbers 2410526 (for 16m) and 2441192 (for 17-cis) contain the

Development and mechanistic studies of calcium–BINOL phosphate-catalyzed hydrocyanation of hydrazones

• Carola Tortora,
• Christian A. Fischer,
• Sascha Kohlbauer,
• Alexandru Zamfir,
• Gerd M. Ballmann,
• Jürgen Pahl,
• Sjoerd Harder and
• Svetlana B. Tsogoeva

Beilstein J. Org. Chem. 2025, 21, 755–765, doi:10.3762/bjoc.21.59

• sphere. The phosphate ligands are in cis-position with respect to each other. The structure of 4 shows similarities to that of a BINOL-derived calcium phosphate complex that also crystallizes with four methanol ligands, creating an octahedral coordination sphere with phosphate ligands in cis-position [52

• ]. As observed earlier [53], cis/trans preferences in octahedral calcium complexes are influenced by small changes in sterics. Further details on the structure of 4 can be found in Supporting Information File 1. Complex 4 appeared to be a well-defined achiral model system for the catalyst combination

Origami with small molecules: exploiting the C–F bond as a conformational tool

• Patrick Ryan,
• Ramsha Iftikhar and
• Luke Hunter

Beilstein J. Org. Chem. 2025, 21, 680–716, doi:10.3762/bjoc.21.54

• planar conformation, whereas in the fluorinated macrocycle 49, the aryl ether moiety adopts an orthogonal conformation which necessitates substantial reorganisation elsewhere in the macrocycle including a cis-amide on the opposite side of the molecule. We now consider what happens if fluorine is

Total synthesis of (±)-simonsol C using dearomatization as key reaction under acidic conditions

• Xiao-Yang Bi,
• Xiao-Shuai Yang,
• Shan-Shan Chen,
• Jia-Jun Sui,
• Zhao-Nan Cai,
• Yong-Ming Chuan and
• Hong-Bo Qin

Beilstein J. Org. Chem. 2025, 21, 601–606, doi:10.3762/bjoc.21.47

• elimination was utilized to liberate the allyl group and to simultaneously construct the 6/5/6 tricyclic skeleton via an oxy-Michael addition affording (±)-simonsol C in 70% yield (Scheme 4). The spectral data were in agreement with the reported ones [4][15][16] and the cis relation between the protons at C5

Formaldehyde surrogates in multicomponent reactions

• Cecilia I. Attorresi,
• Javier A. Ramírez and
• Bernhard Westermann

Beilstein J. Org. Chem. 2025, 21, 564–595, doi:10.3762/bjoc.21.45

The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

• Rituparna Das and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

• referred to as α-glycosides are mostly also termed as 1,2-cis glycosides (except in the case of glycosides such as ᴅ-altrose, ᴅ-mannose, ᴅ-iodose, and ᴅ-talose with axial C-2 position), while the equatorial or β-glycosides are termed as 1,2-trans-glycosides with the glycosides mentioned above as exceptions

• [48]. The review will primarily be referring to axial or α-glycosides as 1,2-cis glycosides except for mannosides where the term β-mannosides will be used for 1,2-cis-mannoside configuration, respecting the complexity and novelty they bring to the world of synthetic glycochemistry. The spanning of the

• -benzylcarbamoyl group helped in the formation of 1,2-trans glycosides only without the formation of an acetoxonium ion, although it renders neighbouring group participation to stabilise the 1,2-cis triflate intermediate enabling the formation of 1,2-trans glycosides. This mechanistic protocol was suitably

Molecular diversity of the reactions of MBH carbonates of isatins and various nucleophiles

• Zi-Ying Xiao,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2025, 21, 286–295, doi:10.3762/bjoc.21.21

• successfully promoted reaction of tri(tert-butyl)phosphine and MBH carbonates of isatins in toluene at 80 °C for three hours. These conditions resulted in mixtures of conjugated triene cis/trans-isomers 7a–d and 8a–d with nearly 4:1 ratios (Table 2). It should be pointed out that similar conjugated trienes

Effect of substitution position of aryl groups on the thermal back reactivity of aza-diarylethene photoswitches and prediction by density functional theory

• Misato Suganuma,
• Daichi Kitagawa,
• Shota Hamatani and
• Seiya Kobatake

Beilstein J. Org. Chem. 2025, 21, 242–252, doi:10.3762/bjoc.21.16

• -withdrawing substituents on the N-aryl moieties enhanced the thermal stability of the Z-isomers while maintaining the advantageous photoswitching properties upon irradiation with red light [52]. The effect of substituents on the thermal cis–trans isomerization of azobenzenes has also been widely studied, and

Hypervalent iodine-mediated intramolecular alkene halocyclisation

• Charu Bansal,
• Oliver Ruggles,
• Albert C. Rowett and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 3113–3133, doi:10.3762/bjoc.20.258

• fluoride ion to displace PhI. In pathway B (bottom), the nitrogen is oxidised by the iodane, generating an electrophilic intermediate B. Nucleophilic attack by the double bond subsequently forms the 6-membered ring intermediate C, which is either immediately attacked by fluoride to form both cis and trans

• products or stabilised by the tosyl group and subsequently attacked to form only the cis product in an SN2 reaction. Liu and co-workers reported a palladium-catalysed intramolecular aminofluorination of unactivated alkenes [27] (Scheme 2) in the presence of PhI(OPiv)2, AgF and MgSO4 as an oxidant, source

• C‒F bond to give predominantly the trans product, but this pathway competes with a less favourable SN2 nucleophilic attack by fluorine to form the cis product. However, a mechanism entirely mediated by the I(III) HVI reagent, with the Pd(OAc)2 only acting as a Lewis acid to activate the HVI reagent

Cyclodextrin-based rotaxanes for polymer materials: challenge on simultaneous realization of inexpensive production and defined structures

• Yosuke Akae

Beilstein J. Org. Chem. 2024, 20, 3026–3049, doi:10.3762/bjoc.20.252

• (Figure 5A) [56]. In the structure, α-CD was located on the trans-azobenzene moiety before ultraviolet (UV) irradiation, after which it moved to the methylene moiety based on the cis-isomerization of the azobenzene by UV irradiation. After the azobenzene moiety was moved back to the trans-isomer via

• α-CD-based rotaxane comprising a stilbene axle that was synthesized by the Suzuki coupling reaction to light irradiation (Figure 6, right) [58]. In this structure, α-CD was first located on the trans-stilbene moiety, after which it moved to the benzene ring moiety via the cis-isomerization of the

gem-Difluorovinyl and trifluorovinyl Michael acceptors in the synthesis of α,β-unsaturated fluorinated and nonfluorinated amides

• Monika Bilska-Markowska,
• Marcin Kaźmierczak,
• Wojciech Jankowski and
• Marcin Hoffmann

Beilstein J. Org. Chem. 2024, 20, 2946–2953, doi:10.3762/bjoc.20.247

• substituent at nitrogen located in the opposite direction to the carbonyl group, while cisoid (cis 15a’ (16a’)) isomers featured a smaller substituent at nitrogen located in the opposite direction to the carbonyl group. We determined the quantitative ratio as well as the cis/trans configuration of isomers by

N-Glycosides of indigo, indirubin, and isoindigo: blue, red, and yellow sugars and their cancerostatic activity

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 2840–2869, doi:10.3762/bjoc.20.240

• isatin-N-glycosides derived from β-ᴅ-galactose, β-ᴅ-glucose, and β-ᴅ-xylose which might be due to their 1,2-trans configuration. An identical relative configuration (1,2-trans; 1,3-cis) is observed for the first three carbon atoms of β-ᴅ-galactose, β-ᴅ-glucose, and β-ᴅ-xylose. In contrast, for β-ᴅ

• -mannose and β-ʟ-rhamnose, the first three C-atoms possess a different relative configuration (1,2-cis; 1,3-cis). This difference cannot be explained at the moment. A possible explanation is based on the assumption that, during dimerization, the acetate group of the 1,2-trans-configured sugars interacts

Copper-catalyzed yne-allylic substitutions: concept and recent developments

• Shuang Yang and
• Xinqiang Fang

Beilstein J. Org. Chem. 2024, 20, 2739–2775, doi:10.3762/bjoc.20.232

• proceed smoothly, resulting in spiroindolenine derivatives with high yields and ee values (Scheme 45, 45a–j). They also conducted mechanism studies and believed that the designed cyclic cis-yne-allylic esters are crucial for the progress of the reaction. The distal yne-allylic substitution is considered

Photoredox-catalyzed intramolecular nucleophilic amidation of alkenes with β-lactams

• Valentina Giraldi,
• Giandomenico Magagnano,
• Daria Giacomini,
• Pier Giorgio Cozzi and
• Andrea Gualandi

Beilstein J. Org. Chem. 2024, 20, 2461–2468, doi:10.3762/bjoc.20.210

• , entry 1). Assignment of the relative configurations as cis or trans was achieved by 1H NMR analysis, considering the chemical shifts of the proton in the α-position of the β-lactam nitrogen atom and the geminal protons in the benzylic position (see Supporting Information File 1). The difference in the

• the cis-isomer. The optimal PC for the reaction was acridinium salt IV (Table 1, entry 1), while the Fukuzumi catalyst (I), commonly employed by Nicewicz et al., was less effective (Table 1, entry 9). 3CzClIPN, an organic dye belonging to the class of thermally activated delayed fluorescence (TADF

• intramolecular photoredox reaction. Photoredox-catalyzed intramolecular N-alkylation reactions of various β-lactams. The trans/cis dr was determined by 1H NMR analysis of the crude reaction mixture. Synthesis of the model substrate 14 and its photoredox-catalyzed intramolecular N-alkylation reaction. The trans

Hypervalent iodine-mediated cyclization of bishomoallylamides to prolinols

• Smaher E. Butt,
• Konrad Kepski,
• Jean-Marc Sotiropoulos and
• Wesley J. Moran

Beilstein J. Org. Chem. 2024, 20, 2455–2460, doi:10.3762/bjoc.20.209

• . Installing a geminal dimethyl group on the alkyl linker was anticipated to lead to an improvement in cyclization, however, very low conversion was observed and the product 7p was isolated in 10% yield. We then investigated the cyclization of cis-disubstituted alkene 3q and were delighted to observe that only

Synthesis and conformational analysis of pyran inter-halide analogues of ᴅ-talose

• Olivier Lessard,
• Mathilde Grosset-Magagne,
• Paul A. Johnson and
• Denis Giguère

Beilstein J. Org. Chem. 2024, 20, 2442–2454, doi:10.3762/bjoc.20.208

• approach from levoglucosan 1 (Figure 1a) [23]. Allopyranose inter-halides 4 incorporating the 2,3-cis, 3,4-cis relationship for the halogens were prepared via intermediates 2 and 3 from levoglucosan (1). Compounds 4 were the starting point to complex 2,3,4-trihalohexanetriols and 2,3,4,5

• ][25][26][27][28][29][30], such as the solution-state conformation of diastereomeric polyfluorohexitols [31]. Herein, we report the synthesis of pyran inter-halide analogues of ᴅ-talopyranose 6, integrating also the 2,3-cis, 3,4-cis relationship for the halogens, from known intermediate 5 (Figure 1b

• −200.55 ppm for 15. Talopyranose analogues 12–15 incorporate a 2,3-cis, 3,4-cis relationship for the halogens. We previously prepared a small set of trihalogenated allopyranose analogues that also included the 2,3-cis, 3,4-cis relationship for the halogens (Figure 1a) [23]. 19F NMR analysis of halogenated

Facile preparation of fluorine-containing 2,3-epoxypropanoates and their epoxy ring-opening reactions with various nucleophiles

• Yutaro Miyashita,
• Sae Someya,
• Tomoko Kawasaki-Takasuka,
• Tomohiro Agou and
• Takashi Yamazaki

Beilstein J. Org. Chem. 2024, 20, 2421–2433, doi:10.3762/bjoc.20.206

• products was concluded by the observed NOESY cross peaks between H2-H4 and H3-H4, clearly demonstrating the relationship between these three hydrogen atoms as cis. Formation of syn,syn-7a and -7b by the above tertiary amines would be mechanistically elucidated by the deprotonation of the most acidic H2

Asymmetric organocatalytic synthesis of chiral homoallylic amines

• Nikolay S. Kondratyev and
• Andrei V. Malkov

Beilstein J. Org. Chem. 2024, 20, 2349–2377, doi:10.3762/bjoc.20.201

• high (9:1 and >20:1), along with impressive enantioselectivity levels (92% and 98% ee). A slight loss of diastereoselectivity in the reaction of the PMP-imine with (Z)-crotyldioxaborinane 30 was attributed to the spontaneous isomerisation of the imine to the cis-isomer. The crotylboronates were

• synthesised from the respective cis and trans-butenes by deprotonation followed by reaction with triisopropylborate [27], therefore the presence of E isomer in the Z-product 30 cannot be excluded. Chiral BINOL-derived phosphoric acids have been known since the 1970s as industrially relevant chiral counterions

Hydrogen-bond activation enables aziridination of unactivated olefins with simple iminoiodinanes

• Phong Thai,
• Lauv Patel,
• Diyasha Manna and
• David C. Powers

Beilstein J. Org. Chem. 2024, 20, 2305–2312, doi:10.3762/bjoc.20.197

• unprotected alcohol is tolerated in our procedure, with product 3l delivered at 50% NMR yield; 3l is sensitive to column chromatography, and thus aziridine-opening to a cyclic ether was observed (31% isolated yield) during purification. Aziridination of cis- or trans-4-octene afforded aziridine 3m as a 1.3

• :1.0 trans/cis mixture in 72% and 64% yield, respectively. While many styrene derivatives polymerize in HFIP [44], 1,2-disubstituted styrene derivatives were sufficiently stable to engage in the developed aziridination reaction, with cis- or trans-β-methylstyrene 1n furnishing aziridine 3n as

• diastereomeric mixtures with comparable yields of 38% (1.0:2.0 trans/cis, from cis-1n) and 35% (1.7:1.0 trans/cis, from trans-1n). Olefins containing N-heteroaromatics such as phthalimide and pyridine underwent aziridination to give 3o (32% yield) and 3p (26% yield). Similarly, 1,4-cyclohexadiene was compatible