Entry to 2-aminoprolines via electrochemical decarboxylative amidation of N‑acetylamino malonic acid monoesters

• Olesja Koleda,
• Janis Sadauskis,
• Darja Antonenko,
• Edvards Janis Treijs,
• Raivis Davis Steberis and
• Edgars Suna

Beilstein J. Org. Chem. 2025, 21, 630–638, doi:10.3762/bjoc.21.50

• under Pd-catalyzed hydrogenolysis afforded diamino acid ester 14 (75% yield) that was likely formed by ring-opening of the unstable N-unprotected 2-aminoproline followed by the reduction of the open-chain imine tautomer. Likewise, the open-chain amino alcohol 15 was formed also upon the reduction of the

• ester moiety with LiBH4. In the meantime, the hydrogenolysis of the benzyl ester in dipeptide 16 proceeded smoothly and afforded carboxylic acid 17 in 81% yield (Scheme 4) [16]. Conclusion In summary, the developed electrochemical decarboxylative amidation of readily accessible malonic acid monoesters

Organocatalytic kinetic resolution of 1,5-dicarbonyl compounds through a retro-Michael reaction

• James Guevara-Pulido,
• Fernando González-Pérez,
• José M. Andrés and
• Rafael Pedrosa

Beilstein J. Org. Chem. 2025, 21, 473–482, doi:10.3762/bjoc.21.34

• described in the literature (Scheme 5) [41][42]. Treatment of a 3:1 mixture of the anti/syn-diastereoisomers of compound 3 with 1,3-propane dithiol in the presence of a small amount of scandium triflate [43] afforded compound 18, which was used in the next step without further purification. Hydrogenolysis

Facile preparation of fluorine-containing 2,3-epoxypropanoates and their epoxy ring-opening reactions with various nucleophiles

• Yutaro Miyashita,
• Sae Someya,
• Tomoko Kawasaki-Takasuka,
• Tomohiro Agou and
• Takashi Yamazaki

Beilstein J. Org. Chem. 2024, 20, 2421–2433, doi:10.3762/bjoc.20.206

• succeeded by the usual hydrogenolysis to furnish the carboxylic acid anti,syn-8a in 79% isolated yield and the lactone anti,syn-7b was recovered in 13% yield (Scheme 4) which was considered to be the reflection of the original composition of anti,syn-7a and -7b. The relative stereochemistry of anti,syn-8a

Access to 2-oxoazetidine-3-carboxylic acid derivatives via thermal microwave-assisted Wolff rearrangement of 3-diazotetramic acids in the presence of nucleophiles

• Ivan Lyutin,
• Vasilisa Krivovicheva,
• Grigory Kantin and
• Dmitry Dar’in

Beilstein J. Org. Chem. 2024, 20, 1894–1899, doi:10.3762/bjoc.20.164

• converted into the corresponding acids 4a,b by hydrogenolysis under mild conditions, which proceeded in quantitative yields (Scheme 4). It should be noted that this method of preparing β-lactam acids compares favorably with the alkaline hydrolysis of their methyl and ethyl esters, which does not always give

• ; reaction scale – 0.25 mmol; ascaled-up (1.5 mmol) yield. Negative results with several N-, O-, and C-nucleophiles and with diazo reagent 1m. Preparation of acids 4 by hydrogenolysis of benzyl esters and examples of acid 4a amidation. Supporting Information Deposition Number CCDC 2323689 (for 3t) contains

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

• conducted via catalytic hydrogenolysis, resulting in the formation of enaminoketones 32. Finally, enaminoketones were subjected to acid hydrolysis conditions facilitating ring closure and producing the spiro-2H-furan-3-ones 33 in moderate yield (Scheme 10). This procedure was also applied to norethisterone

New triazinephosphonate dopants for Nafion proton exchange membranes (PEM)

• Fátima C. Teixeira,
• António P. S. Teixeira and
• C. M. Rangel

Beilstein J. Org. Chem. 2024, 20, 1623–1634, doi:10.3762/bjoc.20.145

• ]methylphosphonate (10). The following hydrogenolysis under H2/Pd/C conditions in ethanol, afforded the desired diethyl (4-hydroxyphenyl)methylphosphonate (7), in an overall yield of 80%. The synthesis of diethyl [hydroxy(4-hydroxyphenyl)methyl]phosphonate (11) [55] started with the reaction of 4-hydroxybenzaldehyde

• ). Compound 15 reacted with diethyl phosphonate in the presence of a strong base (sodium methoxide) to afford diethyl [hydroxy(4-nitrophenyl)methyl]phosphonate (16) in 81% yield (Scheme 4). The hydrogenolysis of this compound under H2 on Pd/C afforded quantitatively diethyl [hydroxy(4-aminophenyl)methyl

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• . Finally, the benzyl-protecting groups in compound 7 were cleaved via hydrogenolysis, followed by co-evaporation of the resulting crude product in pyridine. This yielded a monopyridyl salt, setting the stage for the final lipid coupling and deprotection sequence. To establish the vital lipid diphosphate

One-pot nucleophilic substitution–double click reactions of biazides leading to functionalized bis(1,2,3-triazole) derivatives

• Hans-Ulrich Reissig and
• Fei Yu

Beilstein J. Org. Chem. 2023, 19, 1399–1407, doi:10.3762/bjoc.19.101

• transformation into divalent carbohydrate mimetics turned out to be a difficult task. We started the experiments with the hydrogenolysis of bicyclic 1,2-oxazin-4-ol 19 as simple model compound (Scheme 7). A methanol solution of 19 under an atmosphere of hydrogen was stirred for 17 h in the presence of palladium

• quantitatively available by sodium borohydride reduction of 7, we encountered the first problems. Under similar conditions of the hydrogenolysis the expected product 24 could be isolated as major component and characterized (Scheme 7, reaction 2), but the obtained sample contained unknown byproducts. It is

• other triazolyl-substituted aminopyran derivatives we encountered similar selectivity problems due to the sensitivity of benzylic bonds to the applied hydrogenolysis conditions [59]. Despite of the discouraging results with model compound 23 we nevertheless examined the reductive cleavage of bis(1,2,3

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• derivative 2.6. The treatment of 2.6 with trimethylamine produced an ammonium salt. A treatment with silver carbonate was applied to remove any traces of bromide salts. Then, the secondary alcohol was deprotected by hydrogenolysis to produce 2.7 (lyso-PAF). Finally, the acetylation of the secondary alcohol

• the alcoholate reacted with 1-iodohexadecane to produce 3.3 in 50% yield. The phosphocholine moiety was incorporated by using 2-bromoethyl dichlorophosphate as a key reagent and following a previously reported sequence [67]. The debenzylation by using hydrogenolysis conditions produced 3.5 in 75% to

• hydrogenolysis to produce 1-O-octadecyl-sn-glycerol (4.10). It must be noted that the authors, after the deprotection of the two alcohol functions of 4.7, attempted the direct alkylation of the primary alcohol with octadecyltosylate. However, a mixture of mono and dialkylation was formed and were separated by

CO₂ complexation with cyclodextrins

• Cecilie Høgfeldt Jessen,
• Jesper Bendix,
• Theis Brock Nannestad,
• Heloisa Bordallo,
• Martin Jæger Pedersen,
• Christian Marcus Pedersen and
• Mikael Bols

Beilstein J. Org. Chem. 2023, 19, 1021–1027, doi:10.3762/bjoc.19.78

• compounds were made by tosylation of the corresponding partially benzylated cyclodextrins, hydrogenolysis and base treatment (see Supporting Information File 1 for experimental details). Compounds 5 and 6 have previously been made by direct tosylation of α-cyclodextrin which is a shorter route [17]. However

Linker, loading, and reaction scale influence automated glycan assembly

• Marlene C. S. Dal Colle,
• Manuel G. Ricardo,
• Nives Hribernik,
• José Danglad-Flores,
• Peter H. Seeberger and
• Martina Delbianco

Beilstein J. Org. Chem. 2023, 19, 1015–1020, doi:10.3762/bjoc.19.77

• , photocleavage, hydrogenolysis of the remaining PGs, and purification (Figure 2C). The latter is commonly employed for compounds synthesized on L2 because of the poor stability of free-reducing glycans in basic conditions needed for the methanolysis step [33]. The isolated yields of the fully protected compound

Synthesis of medium and large phostams, phostones, and phostines

• Jiaxi Xu

Beilstein J. Org. Chem. 2023, 19, 687–699, doi:10.3762/bjoc.19.50

• -azaphosphocin-1(4H)-yl)acetate (4), respectively, in the presence of the Grubbs first generation catalyst via ring closing metathesis. The products 3 and 4 were further transformed to antitumor agents 5, 6, 9 and 10 through aminolysis with O-TMS hydroxylamine or hydrogenolysis followed by aminolysis with O-TMS

• -hexahydro-1,2-oxaphosphecine 2-oxide 26 in 70% yield. After the Pd-catalyzed hydrogenolysis, it was transformed to both cyclic ten-membered phostone 2-(4-methylphenyl)benzothiophene-fused 2-hydroxy-1,2-oxaphosphecane 2-oxide (27) in 40% yield and acyclic (4-(3-methyl-2-(4-methylphenyl)benzo[b]thiophen-4-yl

• )butyl)phosphonic acid (28) in 45% yield as a byproduct, which was generated from the Pd-catalyzed arylmethylic cleavage under hydrogenolysis conditions (Scheme 5) [22]. To avoid the formation of the acyclic byproduct, the same research group designed a new inhibitor with a reverse phosphonate bond

Combretastatins D series and analogues: from isolation, synthetic challenges and biological activities

• Jorge de Lima Neto and
• Paulo Henrique Menezes

Beilstein J. Org. Chem. 2023, 19, 399–427, doi:10.3762/bjoc.19.31

• provided the seco-acid 75. Employing the same Mitsunobu conditions previously described [35], the authors were able to obtain the macrolide 76 in 81% yield which was then subjected to deprotection to give compound 77 (Scheme 14). The synthesis of 2 from compound 77 was achieved after hydrogenolysis of the

• benzyl ether. Further double bond formation in compound 78 employing triiodoimidazole and PPh3 led to 2 (route A, 32% overall yield from 52). The synthesis of combretastatin D-1 (1) was achieved from the cyclodehydration of compound 77, followed by the hydrogenolysis of the benzyl ether 79 (route B

Synthesis, α-mannosidase inhibition studies and molecular modeling of 1,4-imino-ᴅ-lyxitols and their C-5-altered N-arylalkyl derivatives

• Martin Kalník,
• Sergej Šesták,
• Juraj Kóňa,
• Maroš Bella and
• Monika Poláková

Beilstein J. Org. Chem. 2023, 19, 282–293, doi:10.3762/bjoc.19.24

• in two steps from known ʟ-ribitol 1 [34] in good overall yield. Next, it was converted to the C-5 deoxygenated N-benzylpyrrolidine 6 via trityl ether cleavage, tosylation of the deprotected OH group, and reduction of the tosylate 5. Hydrogenolysis of the N-benzyl group in 6 followed by a removal of

• after hydrogenolysis and treatment with conc. HCl gave hydrochloride 10 (Scheme 1). The versatile intermediate 3 was further employed in the synthesis of the target compounds 17–20 (Scheme 2) homologated at the C-5 position. The transformation of pyrrolidine 3 to 13 included the replacement of the N

• -benzyl group with the Cbz group, trityl ether hydrolysis, oxidation of the liberated OH group, and stereoselective addition of MeMgBr to the resulting aldehyde functionality. Hydrogenolysis of the Cbz protecting group in 13 followed by N-alkylation afforded pyrrolidines 14–16 which after acidic

A study of the DIBAL-promoted selective debenzylation of α-cyclodextrin protected with two different benzyl groups

• Naser-Abdul Yousefi,
• Morten L. Zimmermann and
• Mikael Bols

Beilstein J. Org. Chem. 2022, 18, 1553–1559, doi:10.3762/bjoc.18.165

• . These methods are so useful because virtually any chemical modification at the deprotected sites can be made followed by global deprotection of the O-benzyl groups with hydrogenolysis. Recently, we observed a strong substituent effect when substituted benzyl groups were used in these reactions with

1,4,6,10-Tetraazaadamantanes (TAADs) with N-amino groups: synthesis and formation of boron chelates and host–guest complexes

• Artem N. Semakin,
• Ivan S. Golovanov,
• Yulia V. Nelyubina and
• Alexey Yu. Sukhorukov

Beilstein J. Org. Chem. 2022, 18, 1424–1434, doi:10.3762/bjoc.18.148

• shown in Scheme 2b and c. To access mixed oxime-hydrazone 5a, benzylamine was reacted with two equivalents of α-chlorohydrazone 9c to give bishydrazone 10, which was debenzylated by hydrogenolysis with Pd–C catalyst. The subsequent introduction of the oximinoalkyl unit was selectively achieved by

• . Hydrazinium dihydrochloride was isolated in some cases (confirmed by X-ray, mp, and FT-IR data) demonstrating the degradation of the heteroadamantane cage. Deprotection of Cbz derivatives by hydrogenation over Pd–C was more productive. Thus, hydrogenolysis of product 8b delivered the 1N,2O-TAAD derivative 15

Synthesis of C6-modified mannose 1-phosphates and evaluation of derived sugar nucleotides against GDP-mannose dehydrogenase

• Sanaz Ahmadipour,
• Alice J. C. Wahart,
• Jonathan P. Dolan,
• Laura Beswick,
• Chris S. Hawes,
• Robert A. Field and
• Gavin J. Miller

Beilstein J. Org. Chem. 2022, 18, 1379–1384, doi:10.3762/bjoc.18.142

• diffuse intermolecular C–H···O contacts involving the phosphate and acetyl oxygen atoms. Deprotection of 16 was completed in two steps, first using hydrogenolysis with Adam’s catalyst (PtO2), followed by removal of the acetate protecting groups with Et3N/H2O/MeOH, and furnished the target glycosyl 1

Substituent effect on TADF properties of 2-modified 4,6-bis(3,6-di-tert-butyl-9-carbazolyl)-5-methylpyrimidines

• Irina Fiodorova,
• Tomas Serevičius,
• Rokas Skaisgiris,
• Saulius Juršėnas and
• Sigitas Tumkevicius

Beilstein J. Org. Chem. 2022, 18, 497–507, doi:10.3762/bjoc.18.52

• with 3,6-di-tert-butylcarbazole according to the procedure reported by us previously [29]. In order to remove the methylthio group in tCbz-mPYR and to obtain the 2-unsubstituted pyrimidine derivative 1, a hydrogenolysis reaction employing Raney Ni was carried out. Efficient methods for the introduction

• pyrimidine–carbazole TADF emitters bearing different substituents in position 2 of the pyrimidine moiety were successfully prepared by using Liebeskind–Srogl cross-coupling, hydrogenolysis, oxidation reactions of 4,6-bis(3,6-di-tert-butyl-9-carbazolyl)-5-methyl-2-methylthiopyrimidine and following

Total synthesis of the O-antigen repeating unit of Providencia stuartii O49 serotype through linear and one-pot assemblies

• Tanmoy Halder and
• Somnath Yadav

Beilstein J. Org. Chem. 2021, 17, 2915–2921, doi:10.3762/bjoc.17.199

• and the benzyl groups were removed by hydrogenolysis using 10% Pd(OH)2/C in methanol at ambient temperature with a H2 balloon, which afforded the target trisaccharide 1 in 68% yield over three steps (Scheme 6). The structure of 1 was confirmed by several NMR spectroscopic techniques such as 1H NMR

Highly stereocontrolled total synthesis of racemic codonopsinol B through isoxazolidine-4,5-diol vinylation

• Lukáš Ďurina,
• Anna Ďurinová,
• František Trejtnar,
• Ľuboš Janotka,
• Lucia Messingerová,
• Jana Doháňošová,
• Ján Moncol and
• Róbert Fischer

Beilstein J. Org. Chem. 2021, 17, 2781–2786, doi:10.3762/bjoc.17.188

• hydrogenolysis conditions led only to the formation of several undesired byproducts. To our satisfaction when compound 12 was subjected to catalytic hydrogenation using Pd(OH)2/C in methanol [39], 2 was formed in 71% yield. Finally, (±)-codonopsinol B (1) was directly obtained from 12 in the yield of 58% (over

Progress and challenges in the synthesis of sequence controlled polysaccharides

• Giulio Fittolani,
• Theodore Tyrikos-Ergas,
• Denisa Vargová,
• Manishkumar A. Chaube and
• Martina Delbianco

Beilstein J. Org. Chem. 2021, 17, 1981–2025, doi:10.3762/bjoc.17.129

• could be converted into N-acetates upon reduction with tributyltin hydride and azobisisobutyronitrile (AIBN), and the N-Cbz groups were removed to liberate the free amino groups during hydrogenolysis over Pd/C [259]. A collection of well-defined COS with defined DP and PA was prepared by AGA [93][157

Chemical synthesis of C6-tetrazole ᴅ-mannose building blocks and access to a bioisostere of mannuronic acid 1-phosphate

• Eleni Dimitriou and
• Gavin J. Miller

Beilstein J. Org. Chem. 2021, 17, 1527–1532, doi:10.3762/bjoc.17.110

• % and exclusively β-selective [11]. Isomeric separation of this complex mixture was not completed at this stage and the material was next deprotected using hydrogenolysis to remove the benzyl groups. This furnished 20 in excellent yield (96%) as a 3:1 α/β mixture (δ 100.5 ppm [1JC1-H1 = 172 Hz, for the

• α-anomer]). Additionally, glycosylation of dibenzyl phosphate using the mixture 18/19 was successful and furnished the expected mixture of tetrazole N-regioisomers in 72% yield. These materials were not separated and instead exposed to hydrogenolysis conditions to deliver free ᴅ-manno C6-tetrazole 1

One-step synthesis of imidazoles from Asmic (anisylsulfanylmethyl isocyanide)

• Louis G. Mueller,
• Allen Chao,
• Embarek AlWedi and
• Fraser F. Fleming

Beilstein J. Org. Chem. 2021, 17, 1499–1502, doi:10.3762/bjoc.17.106

• to substituted imidazoles. Raney nickel hydrogenolysis was effective in interchanging the C4 anisylsulfanyl group for hydrogen (Scheme 3); attempted lithium–anisylsulfanyl exchange [19] or palladium- [22] or nickel- [23] anisylsulfanyl cross coupling was not successful. Raney nickel reduction of 7f

Double-headed nucleosides: Synthesis and applications

• Vineet Verma,
• Jyotirmoy Maity,
• Vipin K. Maikhuri,
• Ritika Sharma,
• Himal K. Ganguly and
• Ashok K. Prasad

Beilstein J. Org. Chem. 2021, 17, 1392–1439, doi:10.3762/bjoc.17.98

• with either uracil or N6-benzoyladenine via Vorbrüggen’s method of nucleobase coupling to produce the double-headed nucleosides 85 and 86. Catalytic hydrogenolysis of the iodinated double-headed nucleoside 85 gave the nucleoside 87 (Scheme 19) [59]. Horton and Tsai [13] synthesized double-headed

Synthesis of multiply fluorinated N-acetyl-D-glucosamine and D-galactosamine analogs via the corresponding deoxyfluorinated glucosazide and galactosazide phenyl thioglycosides

• Vojtěch Hamala,
• Lucie Červenková Šťastná,
• Martin Kurfiřt,
• Petra Cuřínová,
• Martin Dračínský and
• Jindřich Karban

Beilstein J. Org. Chem. 2021, 17, 1086–1095, doi:10.3762/bjoc.17.85

• -catalyzed hydrogenolysis in ethanol/acetic anhydride appeared to be a logical deprotection step [26], the desired fluoro sugars were contaminated with varying quantities of unidentified byproducts. However, clean debenzylation was achieved by first converting the azide to an acetamide on reaction with