Unraveling cooperative interactions between complexed ions in dual-host strategy for cesium salt separation

• Zhihua Liu,
• Ya-Zhi Chen,
• Ji Wang,
• Qingling Nie,
• Wei Zhao and
• Biao Wu

Beilstein J. Org. Chem. 2025, 21, 845–853, doi:10.3762/bjoc.21.68

• dual-host systems for selective ion separation. Keywords: anion binding; cesium extraction; dual-host strategy; ion-pair interaction; solid–liquid extraction; Introduction Ion-pair interaction, defined as the electrostatic attraction between a positively charged cation and a negatively charged anion

• interactions between K+ and C=O moieties [31], similar to these seen in the single crystal structures of KF and K2CO3 complexes. These provide a promising opportunity that can be used to identify the cooperative interaction underpinning complexed ions in dual-host strategy-based extraction. To do this, the

• ion-dipole interaction of the Li+ cation and carbonyl groups also contribute to the extraction. The negative electrostatic potential (δ−) of O=C is attributed to a high dipole moment of the urea unit (mono(urea): 3.95 D, bis(urea): 7.55 D) [34][35][36], which has been demonstrated to be capable of

4-(1-Methylamino)ethylidene-1,5-disubstituted pyrrolidine-2,3-diones: synthesis, anti-inflammatory effect and in silico approaches

• Nguyen Tran Nguyen,
• Vo Viet Dai,
• Luc Van Meervelt,
• Do Thi Thao and
• Nguyen Minh Thong

Beilstein J. Org. Chem. 2025, 21, 817–829, doi:10.3762/bjoc.21.65

• docking scores (DS) revealed a range of binding affinities, with values ranging from −8.55 kcal/mol (iNOS–DEX) to −9.51 kcal/mol (iNOS–5e). Notably, iNOS–5e exhibited the most favorable binding energy, suggesting it has the strongest interaction with the iNOS enzyme. Hydrogen bonding analysis demonstrated

• enhance its interaction with iNOS via the optimization of the hydrogen bond with Cys200. These results highlight the potential of compound 5e as a lead compound for further development in targeting iNOS-related pathologies. Experimental results have confirmed that compound 5e is a promising candidate for

Orthogonal photoswitching of heterobivalent azobenzene glycoclusters: the effect of glycoligand orientation in bacterial adhesion

• Leon M. Friedrich and
• Thisbe K. Lindhorst

Beilstein J. Org. Chem. 2025, 21, 736–748, doi:10.3762/bjoc.21.57

• , not only the ligand but also the carbohydrate binding region of the protein is flexible, allowing for modeling of the ligand–FimH interaction as a dynamic event [52][53]. The five best binding poses of each receptor–ligand complex obtained in IFD were then used in a binding pose metadynamics

• with FimH (Supporting Information File 1, Figures S19–S21). In addition to the π–π interaction of the CRD-bound mannose-projecting antenna of the EE isomer with Tyr48, the complex is stabilized by hydrogen bonds of the scaffold mannoside to Tyr48 and in case of the glucose moiety to Thr51, Ile52, and

• Arg92, Asn138, and Asn135 in the ZE isomer. Comparison of the EE and the ZZ isomers of the homobivalent glycocluster 6αMan3αMan 2 also shows very different orientations of the second, non CRD-bound antenna. In case of the EE isomer, the π–π interaction of the CRD-complexed glycoazobenzene antenna with

Origami with small molecules: exploiting the C–F bond as a conformational tool

• Patrick Ryan,
• Ramsha Iftikhar and
• Luke Hunter

Beilstein J. Org. Chem. 2025, 21, 680–716, doi:10.3762/bjoc.21.54

• rotamers have different energies. When the C–F bonds are aligned gauche, the vacant σ* orbital of each C–F bond is able to mix with the filled σ orbital of an adjacent C–H bond, and this hyperconjugative interaction stabilises the gauche conformer (III, Figure 2). The anti conformer does not benefit from

• happens if fluorine is introduced onto one of the carbons that is directly attached to oxygen (Figure 6). This makes possible a hyperconjugative interaction between a lone pair on oxygen and the σ* orbital of the C–F bond (I, Figure 6) [76]. This interaction biases the rotational profile about the O–C(F

• ]. Glycosylation reactions (e.g., 63 → 65 and 64 → 66, Figure 9) proceed via an oxocarbenium intermediate. If fluorine is located at C-2, an electrostatic attraction might be expected between the partially negative fluorine and the positively charged C=O+ moiety, and this interaction would favour one of the half

Asymmetric synthesis of fluorinated derivatives of aromatic and γ-branched amino acids via a chiral Ni(II) complex

• Maurizio Iannuzzi,
• Thomas Hohmann,
• Michael Dyrks,
• Kilian Haoues,
• Katarzyna Salamon-Krokosz and
• Beate Koksch

Beilstein J. Org. Chem. 2025, 21, 659–669, doi:10.3762/bjoc.21.52

• , interaction and function. Furthermore, the synthesis of both isomers of trifluoroleucine was described. (2S,4R)-Trifluoroleucine could be isolated on a milligram-scale in good yields and excellent enantiomeric purities, representing a viable synthetic route for these building blocks adding another strategy to

Recent advances in allylation of chiral secondary alkylcopper species

• Minjae Kim,
• Gwanggyun Kim,
• Doyoon Kim,
• Jun Hee Lee and
• Seung Hwan Cho

Beilstein J. Org. Chem. 2025, 21, 639–658, doi:10.3762/bjoc.21.51

• -fold. These observations supported the hypothesis that the crown ether effectively disrupts the interaction between the alkali metal cation and fluorine atom, thereby decreasing the rate of β-F elimination. This asymmetric copper-catalyzed protocol represents one of the rare examples that allows to

• energy compared to (S,S)-TS9. Both transition states demonstrated a lithium center's coordination involving bromide, benzoate, and ligand oxygen atoms. The (S,R)-TS8 transition state exhibited a significantly shorter Li–Br interaction distance (2.81 Å compared to 3.74 Å in (S,S)-TS9), offering

Study of the interaction of 2H-furo[3,2-b]pyran-2-ones with nitrogen-containing nucleophiles

• Constantine V. Milyutin,
• Andrey N. Komogortsev and
• Boris V. Lichitsky

Beilstein J. Org. Chem. 2025, 21, 556–563, doi:10.3762/bjoc.21.44

• , interaction with dinucleophiles results in recyclization accompanied by opening of the furan ring. Relied on the aforementioned process a general method for the synthesis of substituted pyrazol-3-ones with allomaltol fragment was designed. Structures of representatives of all obtained products were

• biological activity [1][2][3]. Among the numerous approaches using considered furanones as starting compounds the recyclization processes are of significant interest [4][5]. The important subclass of such synthetic methods is the interaction with nitrogen-containing reagents. In this case depending on the

• pyrrolones such interaction can lead to pyridazinone systems [10][11]. Despite on the plenty of reactions with nitrogen-containing nucleophiles there is only one example of recyclization using furanone with a carbonyl group at position 3 (Scheme 1a, previous work) [6]. However, no work on this type of

Asymmetric synthesis of β-amino cyanoesters with contiguous tetrasubstituted carbon centers by halogen-bonding catalysis with chiral halonium salt

• Yasushi Yoshida,
• Maho Aono,
• Takashi Mino and
• Masami Sakamoto

Beilstein J. Org. Chem. 2025, 21, 547–555, doi:10.3762/bjoc.21.43

• of its unique interaction in organic synthesis. Chiral halonium salts have been found to have strong halogen-bonding-donor abilities and work as powerful asymmetric catalysts. Recently, we have developed binaphthyl-based chiral halonium salts and applied them in several enantioselective reactions

• ; chiral halonium salt; contiguous stereocenters; halogen bonding; Mannich reaction; Introduction Halogen bonding (XB) has attracted intense research attention for its unique interaction between halogen atoms and electron-rich substituents [1]. XB has been applied to various fields of chemistry, such as

• phenyl- or trityl-substituted 7c and 7d yielded products with decreased enantioselectivities, likely due to the inhibition of the interaction between the imines and the chiral catalyst by hydrogen and/or halogen bonding. From these observations, the substituent on the 1-position strongly affected the

Binding of tryptophan and tryptophan-containing peptides in water by a glucose naphtho crown ether

• Gianpaolo Gallo and
• Bartosz Lewandowski

Beilstein J. Org. Chem. 2025, 21, 541–546, doi:10.3762/bjoc.21.42

• protons of 1 shifted downfield and a marginal downfield shift of several crown ether protons as well as H-1 and H-3 of the glucopyranose was also observed. These observations suggest that the main interaction between 1 and H-Trp-OH is the π–π stacking between the naphthalene unit of 1 and the indole

• extent. The receptor could instead potentially form H-bonds via its OH functionalities with the amide groups adjacent to the Trp residue in the peptide. The favourable negative entropy of the interaction between 1 and the tripeptides 2–7 suggests a significant contribution of the hydrophobic effect to

Vinylogous functionalization of 4-alkylidene-5-aminopyrazoles with methyl trifluoropyruvates

• Judit Hostalet-Romero,
• Laura Carceller-Ferrer,
• Gonzalo Blay,
• Amparo Sanz-Marco,
• José R. Pedro and
• Carlos Vila

Beilstein J. Org. Chem. 2025, 21, 533–540, doi:10.3762/bjoc.21.41

• . Considering the high diastereoselectivity observed both in the presence and absence of the squaramide catalyst, we propose a plausible mechanism (Scheme 3) that involves hydrogen bonding activation of the methyl trifluoropyruvate by the NH₂ group of the aminopyrazole. This interaction directs the attack of

Deep-blue emitting 9,10-bis(perfluorobenzyl)anthracene

• Long K. San,
• Sebastian Balser,
• Brian J. Reeves,
• Tyler T. Clikeman,
• Yu-Sheng Chen,
• Steven H. Strauss and
• Olga V. Boltalina

Beilstein J. Org. Chem. 2025, 21, 515–525, doi:10.3762/bjoc.21.39

• photochemical reaction. Its structure was elucidated by NMR spectroscopy and single crystal X-ray diffractometry. The latter revealed no π–π interaction between neighboring ANTH cores. A combination of high photoluminescence quantum yield (PLQY) of 0.85 for 9,10-ANTH(BnF)2, its significantly improved

Synthesis of N-acetyl diazocine derivatives via cross-coupling reaction

• Thomas Brandt,
• Pascal Lentes,
• Jeremy Rudtke,
• Michael Hösgen,
• Christian Näther and
• Rainer Herges

Beilstein J. Org. Chem. 2025, 21, 490–499, doi:10.3762/bjoc.21.36

• designing a photoswitchable drug is to place the switch at a position in the pharmacophore that allows switching of the biological effect by irradiation with light without greatly reducing the overall activity by unselective interference with the inhibitor–receptor interaction. This is a difficult task

• efficiency. In any case the light-induced geometry change via isomerization should selectively control the interaction between the inhibitor and the receptor [21]. Currently there is only one example reported in the literature for the incorporation of N-acetyl diazocines into biologically active molecules

Photomechanochemistry: harnessing mechanical forces to enhance photochemical reactions

• Francesco Mele,
• Ana M. Constantin,
• Andrea Porcheddu,
• Raimondo Maggi,
• Giovanni Maestri,
• Nicola Della Ca’ and
• Luca Capaldo

Beilstein J. Org. Chem. 2025, 21, 458–472, doi:10.3762/bjoc.21.33

• transform molecules. Intriguingly, photocatalysts typically absorb harmless visible light and can be chosen ad hoc to trigger the desired chemistry. Indeed, the photocatalyst–substrate interaction can occur via energy transfer [4][5][6][7][8], single-electron transfer [9][10][11][12], or hydrogen-atom

• photomechanochemistry. One potential solution to address this issue has been the introduction of twin-screw extruders [81]. However, it remains uncertain whether this approach can be effectively adapted for use in photomechanochemical processes. Such dedicated machinery could enable a synergistic interaction between

Unraveling aromaticity: the dual worlds of pyrazole, pyrazoline, and 3D carborane

• Zahra Noori,
• Miquel Solà,
• Clara Viñas,
• Francesc Teixidor and
• Jordi Poater

Beilstein J. Org. Chem. 2025, 21, 412–420, doi:10.3762/bjoc.21.29

• of the aromatic cage causes the aromaticity of the former to be vanished. Such ineffective overlap has been proven by means of a model system derived from pyrazoleCC in which the C–N and C–C bonds linking the carborane to the pyrazole have been broken and its interaction has been analyzed by means of

• a Kohn–Sham molecular orbital analysis together with an energy decomposition analysis (Figure S1 in Supporting Information File 1). To form the broken bonds, both fragments have two unpaired electrons (at their triplet state). The interaction between both fragments amounts to −227.9 kcal mol−1

• , mainly driven by the very attractive orbital interaction (∆Eoi = −543.7 kcal mol−1) due to the favorable interaction between the two single-occupied molecular orbitals (SOMO) of each fragment to form the two broken bonds. Such strong interaction is supported by large overlaps between these SOMO of each

The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

• Rituparna Das and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

• 9-anthracenylmethyl group in the C-2 position which rendered neighbouring group participation effectively via a favourable π–π interaction between the p-orbitals of the stabilised oxonium ion intermediate and the aromatic ring of the protecting group to yield 1,2-trans selective products. Increasing

Synthesis, structure, ionochromic and cytotoxic properties of new 2-(indolin-2-yl)-1,3-tropolones

• Yurii A. Sayapin,
• Eugeny A. Gusakov,
• Inna O. Tupaeva,
• Alexander D. Dubonosov,
• Igor V. Dorogan,
• Valery V. Tkachev,
• Anna S. Goncharova,
• Gennady V. Shilov,
• Natalia S. Kuznetsova,
• Svetlana Y. Filippova,
• Tatyana A. Krasnikova,
• Yanis A. Boumber,
• Alexey Y. Maksimov,
• Sergey M. Aldoshin and
• Vladimir I. Minkin

Beilstein J. Org. Chem. 2025, 21, 358–368, doi:10.3762/bjoc.21.26

• -methylquinazolinones [3], 2-methylbenzoxazinones [4], and 2-methylbenzoxa(thia)zoles [5] the interaction with sterically hindered 1,2-benzoquinones and 3,4,5,6-tetrachloro-1,2-benzoquinone proceeds with the expansion of the o-quinone ring and results in 2-hetaryl-substituted 1,3-tropolones 1 (Scheme 1), which exhibit

• interaction of 2,3,3-trimethylindolenine with 3,5-di(tert-butyl)-1,2-benzoquinone leads to the formation of indolo[1,2-a]indoline derivatives [23], while the presence of a nitro group in 4,6-di(tert-butyl)-3-nitro-1,2-benzoquinone the reaction with 2,3,3-trimethylindolenine leads to an o-quinone ring

• excess of quinone 3 leads to the formation of 2-(indolin-2-yl)-4,5,6,7-tetrachloro-1,3-tropolones 8a,b as final products. The detailed reaction mechanism in acetic acid solution was studied by the PBE0/6-311+G(d,p) method on the example of the interaction of 2-methylquinolines and 2-methylbenzazoles with

Synthesis of new condensed naphthoquinone, pyran and pyrimidine furancarboxylates

• Kirill A. Gomonov,
• Vasilii V. Pelipko,
• Igor A. Litvinov,
• Ilya A. Pilipenko,
• Anna M. Stepanova,
• Nikolai A. Lapatin,
• Ruslan I. Baichurin and
• Sergei V. Makarenko

Beilstein J. Org. Chem. 2025, 21, 340–347, doi:10.3762/bjoc.21.24

• ] (Scheme 1). In turn, naphtho[2,3-b]furan-4,9-diones containing an aromatic substituent in the third position can be obtained as a result of the interaction of gem-bromonitroalkenes with 2-hydroxynaphthalene-1,4-dione [17][18][19] (Scheme 1). Furo[2,3-d]pyrimidin-4(3H)-ones are obtained on the basis of

• furoamines [20][21], as well as by the interaction of pyrimidinols with α-halocarbonyl compounds [22], nitroalkenes [23] or gem-chloronitroalkenes [21][24][25] (Scheme 2). At the same time, the construction of furan-containing pyranopyrans and pyranochromenes in the literature is represented only by the

• furancarboxylates based on the interaction of alkyl 3-bromo-3-nitroacrylates [31] with carbo- and heterocyclic CH-acids of the naphthoquinone, pyran, and pyrimidine series. Results and Discussion We have proposed a synthesis of dihydronaphthofuran-3-carboxylates based on the interaction of alkyl 3-bromo-3

Three-component reactions of conjugated dienes, CH acids and formaldehyde under diffusion mixing conditions

• Dmitry E. Shybanov,
• Maxim E. Kukushkin,
• Eugene V. Babaev,
• Nikolai V. Zyk and
• Elena K. Beloglazkina

Beilstein J. Org. Chem. 2025, 21, 262–269, doi:10.3762/bjoc.21.18

• adducts of formaldehyde condensation are formed under milder conditions and are highly reactive, which is important for further synthetic transformations. However, due to the high carbonyl reactivity of formaldehyde, its interaction with active methylene compounds is often complicated by polycondensation

• Interaction of 1,3-diketone 1 with formaldehyde First, we investigated the ability of formaldehyde to interact with 1,3-diketone 1 using the diffusion mixing technique. For this purpose, we carried out a series of reactions in a very simple device consisting of a large vial with formalin, inside which we

• participation. Interaction of diketone 1 with formaldehyde under the diffusion mixing conditions. Products of three-component reactions of methylene derivatives, formaldehyde and various dienes. Proposed mechanism for the formation of compounds 8 and 9 in the presence of ʟ-proline. Interconversion of

Streamlined modular synthesis of saframycin substructure via copper-catalyzed three-component assembly and gold-promoted 6-endo cyclization

• Asahi Kanno,
• Ryo Tanifuji,
• Satoshi Yoshida,
• Sota Sato,
• Saori Maki-Yonekura,
• Kiyofumi Takaba,
• Jungmin Kang,
• Kensuke Tono,
• Koji Yonekura and
• Hiroki Oguri

Beilstein J. Org. Chem. 2025, 21, 226–233, doi:10.3762/bjoc.21.14

• three base pairs, predominantly 5’-GGC-3’ and 5’-GGG-3’ [12][13]. Notably, a bis-phenol type unnatural analog 3, composed of the C5 deoxy A-ring bearing a phenolic hydroxy group at C8, presumably as a HB donor upon interaction with nucleic acids, exhibits superior DNA alkylation capability compared to

Quantifying the ability of the CF₂H group as a hydrogen bond donor

• Matthew E. Paolella,
• Daniel S. Honeycutt,
• Bradley M. Lipka,
• Jacob M. Goldberg and
• Fang Wang

Beilstein J. Org. Chem. 2025, 21, 189–199, doi:10.3762/bjoc.21.11

• results demonstrate the reliability of this relatively efficient computational approach for predicting the HB donation ability of CF2H-containing molecules. We further conducted natural bond orbital (NBO) [56] second-order perturbation analysis [57] to estimate the interaction energies (ELP→σ*) of the

• technique can be employed as a general approach for quantifying the energetics of HB interaction-enabled binding processes. Additionally, the free energies of HB complexation calculated at the PCM(MeCN)-M06-2X/6-31+G(d,p) level correlate well with our experimental data, allowing for binding affinity

• predictions. Lastly, we found a linear relationship between ΔδDMSO–CDCl3 or ΔδDMSO–CD3NO2 and hyperconjugative Me3PO(LP)→σ*H–CF2Ar interaction energies, providing a quick and feasible estimation of the intrinsic HB donation ability of the CF2H moiety. Further studies of the nature of hydrogen bonding

Hydrogen-bonded macrocycle-mediated dimerization for orthogonal supramolecular polymerization

• Wentao Yu,
• Zhiyao Yang,
• Chengkan Yu,
• Xiaowei Li and
• Lihua Yuan

Beilstein J. Org. Chem. 2025, 21, 179–188, doi:10.3762/bjoc.21.10

• molar ratio observed in ESI experiments. These inspiring results prompted us to further examine the interaction between host H1 and G1 by 1H NMR spectroscopy. Our prior experience with cyclo[6]aramide has confirmed binding to the cationic guest [49]. Indeed, addition of compound H1 to the guest solution

• between hydrogen atoms of G1 and the nearby phenyl groups of H2, with a distance of 2.7–2.9 Å (Figure 3a and Figure 3b). These results provided conclusive evidence for the 2:2 recognition mode through interaction of two guests with two macrocycles. With the 2:2 host–guest complexation pattern in mind, a

Nickel-catalyzed cross-coupling of 2-fluorobenzofurans with arylboronic acids via aromatic C–F bond activation

• Takeshi Fujita,
• Haruna Yabuki,
• Ryutaro Morioka,
• Kohei Fuchibe and
• Junji Ichikawa

Beilstein J. Org. Chem. 2025, 21, 146–154, doi:10.3762/bjoc.21.8

• successfully synthesize a range of 2-arylbenzofurans with various substituents. The reaction, which proceeded under mild conditions, involved β-fluorine elimination from nickelacyclopropanes formed by the interaction of 2-fluorobenzofurans with zero-valent nickel species. This protocol facilitates orthogonal

• -arylbenzofuran 3ab (Table 2, entry 4) compared to that of 1a (X = F, quant.). The strong interaction between fluorine and boron in H likely facilitates β-fluorine elimination and transmetallation. Thus, the considerably different result observed with 1a is attributed to the distinct mechanistic aspects of the

Cu(OTf)₂-catalyzed multicomponent reactions

• Sara Colombo,
• Camilla Loro,
• Egle M. Beccalli,
• Gianluigi Broggini and
• Marta Papis

Beilstein J. Org. Chem. 2025, 21, 122–145, doi:10.3762/bjoc.21.7

• begins with a nucleophilic attack of hydrazine on the aldehyde, activated by the copper salt, to give the corresponding hydrazone XXVIII. Subsequently, the formation of a Mannich-type intermediate XXIX was hypothesized by interaction between the hydrazone and the alkene mediated by Cu(OTf)2 coordination

Recent advances in organocatalytic atroposelective reactions

• Henrich Szabados and
• Radovan Šebesta

Beilstein J. Org. Chem. 2025, 21, 55–121, doi:10.3762/bjoc.21.6

• , previous findings from the literature, and experimental results, a reaction mechanism was proposed [46]. Hydrogen bonding as well as π–π interaction with the catalyst (R)-C22 activates both substrates in the stable intermediate Int-35. This stabilized state ensures the concerted control of

• (Scheme 33) [58]. Axially chiral products 106 were prepared in very high yields and exquisite enantiomeric purities. The presence of a methyl group in the aniline ring's ortho position proved to have a negative effect on the enantioselectivity, presumably due to the unfavorable steric interaction with the

• between the ketomalonate and organocatalyst Int-68 were shown as the pivotal interaction that formed the chiral pocket for the induction of chirality. Nucleophilic addition followed by rearomatization of the pyrrole ring and protonation of the oxygen forms the axially chiral arylpyrrole 237. The

Hot shape transformation: the role of PSar dehydration in stomatocyte morphogenesis

• Remi Peters,
• Levy A. Charleston,
• Karinan van Eck,
• Teun van Berlo and
• Daniela A. Wilson

Beilstein J. Org. Chem. 2025, 21, 47–54, doi:10.3762/bjoc.21.5

• , Figures S13 and S14 showing a signal decrease with increased temperature, demonstrating a decrease of interaction with the solvent D2O. After replacing PEG with PSar in the self-assembled structures we also show that the osmotic pressure can be induced by PSar in similar fashion as with PEG. Hence