Bioinformatic prediction of the stereoselectivity of modular polyketide synthase: an update of the sequence motifs in ketoreductase domain

• Changjun Xiang,
• Shunyu Yao,
• Ruoyu Wang and
• Lihan Zhang

Beilstein J. Org. Chem. 2024, 20, 1476–1485, doi:10.3762/bjoc.20.131

• stereochemistry. However, the reliability and applicability of these prediction methods have not been thoroughly assessed. In this study, we conducted a comprehensive bioinformatic analysis of 1,762 KR sequences from cis-AT PKSs to reevaluate the residues involved in conferring stereoselectivity. Our findings

• adopted, the prediction accuracy and the applicable range of these conserved motifs remain elusive, and not a few exceptions to these prediction rules have been reported (Figure 1c). For instance, the stereoselectivity of KR7 of ibomycin [12], KR15 of neaumycin B [14], and KR7 and KR10 of rifamycin [18

• evaluate the sequence–stereoselectivity relationship of KRs, here we have collected 1,762 KR sequences from modular cis-AT PKS gene clusters, whose product structures have been verified using spectroscopic and/or chemical methods. We reveal that the previously identified conserved motifs are best

Generation of alkyl and acyl radicals by visible-light photoredox catalysis: direct activation of C–O bonds in organic transformations

• Mithu Roy,
• Bitan Sardar,
• Itu Mallick and
• Dipankar Srimani

Beilstein J. Org. Chem. 2024, 20, 1348–1375, doi:10.3762/bjoc.20.119

• using tertiary alkyl oxalates and aryl bromides (Scheme 10). This is achieved through the synergistic combination of photoredox and nickel catalysis. This approach facilitates the formation of diverse trisubstituted olefins with outstanding regioselectivity and syn-stereoselectivity. The proposed

• achieving good syn-stereoselectivity. In 2019, using a similar concept, they reported 1,2-alkylarylation of alkenes with alkyl oxalates and aryl bromides under visible-light photoredox and Ni catalysis (Scheme 11) [48]. This protocol was applicable to a wide range of substrates, such as nonactivated alkenes

Sustainable tandem acylation/Diels–Alder reaction toward versatile tricyclic epoxyisoindole-7-carboxylic acids in renewable green solvents

• Ayhan Yıldırım

Beilstein J. Org. Chem. 2024, 20, 1308–1319, doi:10.3762/bjoc.20.114

• yields and the desired stereoselectivity [59][60][61]. The viscous nature of the aminofuranes usually requires the use of toxic solvents such as toluene, and in some studies, solvents such as DMSO, which are difficult to remove from the reaction medium [62][63][64]. Although solvent effects are of little

• synthesis scheme of various epoxyisoindole-7-carboxylic acids synthesized using the reaction conditions given in Table 1, entry 4 are given in Table 2 and Scheme 1, respectively. In general, IMDAF reactions proceed with high stereoselectivity to form the major exo addition product, in contrast to

Advancements in hydrochlorination of alkenes

• Daniel S. Müller

Beilstein J. Org. Chem. 2024, 20, 787–814, doi:10.3762/bjoc.20.72

• [6][59]. Kropp and co-workers also investigated the stereoselectivity for the hydrochlorination of 1,2-dimethylcyclohexene (29) (Scheme 12) [58]. They found a significant dependence of the stereoselectivity on the reaction time. After 1 minute a 88:12 cis-30/trans-30 ratio was observed which, after 2

Palladium-catalyzed three-component radical-polar crossover carboamination of 1,3-dienes or allenes with diazo esters and amines

• Geng-Xin Liu,
• Xiao-Ting Jie,
• Ge-Jun Niu,
• Li-Sheng Yang,
• Xing-Lin Li,
• Jian Luo and
• Wen-Hao Hu

Beilstein J. Org. Chem. 2024, 20, 661–671, doi:10.3762/bjoc.20.59

• allenes that were never used as substrates in interrupted radical Heck/allylic substitution reactions. As summarized in Scheme 3, unsaturated γ-AA derivatives were observed in this reaction albeit with poor stereoselectivity. Linear amines containing alkyl, hydroxy, and terminal alkenyl groups were

Enhanced reactivity of Li⁺@C₆₀ toward thermal [2 + 2] cycloaddition by encapsulated Li⁺ Lewis acid

• Hiroshi Ueno,
• Yu Yamazaki,
• Hiroshi Okada,
• Fuminori Misaizu,
• Ken Kokubo and
• Hidehiro Sakurai

Beilstein J. Org. Chem. 2024, 20, 653–660, doi:10.3762/bjoc.20.58

• , only the E-isomer was observed, as confirmed by 1H-1H 2D-NOESY NMR spectrum (Figure 4). This is not surprising because similar stereoselectivity has been reported in the photoinduced [2 + 2] cycloaddition reaction of empty C60, where the E-isomer is most thermodynamically stable [19][22]. The positive

Switchable molecular tweezers: design and applications

• Pablo Msellem,
• Maksym Dekthiarenko,
• Nihal Hadj Seyd and
• Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• and straightforward as it is usually considered. Keywords: concentration; glycosylation; protecting groups; reactivity; sialic acids; stereoselectivity; Introduction Glycoconjugates containing sialic acid occur on the surface of all cell types in a variety of organisms. They participate in a broad

• the stereoselectivity of sialylation, it is important to analyze anomeric ratio values (α/β) for the disaccharide fraction separated by size-exclusion chromatography since the retention values of different disaccharide anomers on silica gel may be surprisingly large and a minor isomer may be lost

• concentration (0.05 mol·L−1) differences between the reactions involving sialyl donors 1 and 2 are small (see Figure 2 and Table S1 in Supporting Information File 1). Noteworthy is a slightly higher stereoselectivity achieved when sialyl donor 1 with a trifluoroacetyl group at O-9 was used (α:β = 16:1 for 1

Construction of diazepine-containing spiroindolines via annulation reaction of α-halogenated N-acylhydrazones and isatin-derived MBH carbonates

• Xing Liu,
• Wenjing Shi,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 1923–1932, doi:10.3762/bjoc.19.143

• )benzenesulfonamides to give chiral azepane spirooxindoles with excellent stereoselectivity (reaction 2 in Scheme 1) [55][56]. Du and co-workers reported a DABCO-mediated [4 + 3] cycloaddition reaction between o-quinone methides and isatin-derived MBH carbonates to give functionalized benzo[b]oxepine derivatives in

A novel recyclable organocatalyst for the gram-scale enantioselective synthesis of (S)-baclofen

• Gyula Dargó,
• Dóra Erdélyi,
• Balázs Molnár,
• Péter Kisszékelyi,
• Zsófia Garádi and
• József Kupai

Beilstein J. Org. Chem. 2023, 19, 1811–1824, doi:10.3762/bjoc.19.133

• stereoselective Michael addition reactions. Homogeneous catalysis was carried out in non-polar solvents (i.e., toluene), which allows the high performance of the lipophilic organocatalyst in terms of yield and stereoselectivity. To facilitate the pharmaceutical use of the lipophilic organocatalyst, we

Decarboxylative 1,3-dipolar cycloaddition of amino acids for the synthesis of heterocyclic compounds

• Xiaofeng Zhang,
• Xiaoming Ma and
• Wei Zhang

Beilstein J. Org. Chem. 2023, 19, 1677–1693, doi:10.3762/bjoc.19.123

• ][56][57][58]. The [3 + 2] cycloadditions of AMYs B1–B4 with alkenes lead to the formation of cycloaddition products 3a–d with attenuated regio- and stereoselectivity, since the Ar group is not strong enough to fully localize the negative charge on the carbon connecting to Ar in the 1,3-dipoles. Both

• stereoselectivity which limits the synthetic utility of non-stabilized AMYs of type C. There are over 300 papers on the amino acid-based decarboxylative [3 + 2] cycloadditions of N–R-type AMYs B1 (such as that derived from proline) and B2 [31][32][33][34][35][36][37][38][39][40][41][42][43][44][45][46][47][48][49

• stereoselectivity (Scheme 3) [61][62]. From the results shown in Scheme 2 and Scheme 3, we envisioned that pyrrolidines 3c or 3d generated from the cycloaddition of AMYs B3 or B4 could undergo a second cycloaddition to form double cycloaddition products 4a or 4b (Scheme 4). The double cycloaddition process involves

Radical chemistry in polymer science: an overview and recent advances

• Zixiao Wang,
• Feichen Cui,
• Yang Sui and
• Jiajun Yan

Beilstein J. Org. Chem. 2023, 19, 1580–1603, doi:10.3762/bjoc.19.116

• a thiol to a C–C double bond and was first reported in 1905 [80]. It is considered as a click chemistry reaction due to its high yield, stereoselectivity, rate, and thermodynamic driving force. Generally, the thiol–ene reaction is conducted under radical conditions, often photochemically induced [81

α-(Aminomethyl)acrylates as acceptors in radical–polar crossover 1,4-additions of dialkylzincs: insights into enolate formation and trapping

• Angel Palillero-Cisneros,
• Paola G. Gordillo-Guerra,
• Fernando García-Alvarez,
• Olivier Jackowski,
• Franck Ferreira,
• Fabrice Chemla,
• Joel L. Terán and
• Alejandro Perez-Luna

Beilstein J. Org. Chem. 2023, 19, 1443–1451, doi:10.3762/bjoc.19.103

• with the starting acrylate for 1 h prior to the addition of air had a significant impact on the stereoselectivity. When air was introduced directly after Et2Zn (Table 3, entry 3) a much lower 59:41 dr was observed. This behavior was suggestive of the need for coordination of diethylzinc both to the

Application of N-heterocyclic carbene–Cu(I) complexes as catalysts in organic synthesis: a review

• Nosheen Beig,
• Varsha Goyal and
• Raj K. Bansal

Beilstein J. Org. Chem. 2023, 19, 1408–1442, doi:10.3762/bjoc.19.102

• reactive and difficult to isolate. The NHC–Cu complex also helps to control the regioselectivity and stereoselectivity of the reaction, which are of high importance in organic synthesis. Overall, the use of NHC–Cu complexes as catalysts for conjugate addition reactions offers a highly efficient and

• functionalities, applicability to a wide range of heteroarenes and allyl halides, and high stereoselectivity (Scheme 71). The enantioselective C(sp2)–H allylation of (benz)oxazoles and benzothiazoles with γ,γ-disubstituted primary allyl phosphates catalyzed by NHC–Cu(I) complexes was reported by Ohmiya, Sawamura

Non-noble metal-catalyzed cross-dehydrogenation coupling (CDC) involving ether α-C(sp³)–H to construct C–C bonds

• Hui Yu and
• Feng Xu

Beilstein J. Org. Chem. 2023, 19, 1259–1288, doi:10.3762/bjoc.19.94

• and stereoselectivity (Scheme 8) [58]. The mechanism of this reaction differs from the previously reported ones and proceeds through the in situ generation of nucleophilic and electrophilic partners which provides new opportunities for enantioselective oxocarbenium ion-driven CDC processes. Due to an

Acetaldehyde in the Enders triple cascade reaction via acetaldehyde dimethyl acetal

• Alessandro Brusa,
• Debora Iapadre,
• Maria Edith Casacchia,
• Alessio Carioscia,
• Giuliana Giorgianni,
• Giandomenico Magagnano,
• Fabio Pesciaioli and
• Armando Carlone

Beilstein J. Org. Chem. 2023, 19, 1243–1250, doi:10.3762/bjoc.19.92

• self-aldol condensations, polymerization and Tishchenko-type processes) and stereoselectivity [20]; the activation of acetaldehyde via aminocatalysis, furthermore, suffers from a lack of proper steric hindrance for the enantio-discrimination process. However, some methodologies enabling the use of

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

Aromatic C–H bond functionalization through organocatalyzed asymmetric intermolecular aza-Friedel–Crafts reaction: a recent update

• Anup Biswas

Beilstein J. Org. Chem. 2023, 19, 956–981, doi:10.3762/bjoc.19.72

• stereoselectivity is also explained. Keywords: asymmetric; aza-Friedel–Crafts reaction; H-bonding; organocatalysis; stereoselectivity; Introduction The ease of a chemical transformation depends on the thermodynamic instability of a chemical bond owing to its fast cleavage under mild reaction conditions. A C–H

• nitrogen and the catalyst which selectively blocks one face of the imine’s plane. This forces the nucleophile to approach from the opposite face thus imparting stereoselectivity into the products. The first organocatalyzed asymmetric aza-Friedel–Crafts protocol was published by Terada and co-workers in

• . Stereoselectivity in the products 10/11 was achieved by using the chiral spirocyclic phosphoric acid catalyst P3 which, through H-bonding interactions with the nucleophile and the electrophile, forces the nucleophile to approach the C=N plane from the Re face. In general, enantiocontrol with pyrroles was better

Pyridine C(sp²)–H bond functionalization under transition-metal and rare earth metal catalysis

• Haritha Sindhe,
• Malladi Mounika Reddy,
• Karthikeyan Rajkumar,
• Akshay Kamble,
• Amardeep Singh,
• Anand Kumar and
• Satyasheel Sharma

Beilstein J. Org. Chem. 2023, 19, 820–863, doi:10.3762/bjoc.19.62

• to furnish the transient complex 81 which undergoes σ-bond metathesis to give the product 77 and regenerating 78 (Scheme 16b). While speaking regarding the alkenylation, the geometrical isomerism, i.e., the stereoselectivity between the cis- and trans-alkenylation, has not been considered so far

Palladium-catalyzed enantioselective three-component synthesis of α-arylglycine derivatives from glyoxylic acid, sulfonamides and aryltrifluoroborates

• Bastian Jakob,
• Nico Schneider,
• Luca Gengenbach and
• Georg Manolikakes

Beilstein J. Org. Chem. 2023, 19, 719–726, doi:10.3762/bjoc.19.52

• investigate the influence of various fluoride scavengers as additives in the three-component process [25][26]. An extensive study (not shown), revealed that most common scavengers either led to a decreased yield, a decreased stereoselectivity or a combination of both. Yet a combination of CaCO3, tartaric acid

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• -methoxyphenyl (PMP)-protected imines 21 (Scheme 6A). By varying the reaction conditions, the syn-anti and the syn-syn diastereomers can be prepared with good yields and excellent stereoselectivity. Using nitroacrylate 23, the authors have also demonstrated a tandem conjugate addition/nitro-Mannich/lactamization

• secondary amine 157 generated in the cyclization step (Scheme 40B). Consequently, the complex tetracyclic compound 158 was produced in 47% yield and with good stereoselectivity (84% ee, dr 7.5:1). At about the same time, comparable results were reported by the group of Zhang [82]. Their Cu-catalyzed cascade

• enolate with various aldehydes provided the aldol adducts with good yields. Compared to general aldol reactions, the boron enolates showed lower reactivity and required overnight reflux to achieve good conversions. Nevertheless, the stereoselectivity of the reaction was still excellent (up to >95% ee, dr

A new oxidatively stable ligand for the chiral functionalization of amino acids in Ni(II)–Schiff base complexes

• Alena V. Dmitrieva,
• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2023, 19, 566–574, doi:10.3762/bjoc.19.41

• thermodynamically controlled stereoselectivity as compared to the parent Belokon complex. Additionally, functionalization with the tert-butyl group significantly enhances the reactivity of the deprotonated glycine complex towards electrophiles as compared to the anionic species formed from the original Belokon

• ]. Functionalization of the phenyl ring in the benzophenone gives rise to an additional axial chirality (L3), thus improving stereoselectivity observed at the removed stereocenter [24][25]. Replacing N-benzylproline for 2,7-dihydro-1H-azepine (L5) allowed obtaining a new tridentate ligand with chemically stable axial

• Michael acceptor. A number of thiols was taken as the model compounds. The reaction was performed under thermodynamic conditions reported in [41], to compare the thermodynamically controlled stereoselectivity of L7 and L1. The use of a 2 molar excess of K2CO3 induces the equilibrium between the isomers

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

Computational studies of Brønsted acid-catalyzed transannular cycloadditions of cycloalkenone hydrazones

• Manuel Pedrón,
• Jana Sendra,
• Irene Ginés,
• Tomás Tejero,
• Jose L. Vicario and
• Pedro Merino

Beilstein J. Org. Chem. 2023, 19, 477–486, doi:10.3762/bjoc.19.37

• ; Introduction Transannular cycloaddition reactions (TCRs) are useful for the synthesis of complex natural products and other biologically active compounds with high efficiency and stereoselectivity [1][2][3][4]. There are several different ways in which TCRs can occur, depending on the nature of the starting

Mechanochemical solid state synthesis of copper(I)/NHC complexes with K₃PO₄

• Ina Remy-Speckmann,
• Birte M. Zimmermann,
• Mahadeb Gorai,
• Martin Lerch and
• Johannes F. Teichert

Beilstein J. Org. Chem. 2023, 19, 440–447, doi:10.3762/bjoc.19.34

• ball mill synthesized bifunctional catalyst 5bm, again with slightly diminished yields and conversions. Application of the ball mill-synthesized complex 5bm in the alkyne semihydrogenation of tolane (12) gave (Z)-stilbene (13) with full stereoselectivity in good yield (86%, Scheme 3b). Noteworthy, the