Antibiofilm and cytotoxic metabolites from the entomopathogenic fungus Samsoniella aurantia

• Rita Toshe,
• Syeda J. Khalid,
• Blondelle Matio Kemkuignou,
• Esteban Charria-Girón,
• Paul Eckhardt,
• Birthe Sandargo,
• Kunlapat Nuchthien,
• J. Jennifer Luangsa-ard,
• Till Opatz,
• Hedda Schrey,
• Sherif S. Ebada and
• Marc Stadler

Beilstein J. Org. Chem. 2025, 21, 327–339, doi:10.3762/bjoc.21.23

• acid derivative named farinosone D. In addition, five known secondary metabolites were identified based on HRESIMS and detailed 1D/2D NMR spectroscopic analyses along with comparison with the reported literature. The isolated compounds were differentiated into two 2-pyridone derivatives farinosones A

Quantifying the ability of the CF₂H group as a hydrogen bond donor

• Matthew E. Paolella,
• Daniel S. Honeycutt,
• Bradley M. Lipka,
• Jacob M. Goldberg and
• Fang Wang

Beilstein J. Org. Chem. 2025, 21, 189–199, doi:10.3762/bjoc.21.11

• correlation between ΔGexp and ELP→σ*. Summary of ΔδDMSO–CDCl3, ΔδDMSO–CD3NO2, and A values of select HB donors.a Supporting Information Supporting Information File 90: Supplementary figures and schemes, materials, experimental procedures; characterization data (1D and 2D NMR, MS, HRMS) for all compounds

Ceratinadin G, a new psammaplysin derivative possessing a cyano group from a sponge of the genus Pseudoceratina

• Shin-ichiro Kurimoto,
• Kouta Inoue,
• Taito Ohno and
• Takaaki Kubota

Beilstein J. Org. Chem. 2024, 20, 3215–3220, doi:10.3762/bjoc.20.267

• of ceratinadin G (1) and psammaplysin F (2). Selected 2D NMR correlations for ceratinadin G (1). ECD spectra of ceratinadin G (1) and psammaplysin F (2) in MeOH. 1H and 13C NMR data of ceratinadin G (1) in methanol-d4. Supporting Information Supporting Information File 46: 1H NMR, 13C NMR, 1H-1H

Discovery of ianthelliformisamines D–G from the sponge Suberea ianthelliformis and the total synthesis of ianthelliformisamine D

• Sasha Hayes,
• Yaoying Lu,
• Bernd H. A. Rehm and
• Rohan A. Davis

Beilstein J. Org. Chem. 2024, 20, 3205–3214, doi:10.3762/bjoc.20.266

• aeruginosa biofilm inhibitors and antibiotic enhancers. Large-scale extraction and isolation studies resulted in the discovery of four new and minor natural products, ianthelliformisamines D–G (4–7) and the known steroid, aplysterol (8). Compounds 4–7 were fully characterised following 1D/2D NMR, MS and UV

• ). NMR data of ianthelliformisamines D (4) and E (5) in DMSO-d6.a NMR data of ianthelliformisamines F (6) and G (7) in DMSO-d6.a Supporting Information Supporting Information File 44: NMR data tables for compounds 4–7, 1D and 2D NMR spectra of compounds 4–7, 1H NMR spectra of natural products 1–3 and 8

C–H Trifluoromethylthiolation of aldehyde hydrazones

• Victor Levet,
• Balu Ramesh,
• Congyang Wang and
• Tatiana Besset

Beilstein J. Org. Chem. 2024, 20, 2883–2890, doi:10.3762/bjoc.20.242

• mixture. When the reaction was conducted in the presence of NBS in acetonitrile for 10 min, followed by the addition of AgSCF3, the desired product was isolated in 91% yield. A total selectivity for the formation of the Z isomer was observed as ascertained by 2D NMR (for more details, see Supporting

Synthesis and antimycotic activity of new derivatives of imidazo[1,2-a]pyrimidines

• Dmitriy Yu. Vandyshev,
• Daria A. Mangusheva,
• Khidmet S. Shikhaliev,
• Kirill A. Scherbakov,
• Oleg N. Burov,
• Alexander D. Zagrebaev,
• Tatiana N. Khmelevskaya,
• Alexey S. Trenin and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2024, 20, 2806–2817, doi:10.3762/bjoc.20.236

• imidazole nucleophilic center not involved in the first step. This process leads to the formation of alternative final products: imidazo[1,2-a]imidazoles 10 and 12, imidazo[1,5-a]pyrimidines 4, 5, 11 and 14, and imidazo[1,2-a]diazines 13 and 15. The analysis of the spectral data (1H and 13C NMR, 2D NMR

Metal-free double azide addition to strained alkynes of an octadehydrodibenzo[12]annulene derivative with electron-withdrawing substituents

• Naoki Takeda,
• Shuichi Akasaka,
• Susumu Kawauchi and
• Tsuyoshi Michinobu

Beilstein J. Org. Chem. 2024, 20, 2234–2241, doi:10.3762/bjoc.20.191

• previously reported electron-donating hexyloxy substituents. The addition pattern was experimentally investigated by 2D NMR, which was also supported by DFT calculations. The bistriazole product displayed fluorescence in the visible range with a fluorescence quantum yield of 7.0%. Finally, the developed

O,S,Se-containing Biginelli products based on cyclic β-ketosulfone and their postfunctionalization

• Kateryna V. Dil and
• Vitalii A. Palchykov

Beilstein J. Org. Chem. 2024, 20, 2143–2151, doi:10.3762/bjoc.20.184

• in our study (Table 1, entries 1–6), but in any case, we received a mixture of regioisomeric products 2a/2a’ (3:1 to 2:1) confirmed by 2D NMR spectroscopy (see Supporting Information File 1, Figures S1–S6). Classical conditions for Biginelli reaction (reflux in ethanolic HCl) gave only 23% yield

Allostreptopyrroles A–E, β-alkylpyrrole derivatives from an actinomycete Allostreptomyces sp. RD068384

• Marwa Elsbaey,
• Naoya Oku,
• Mohamed S. A. Abdel-Mottaleb and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2024, 20, 1981–1987, doi:10.3762/bjoc.20.174

• structures were elucidated by 1D and 2D NMR spectroscopic analyses, HRESIMS, and chemical derivatization. The absolute configurations of compounds 2 and 3 were predicted by comparison of experimental and calculated specific rotation data. Compounds 1–5 are the first examples of natural pyrroles substituted

• and 3 in CD3COCD3. 1H and 13C NMR data for 4 and 5. Supporting Information Supporting Information File 32: 1D and 2D NMR, MS, UV, and IR spectra of compounds 1–5; experimental section including general experimental procedures, microorganism, detailed procedures for fermentation, extraction, isolation

Novel oxidative routes to N-arylpyridoindazolium salts

• Oleg A. Levitskiy,
• Yuri K. Grishin and
• Tatiana V. Magdesieva

Beilstein J. Org. Chem. 2024, 20, 1906–1913, doi:10.3762/bjoc.20.166

• -arylpyridoindazolium salts S1–S3 was confirmed with HRMS and 1H, 13C and 19F NMR data; the complete assignment of the signals was performed using 2D NMR methods. The N–N bond formation was additionally confirmed via comparison of the 1H spectra for the salts and their diarylamine precursors. The absence of the signals

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• a [1,5]-H shift [19], indazolo[3’,2’:2,3]imidazo[1,5-c]quinazolin-6(5H)-one 18 (Scheme 7) [20]. The favorable host–guest interaction between 14 and the reactants (demonstrated by 2D NMR and FTIR spectroscopy as well as by scanning electron micrography), combined with the acidity of the succinyl

Mining raw plant transcriptomic data for new cyclopeptide alkaloids

• Draco Kriger,
• Michael A. Pasquale,
• Brigitte G. Ampolini and
• Jonathan R. Chekan

Beilstein J. Org. Chem. 2024, 20, 1548–1559, doi:10.3762/bjoc.20.138

• additional purification step using an HPLC system (Agilent) with a C18 column (C18 250 × 4.6 mm Luna Omega 5 5 µm C18 100 Å) and gradient of 55–70% B was employed. Structure elucidation of ceanothine B Ceanothine B was analyzed by 1D and 2D NMR in methanol-d4 in 5 mm NMR tubes (Wilmad LabGlass). NMR

• color-coded to show localization of various molecules. Molecules in red are new to this study and predicted by MS/MS fragmentation. Ceanothine B was isolated and its structure confirmed by 1D and 2D NMR. Correlations are indicated as follows: red lines – COSY, green lines – TOCSY, pink arrows – NOSEY

Selectfluor and alcohol-mediated synthesis of bicyclic oxyfluorination compounds by Wagner–Meerwein rearrangement

• Ziya Dağalan,
• Muhammed Hanifi Çelikoğlu,
• Saffet Çelik,
• Ramazan Koçak and
• Bilal Nişancı

Beilstein J. Org. Chem. 2024, 20, 1462–1467, doi:10.3762/bjoc.20.129

• (Scheme 1). The configurations of fluoroalkoxy compounds 3a–j were confirmed by the COSY 2D-NMR spectrum of compound 3a (Supporting Information File 1). Additionally, (+)-camphene (1b), a chiral natural product, was used as another alkene for fluoroalkoxy reactions. From (+)-camphene (1b), fluoroalkoxy

Structure–property relationships in dicyanopyrazinoquinoxalines and their hydrogen-bonding-capable dihydropyrazinoquinoxalinedione derivatives

• Tural N. Akhmedov,
• Ajeet Kumar,
• Daken J. Starkenburg,
• Kyle J. Chesney,
• Khalil A. Abboud,
• Novruz G. Akhmedov,
• Jiangeng Xue and
• Ronald K. Castellano

Beilstein J. Org. Chem. 2024, 20, 1037–1052, doi:10.3762/bjoc.20.92

• temperatures of 21 and 7 °C, respectively, from their corresponding DCPQ comparators. To complement the TGA studies, the thermal stability of compound 4b was evaluated through its exposure to air inside a 200 °C oven for one week. Structural evaluation by 2D NMR and mass spectrometry confirmed no decomposition

• , 230−400 mesh from Whatman. Routine 300(75) MHz 1H(13C) NMR spectra were recorded on Varian Mercury 300 or Gemini 300 spectrometers. Routine 500(125) MHz 1H(13C) NMR were recorded on an INOVA 500 spectrometer. 2D NMR spectra were recorded using a 600 MHz Varian instrument. Chemical shifts (δ) are given

Confirmation of the stereochemistry of spiroviolene

• Yao Kong,
• Yuanning Liu,
• Kaibiao Wang,
• Tao Wang,
• Chen Wang,
• Ben Ai,
• Hongli Jia,
• Guohui Pan,
• Min Yin and
• Zhengren Xu

Beilstein J. Org. Chem. 2024, 20, 852–858, doi:10.3762/bjoc.20.77

• to cyclopentane skeleton, as well as its stereochemistry, was originally elucidated as 1' as shown in Figure 1, on the basis of detailed analysis of 1D and 2D NMR spectroscopy. Spiroviolene was also found to be produced by several bacterial strains harboring SvS homologs [6][7], as well as putative

Skeletal rearrangement of 6,8-dioxabicyclo[3.2.1]octan-4-ols promoted by thionyl chloride or Appel conditions

• Martyn Jevric,
• Julian Klepp,
• Johannes Puschnig,
• Oscar Lamb,
• Christopher J. Sumby and
• Ben W. Greatrex

Beilstein J. Org. Chem. 2024, 20, 823–829, doi:10.3762/bjoc.20.74

• , with the exo-hemiacetals favoured due to steric interactions between the substituents and alcohol, while the attempted preparation of 12b led only to complex mixtures (Scheme 2). The products of the reactions were characterised by 1D and 2D NMR, and X-ray crystallography of members from each class was

Discovery and biosynthesis of bacterial drimane-type sesquiterpenoids from Streptomyces clavuligerus

• Dongxu Zhang,
• Wenyu Du,
• Xingming Pan,
• Xiaoxu Lin,
• Fang-Ru Li,
• Qingling Wang,
• Qian Yang,
• Hui-Min Xu and
• Liao-Bin Dong

Beilstein J. Org. Chem. 2024, 20, 815–822, doi:10.3762/bjoc.20.73

• comparing the 1H and 13C NMR data with the literature (Figures S11 and S12 in Supporting Information File 1) [41]. Although the chemical structure of compound 8 has been documented, its 1H and 13C NMR data were not fully reported [42]. Therefore, we conducted comprehensive 1D and 2D NMR experiments on it

Isolation and structure determination of a new analog of polycavernosides from marine Okeania sp. cyanobacterium

• Kairi Umeda,
• Naoaki Kurisawa,
• Ghulam Jeelani,
• Tomoyoshi Nozaki,
• Kiyotake Suenaga and
• Arihiro Iwasaki

Beilstein J. Org. Chem. 2024, 20, 645–652, doi:10.3762/bjoc.20.57

• from a marine Okeania sp. cyanobacterium. The relative configuration was elucidated primarily by analyzing the two dimensional nuclear magnetism resonance (2D NMR) data. The absolute configuration was clarified by comparing the electronic circular dichroism (ECD) data of 1 with those of known analogs

• brucei rhodesiense. Conclusion In conclusion, we isolated a new polycavernoside analog, named polycavernoside E (1), from a marine Okeania sp. cyanobacterium. The relative configuration was elucidated mainly by analyzing the 2D NMR data. The absolute configuration was determined based on a comparison of

• in 96-well plates (Iwaki) and cultured overnight. Various concentrations of compounds were then added, and cells were incubated for 72 h. Cell proliferation was measured by the MTT assay. Structures of compounds 1, 2, and 5. Planar structure of polycavernoside E (1) based on 2D NMR analysis. Relative

Chemical and biosynthetic potential of Penicillium shentong XL-F41

• Ran Zou,
• Xin Li,
• Xiaochen Chen,
• Yue-Wei Guo and
• Baofu Xu

Beilstein J. Org. Chem. 2024, 20, 597–606, doi:10.3762/bjoc.20.52

• found in the methods section. Chemical structures of compounds 1–12. Key 2D NMR correlations of compounds 1–3. Experimental and calculated ECD spectra at the CAM-B3LYP/6-311G(d,p) level of theory for compound 1. Biosynthetic exploration of compounds 1 and 2. A: The schematic presents the biosynthetic

Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• pathway for compounds 1–5. 1H (500 MHz) and 13C NMR (125 MHz) data for compounds 1–3. Antimicrobial activities of compounds 1–3 (MIC).a Supporting Information Supporting Information File 5: Selected 1D and 2D NMR, and HRESIMS spectra of compounds 1 and 2, and 1D NMR spectra of compounds 3–5. Supporting

Spatial arrangements of cyclodextrin host–guest complexes in solution studied by ¹³C NMR and molecular modelling

• Konstantin Lebedinskiy,
• Ivan Barvík,
• Zdeněk Tošner,
• Ivana Císařová,
• Jindřich Jindřich and
• Radim Hrdina

Beilstein J. Org. Chem. 2024, 20, 331–335, doi:10.3762/bjoc.20.33

• calorimetry [13]. Single crystals for many host–guest complexes have been prepared, and their structure elucidated by X-ray crystallography [14][15]. Conformations of host–guest complexes in solution have been studied by 2D NMR experiments [11] (NOESY, ROESY) or proposed computationally [16][17] based on

• proton signals of CDs in 1H NMR or 2D NMR ROESY or NOESY experiments can indicate the spatial distances between host and guest atoms and distinguish between enantiomeric guests. However, the evaluation of such interactions is often hampered by overlapping signals [20]. Results and Discussion In this work

Discovery of unguisin J, a new cyclic peptide from Aspergillus heteromorphus CBS 117.55, and phylogeny-based bioinformatic analysis of UngA NRPS domains

• Sharmila Neupane,
• Marcelo Rodrigues de Amorim and
• Elizabeth Skellam

Beilstein J. Org. Chem. 2024, 20, 321–330, doi:10.3762/bjoc.20.32

• – unguisin J (1) – along with known unguisin B (2) were isolated from a solid culture of Aspergillus heteromorphus CBS 117.55. The structure of compound 1 was elucidated by extensive 1D and 2D NMR spectroscopic analysis including HSQC, HMBC, COSY, and 2D NOESY as well as HRESIMS. The stereochemistry of 1 and

• compound 1 was elucidated by 1D and 2D NMR and HRESIMS/MS. Unguisin B was identified by the 1H and 13C NMR data with the reported data [1][5]. Compound 1 was obtained as a white amorphous solid optically active, with +23.4 (c 0.1, MeOH). Its molecular formula was established as C41H56N8O7 by HRMS ([M + H

• , 7.33, 7.07 and 6.97 ppm, exhibiting key 1H,1H-COSY and HMBC correlations, suggested a tryptophan aromatic amino acid portion (Figure 3). The other six amino acid residues were assigned based on 2D NMR spectra (1H-1H COSY, HSQC and HMBC) as Ala (2 equiv), Phe (1 equiv), Leu (1 equiv), Val (1 equiv), and

NMRium: Teaching nuclear magnetic resonance spectra interpretation in an online platform

• Luc Patiny,
• Hamed Musallam,
• Alejandro Bolaños,
• Michaël Zasso,
• Julien Wist,
• Metin Karayilan,
• Eva Ziegler,
• Johannes C. Liermann and
• Nils E. Schlörer

Beilstein J. Org. Chem. 2024, 20, 25–31, doi:10.3762/bjoc.20.4

• ), Cleveland, Ohio 44106, United States, Department of Chemistry, Johannes Gutenberg University Mainz, 55099 Mainz, Germany 10.3762/bjoc.20.4 Abstract NMRium is the first web-based software that allows displaying, processing, interpretation, and teaching of 1D and 2D NMR data in a user-friendly interface. It

• grasp functionality would make it a preselected tool for the review process of chemistry publications. Future developments of NMRium include the processing of 2D NMR experiments, as well as a CASE- and prediction-supported assignment tool with an integrated validation function for assigned data [44

• ]. Currently, first implementations of NMRium in other environments have already successfully started. NMRium.org user interface showing a 2D NMR quiz for an unknown compound with a given molecular formula. NMRium interface assignment functionality for a drag-and-drop example. Analysis of overlapping signals

Unprecedented synthesis of a 14-membered hexaazamacrocycle

• Anastasia A. Fesenko and
• Anatoly D. Shutalev

Beilstein J. Org. Chem. 2023, 19, 1728–1740, doi:10.3762/bjoc.19.126

• , according to NMR spectroscopic data, the isolated product was a mixture of the desired macrocycle 5 and a noticeable amount of an impurity (Scheme 2) whose formation was not mentioned in the cited reference. The structure of the concomitant impurity was established using 1D and 2D NMR spectroscopy. The 1H

• the 1H and 13C{1H} NMR spectra of compound 5 in DMSO-d6 show only a half-number set of proton or carbon signals (five and six signals, respectively), thus indicating its C2-symmetric dimeric structure. The analysis of 2D NMR spectroscopic data provided additional evidence for the macrocycle 5

• rearrangement that is known to proceed in 3-substituted 4-iminopyrimidine systems [40][45][46][47]. Our analysis of 1H, 13C NMR, and 2D NMR spectra (DMSO-d6 solution) of the prepared product confirmed its structure as compound 8. For example, the 1H,13C-HMBC spectrum showed correlation of the NH2 protons with

Sulfur-containing spiroketals from Breynia disticha and evaluations of their anti-inflammatory effect

• Ken-ichi Nakashima,
• Naohito Abe,
• Masayoshi Oyama,
• Hiroko Murata and
• Makoto Inoue

Beilstein J. Org. Chem. 2023, 19, 1604–1614, doi:10.3762/bjoc.19.117

• disticha. The structures of compounds 1–7 were elucidated by extensive 1D and 2D NMR spectroscopic analyses, including 1D total correlation spectroscopy (TOCSY), HSQC, HMBC, double quantum-filtered (DQF)-COSY, heteronuclear two-bond correlation (H2BC), and HSQC-TOCSY experiments, as well as high-resolution

• isolated as an amorphous, colorless powder. Because the sodium adduct ion peak at m/z 1107.3178 in the HRESIMS spectrum gave the same molecular formula as that of 1 (C45H64O28SNa, calcd 1107.3197), compounds 1 and 2 were determined to be isomers. The 1D and 2D NMR spectroscopic data indicated that the

• ], these differences indicate that the sulfoxide moieties in the aglycone of 1 and 2 are isomers. The remaining NMR resonances (Table 2) and 2D NMR spectroscopic data (Figure 2) showed that the glycosyl group of 2 was the same as that of 1. This assignment was further supported by HPLC-based monosaccharide