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Search for "dye" in Full Text gives 266 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Synthesis of HBC fluorophores with an electrophilic handle for covalent attachment to Pepper RNA

  • Raphael Bereiter and
  • Ronald Micura

Beilstein J. Org. Chem. 2025, 21, 727–735, doi:10.3762/bjoc.21.56

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  • with an electrophilic handle for the covalent attachment of the surrogate to the RNA. The resulting irreversibly tethered dye–RNA complexes have opened up new avenues for RNA imaging in live cells. Here, we report the syntheses of such modified HBC530 ((4-((2-hydroxyethyl)(methyl)amino)benzylidene
  • have shown that this feature can be exploited to construct a covalent bond between the fluorophore and the RNA by replacing the N-hydroxyethyl group of the dye with an electrophilic handle, resulting in efficient RNA alkylation at the N7 of G41 [11]. Synthesis and evaluation of Pepper dyes with an
  • 14 (Figure 2). Synthesis of a bifunctional Pepper dye Encouraged by the efficient attachment of the bromo- and mesyloxypropyl-modified HBC fluorophores to the Pepper aptamer, we generated a bifunctional HBC ligand with a second handle that is available for bioorthogonal reactions. The original
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Published 04 Apr 2025

Unprecedented visible light-initiated topochemical [2 + 2] cycloaddition in a functionalized bimane dye

  • Metodej Dvoracek,
  • Brendan Twamley,
  • Mathias O. Senge and
  • Mikhail A. Filatov

Beilstein J. Org. Chem. 2025, 21, 500–509, doi:10.3762/bjoc.21.37

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Published 05 Mar 2025

Synthesis, structure, ionochromic and cytotoxic properties of new 2-(indolin-2-yl)-1,3-tropolones

  • Yurii A. Sayapin,
  • Eugeny A. Gusakov,
  • Inna O. Tupaeva,
  • Alexander D. Dubonosov,
  • Igor V. Dorogan,
  • Valery V. Tkachev,
  • Anna S. Goncharova,
  • Gennady V. Shilov,
  • Natalia S. Kuznetsova,
  • Svetlana Y. Filippova,
  • Tatyana A. Krasnikova,
  • Yanis A. Boumber,
  • Alexey Y. Maksimov,
  • Sergey M. Aldoshin and
  • Vladimir I. Minkin

Beilstein J. Org. Chem. 2025, 21, 358–368, doi:10.3762/bjoc.21.26

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  • equation formalism (IEFPCM) [38]. Biological experiments The MTT colorimetric test for cell viability assessment is based on the reduction by NADPH-H-dependent cellular oxidoreductase enzymes of the tetrazolium dye 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, which has yellow color, into
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Published 17 Feb 2025

Red light excitation: illuminating photocatalysis in a new spectrum

  • Lucas Fortier,
  • Corentin Lefebvre and
  • Norbert Hoffmann

Beilstein J. Org. Chem. 2025, 21, 296–326, doi:10.3762/bjoc.21.22

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  • therapeutic methods [78][79][80]. Such reactions can be performed at particular locations such as DNA or tubulin, when the photocatalyst is placed via a tethered ligand (Scheme 17) [81]. In the present case, the triarylmethine dye 67 was used as sensitizer. It is in equilibrium with the lactone form 68 and
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Published 07 Feb 2025

Quantifying the ability of the CF2H group as a hydrogen bond donor

  • Matthew E. Paolella,
  • Daniel S. Honeycutt,
  • Bradley M. Lipka,
  • Jacob M. Goldberg and
  • Fang Wang

Beilstein J. Org. Chem. 2025, 21, 189–199, doi:10.3762/bjoc.21.11

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  • established methods, including 1H NMR-based hydrogen bond acidity determination, UV–vis spectroscopy titration with Reichardt's dye, and 1H NMR titration using tri-n-butylphosphine oxide as a hydrogen bond acceptor. Our experiments reveal that the direct attachment of the CF2H group to cationic aromatic
  • Reichardt's dye [53][54][55] as an indicator. These experiments measure the blue shift of Reichardt's dye upon complexation with an HB donor (Figure 3A, and Figures S13–S18 in Supporting Information File 1), from which the dissociation constant (Kd) of the HB complex can be determined. A smaller Kd value
  • corresponds to a more stable complex, indicating a stronger HB donor. We employed this protocol to investigate a series of HB donors in anhydrous acetonitrile (Figure 3B). Acetonitrile is weakly HB accepting (α = 0.19) [51] and was thus chosen to attenuate the competition between the solvent and the dye with
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Published 20 Jan 2025

Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

  • Lucía Campos-Prieto,
  • Aitor García-Rey,
  • Eddy Sotelo and
  • Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

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  • channel blockade was determined by the measure of Ca2+ influx induced by K+-depolarization in SH-SY5Y neuroblastoma cells, previously loaded with the fluorescent dye Fluo-4AM. On the other hand, the antioxidant activity of the DHPs was evaluated using the ORAC-FL method. The most potent compounds
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Published 03 Dec 2024

Advances in the use of metal-free tetrapyrrolic macrocycles as catalysts

  • Mandeep K. Chahal

Beilstein J. Org. Chem. 2024, 20, 3085–3112, doi:10.3762/bjoc.20.257

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  • applied in various fields, including organometallic catalysis, dye-sensitized solar cells, sensing, artificial olfactory systems, photodynamic therapy (PDT), anticancer drugs, biochemical probes, and electrochemical devices. Relevant examples of these two pyrrolic macrocycles as metal-free organocatalysts
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Published 27 Nov 2024
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  • reported that in the case of the dye molecule existing inside the CD cavity, the plus Cotton effect was observed when the dipole was directed along the axle of the cavity, whereas it became minus when the dipole was directed perpendicular to this axle (Figure 6, left) [59]. When the dye molecule was
  • the entire solution derived from the release of the dumbbell 13 after the decrosslinking. This fluorescence wavelength change was induced by the solvation of the dye moieties. Since the dumbbell contains the push-pull type substituents on the biphenyl structure, this dye showed solvatochromism
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Published 19 Nov 2024

Tunable full-color dual-state (solution and solid) emission of push–pull molecules containing the 1-pyrindane moiety

  • Anastasia I. Ershova,
  • Sergey V. Fedoseev,
  • Konstantin V. Lipin,
  • Mikhail Yu. Ievlev,
  • Oleg E. Nasakin and
  • Oleg V. Ershov

Beilstein J. Org. Chem. 2024, 20, 3016–3025, doi:10.3762/bjoc.20.251

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  • materials [14][20][21][22][23][24][25][26][27][28][29][30][31][32][33]. For example, organic π-systems whose main structural unit is stilbazole are used as active compounds in organic light-emitting diodes (OLEDs) [20], dye-sensitized solar cells (DSSCs) [21], nonlinear optics (NLO) materials [22][23
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Published 19 Nov 2024

N-Glycosides of indigo, indirubin, and isoindigo: blue, red, and yellow sugars and their cancerostatic activity

  • Peter Langer

Beilstein J. Org. Chem. 2024, 20, 2840–2869, doi:10.3762/bjoc.20.240

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  • photophysical materials. While unsubstituted (parent) indigo (1a) is not a natural product, Tyrian purple (also known as Shellfish purple) is present in nature and represents, besides indigo, an important indigo derivative used as a dye for thousands of years [4]. Several types of cancers, Alzheimer's disease
  • be inactive. The activities of β-33b and 34 on the cell viability was independently studied by using crystal violet as a dye for viable cells following a 48 h incubation of A375 melanoma cells and A431 squamous carcinoma cells. Interestingly, a concentration-dependent cytotoxicity was again observed
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Published 08 Nov 2024

Applications of microscopy and small angle scattering techniques for the characterisation of supramolecular gels

  • Connor R. M. MacDonald and
  • Emily R. Draper

Beilstein J. Org. Chem. 2024, 20, 2608–2634, doi:10.3762/bjoc.20.220

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  • , meaning no drying is required of the material, the material itself needs to be fluorescent (but not quenching upon assembly) or the addition of a dye is required. Such dyes need to be able to stick with the fibres, rather than sitting in the pores. Therefore, the fluorescent material is either chemically
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Published 16 Oct 2024

Transition-metal-free synthesis of arylboronates via thermal generation of aryl radicals from triarylbismuthines in air

  • Yuki Yamamoto,
  • Yuki Konakazawa,
  • Kohsuke Fujiwara and
  • Akiya Ogawa

Beilstein J. Org. Chem. 2024, 20, 2577–2584, doi:10.3762/bjoc.20.216

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  • are one of the fundamental aryl compounds in organic synthesis, especially in cross-coupling reactions [1][2][3][4][5][6][7][8][9], and their applications are widespread, including dye synthesis, pharmaceutical and agrochemical synthesis, and industrial manufacturing [10][11]. In recent years, a
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Published 11 Oct 2024

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

  • Nian Li,
  • Ruzal Sitdikov,
  • Ajit Prabhakar Kale,
  • Joost Steverlynck,
  • Bo Li and
  • Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

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  • [70]. The mildness of this reaction was demonstrated through the late-stage C–H trifluoromethylation of ascapheine, pentoxifylline, doxophylline, theobromine, methylethrone, and tryptophan derivatives. During the reaction, irradiation of the organic dye Mes-Acr+ leads to the formation of its oxidized
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Published 09 Oct 2024

Machine learning-guided strategies for reaction conditions design and optimization

  • Lung-Yi Chen and
  • Yi-Pei Li

Beilstein J. Org. Chem. 2024, 20, 2476–2492, doi:10.3762/bjoc.20.212

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  • . Guo et al. [186] used a synthesis strategy that combines Monte Carlo Tree Search (MCTS) with reinforcement learning to model the retrosynthesis game, aiming to identify high-value synthetic pathways. Recently, Koscher et al. [21] have shown the simultaneous design and synthesis of dye molecules
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Published 04 Oct 2024

Photoredox-catalyzed intramolecular nucleophilic amidation of alkenes with β-lactams

  • Valentina Giraldi,
  • Giandomenico Magagnano,
  • Daria Giacomini,
  • Pier Giorgio Cozzi and
  • Andrea Gualandi

Beilstein J. Org. Chem. 2024, 20, 2461–2468, doi:10.3762/bjoc.20.210

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  • the cis-isomer. The optimal PC for the reaction was acridinium salt IV (Table 1, entry 1), while the Fukuzumi catalyst (I), commonly employed by Nicewicz et al., was less effective (Table 1, entry 9). 3CzClIPN, an organic dye belonging to the class of thermally activated delayed fluorescence (TADF
  • ) dyes commonly employed nowadays in photoredox catalysis [47], was tested in our reaction. This dye was chosen due to its oxidizing properties, and it ranks among the most oxidizing agents within this class of compounds (E1/2[*PC/PC•−] = +1.56 V vs SCE) [48], but it proved ineffective in our reaction
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Published 01 Oct 2024

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

  • Andreas Wiest and
  • Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

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  • the SDS-PAGE. This approach also accounts for the protein-level identification; the exact modification site remains unknown. Here we show an example of the most used and commercially available rhodamine-derived dye (TAMRA-azide, Figure 6A). The bioorthogonal reaction between probe-labeled proteins and
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Published 12 Sep 2024

Novel truxene-based dipyrromethanes (DPMs): synthesis, spectroscopic characterization and photophysical properties

  • Shakeel Alvi and
  • Rashid Ali

Beilstein J. Org. Chem. 2024, 20, 2163–2170, doi:10.3762/bjoc.20.186

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  • ][12][13]. The most promising applications of truxene-based systems have been found in organic photovoltaics (OPVs), dye‐sensitized solar cells (DSSCs), fluorescent probes, organic thin‐film transistors (OTFTs), lasers, organic light emitting diodes (OLEDs), liquid crystals, non-linear optical (NLO
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Published 29 Aug 2024

Efficacy of radical reactions of isocyanides with heteroatom radicals in organic synthesis

  • Akiya Ogawa and
  • Yuki Yamamoto

Beilstein J. Org. Chem. 2024, 20, 2114–2128, doi:10.3762/bjoc.20.182

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  • metal complex or functional dye as a photocatalyst (PC) [19][20]. Recently, some important reviews summarize and discuss the use of method 3 in synthetic organic chemistry [21][22]; in contrast, there is little detailed and coherent literature on the overall research trends regarding the latest research
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Published 26 Aug 2024

A new platform for the synthesis of diketopyrrolopyrrole derivatives via nucleophilic aromatic substitution reactions

  • Vitor A. S. Almodovar and
  • Augusto C. Tomé

Beilstein J. Org. Chem. 2024, 20, 1933–1939, doi:10.3762/bjoc.20.169

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  • (disubstitution) and non-symmetrical (monosubstitution) DPP derivatives are formed in excellent overall yields. The optical properties of the newly synthesized compounds are also discussed. The new platform may be useful for bioorthogonal chemistry. Keywords: diketopyrrolopyrrole; fluorescent dye; nucleophilic
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Published 08 Aug 2024

Benzylic C(sp3)–H fluorination

  • Alexander P. Atkins,
  • Alice C. Dean and
  • Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 1527–1547, doi:10.3762/bjoc.20.137

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  • disclosed the use of catalytic amounts of the organic dye Acr+-Mes under visible-light irradiation in combination with stoichiometric amounts of Selectfluor to achieve benzylic fluorination (Figure 29) [74]. It was proposed that a SET between Selectfluor and the photoexcited catalyst liberated fluoride and
  • fluorination in continuous flow. Photochemical phenylalanine fluorination in peptides. Decatungstate-photocatalyzed versus AIBN-initiated selective benzylic fluorination. Benzylic fluorination using organic dye Acr+-Mes and Selectfluor. Palladium-catalysed benzylic C(sp3)–H fluorination with nucleophilic
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Published 10 Jul 2024

Generation of alkyl and acyl radicals by visible-light photoredox catalysis: direct activation of C–O bonds in organic transformations

  • Mithu Roy,
  • Bitan Sardar,
  • Itu Mallick and
  • Dipankar Srimani

Beilstein J. Org. Chem. 2024, 20, 1348–1375, doi:10.3762/bjoc.20.119

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  • organic dye Mes–Acr–MeClO4 as photocatalyst (Scheme 5). They demonstrated intermolecular radical cyclization of o-hydroxybenzoic acid derivatives with terminal alkynes to afford flavone derivatives. Here, functionally diverse flavonoids were synthesized in moderate to excellent yield by reacting various
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Published 14 Jun 2024

Carbonylative synthesis and functionalization of indoles

  • Alex De Salvo,
  • Raffaella Mancuso and
  • Xiao-Feng Wu

Beilstein J. Org. Chem. 2024, 20, 973–1000, doi:10.3762/bjoc.20.87

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  • ring. It was discovered in 1866 by Baeyer and Knop as the basic structure of the natural dye indigo, from which it is derived [1]. The indole ring is a common structural element found in both natural and synthetic products, including pharmaceuticals, agrochemicals, dyes, herbicides, and materials [2][3
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Published 30 Apr 2024

Switchable molecular tweezers: design and applications

  • Pablo Msellem,
  • Maksym Dekthiarenko,
  • Nihal Hadj Seyd and
  • Guillaume Vives

Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45

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Published 01 Mar 2024

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

  • Eugeny Ivakhnenko,
  • Vasily Malay,
  • Pavel Knyazev,
  • Nikita Merezhko,
  • Nadezhda Makarova,
  • Oleg Demidov,
  • Gennady Borodkin,
  • Andrey Starikov and
  • Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

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  • potential for testing as potential donors for organic solar cells or as dye sensitizers for dye-sensitized solar cells [24][25]. Experimental All reagents and solvents were purchased from commercial sources (Aldrich) and used without additional purification. The compounds were characterized by 1H, 13C, and
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Published 21 Feb 2024

Photochromic derivatives of indigo: historical overview of development, challenges and applications

  • Gökhan Kaplan,
  • Zeynel Seferoğlu and
  • Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

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  • and unsymmetrical N,N'-substituted alkyl- and arylindigos with tunable thermal half-lives (follow-up mechanistic studies in 2022) 2018: first report on photochromic monoarylated indigos Synthesis of indigo derivatives Indigo (Ind) is one of the oldest organic molecules, which has been used as a dye
  • towards indigo and its derivatives have been recently reviewed in detail by Hecht and Huang [9]. Strucutre and photophysical properties of indigo Indigo dye is blue crystalline powder, which starts to melt at above 390 °C and sublimes in vacuum at above 170 °C [2]. In 1980, it was discovered that indigo
  • exists in two crystalline modifications, namely indigo A and indigo B. In particular, 10% of indigo B was found alongside the known form indigo A (90%), in the dye crystals grown from vapor at 10 torr. Both crystalline forms of indigo have the same symmetry and similar cell parameters with the only
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Published 07 Feb 2024
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