The effect of neighbouring group participation and possible long range remote group participation in O-glycosylation

• Rituparna Das and
• Balaram Mukhopadhyay

Beilstein J. Org. Chem. 2025, 21, 369–406, doi:10.3762/bjoc.21.27

• supported by NMR data showing the formation of the respective intermediates. Previously, this stabilisation of a similar α-glycosyl intermediate had been successfully implemented by Crich et al. leading to high β-selectivity in challenging mannose and rhamnose moieties [37]. The moderate yield and β

• corresponding orthophosphate intermediates. However, the NMR analysis showed the formation of covalent α-glycosyl triflates 72 as the intermediate indicating an SN2-like mechanistic pathway where the acceptor attacked from the opposite face of the α-triflate intermediates (path A, Scheme 13) which was triggered

• intermediates [144]. However, C-2 phthalimidoxy-protected trichloroacetimidate glycosyl donors gave higher 1,2-trans selectivity in comparison to C-2 phthalimidoxy-protected N-phenyl 2,2,2-trifluoroacetimidate glycosyl donors. Ether-type participating protecting groups: In the absence of neighbouring acyl-type

Synthesis, structure, ionochromic and cytotoxic properties of new 2-(indolin-2-yl)-1,3-tropolones

• Yurii A. Sayapin,
• Eugeny A. Gusakov,
• Inna O. Tupaeva,
• Alexander D. Dubonosov,
• Igor V. Dorogan,
• Valery V. Tkachev,
• Anna S. Goncharova,
• Gennady V. Shilov,
• Natalia S. Kuznetsova,
• Svetlana Y. Filippova,
• Tatyana A. Krasnikova,
• Yanis A. Boumber,
• Alexey Y. Maksimov,
• Sergey M. Aldoshin and
• Vladimir I. Minkin

Beilstein J. Org. Chem. 2025, 21, 358–368, doi:10.3762/bjoc.21.26

• ). As shown in Scheme 2, in the initial step, the aldol condensation of 2,3,3-trimethylindolenine 2 with o-chloranil (3) leads to the intermediate compounds, 6-(2-hetarylmethylene)-6-hydroxy-2,4-cyclohexadien-1-ones 4. Such intermediates were isolated preparatively and structurally characterized in the

Three-component reactions of conjugated dienes, CH acids and formaldehyde under diffusion mixing conditions

• Dmitry E. Shybanov,
• Maxim E. Kukushkin,
• Eugene V. Babaev,
• Nikolai V. Zyk and
• Elena K. Beloglazkina

Beilstein J. Org. Chem. 2025, 21, 262–269, doi:10.3762/bjoc.21.18

• generate crotonic condensation adducts of active methylene compounds and formaldehyde at room temperature in the absence of strong acids and bases. The formed adducts were highly reactive intermediates capable of reacting with dienes in a three-component reaction, leading to the formation of Diels–Alder

• placed an open small vial with a solution of the other starting compounds (Figure 1). During the reaction, formaldehyde vapors from the outer vial were slowly absorbed by the mixture in the inner vial, which ensured an extremely low concentration of CH2O and intermediates in the reaction. An alternative

• to the diffusion mixing method is the slow dropwise addition of a reagent to the reaction mixture. However, in the latter case it is not possible to achieve uniform generation of active intermediates due to their formation in a local area, which accelerates unwanted side processes [19]. The results

Synthesis of disulfides and 3-sulfenylchromones from sodium sulfinates catalyzed by TBAI

• Zhenlei Zhang,
• Ying Wang,
• Xingxing Pan,
• Manqi Zhang,
• Wei Zhao,
• Meng Li and
• Hao Zhang

Beilstein J. Org. Chem. 2025, 21, 253–261, doi:10.3762/bjoc.21.17

• alkylsulfinates were also successfully converted to the corresponding disulfides in high yields (2n and 2o). In our synthesis of disulfides, thiosulfonates were also present as intermediates besides forming disulfides. In view of the fact that in the literature above disulfides or thiosulfonates could be

Dioxazolones as electrophilic amide sources in copper-catalyzed and -mediated transformations

• Seungmin Lee,
• Minsuk Kim,
• Hyewon Han and
• Jongwoo Son

Beilstein J. Org. Chem. 2025, 21, 200–216, doi:10.3762/bjoc.21.12

• Synthesis of primary amides via the generation of copper–imidate radical intermediates In a subsequent study, the research group of Son developed a method for the reduction of dioxazolones to synthesize primary amides under mild reducing conditions in copper catalysis (Scheme 10) [103]. The reaction was

• –N, P–N, and N–H bond-forming reactions. Several studies have proposed copper nitrenoid intermediates originating from dioxazolones, involving an N-acyl nitrene transfer or hydrogen atom transfer process, representing creative synthetic solutions that were previously unachievable using conventional

• approaches. Despite the synthetic strategies to generate the copper nitrenoid intermediates are gaining more attention [104][105], several limitations still remain. First, multiple steps are required to prepare dioxazolones, synthesized conventionally from carboxylic acids or acid chlorides over two steps

Recent advances in electrochemical copper catalysis for modern organic synthesis

• Yemin Kim and
• Won Jun Jang

Beilstein J. Org. Chem. 2025, 21, 155–178, doi:10.3762/bjoc.21.9

• reactions, particularly in controlling the high reactivity and selectivity of radical intermediates [13][14]. Early studies on copper-mediated radical reactions, such as Julia’s work on radical cyclization reaction [15], along with advancements in dimerization [16][17], oxidative cleavage [18][19], and

• viable alternatives to conventional chemical oxidizing and reducing agents [31], electrochemical reactions not only enable substrates to undergo single-electron transfer at the cathode or anode, either directly or indirectly, generating highly reactive radical intermediates, but also allow direct

• alkylamines with arylboronic acids, achieving high yields. Mechanistic studies revealed that the mediator plays multiple roles, including rapidly oxidizing low-valent Cu intermediates to maintain high Cu(II) concentrations, removing Cu metal from the cathode to regenerate the active Cu catalyst, revealing the

Nickel-catalyzed cross-coupling of 2-fluorobenzofurans with arylboronic acids via aromatic C–F bond activation

• Takeshi Fujita,
• Haruna Yabuki,
• Ryutaro Morioka,
• Kohei Fuchibe and
• Junji Ichikawa

Beilstein J. Org. Chem. 2025, 21, 146–154, doi:10.3762/bjoc.21.8

• -(trifluoromethyl)-1-alkenes strongly interact with electron-rich zero-valent nickel species to form nickelacyclopropanes C [15][16][17]. These intermediates enable C–F bond activation through the formation of nickelacyclopentenes D with alkynes, followed by β-fluorine elimination, leading to defluorinative

• -deficient carbon atom owing to the nearby fluorine and oxygen atoms. We expected that 2-fluorobenzofurans 1 could form nickelacyclopropanes E upon treatment with zero-valent nickel species. Subsequent β-fluorine elimination from these intermediates E would facilitate the activation of aromatic C–F bonds

• (Scheme 1c). In this study, we demonstrate nickel-catalyzed defluorinative cross-coupling [22][23][24][25][26][27][28][29][30][31][32][33][34][35][36][37] of 2-fluorobenzofurans 1 with arylboronic acids 2 at ambient temperature, with nickelacyclopropanes E serving as crucial intermediates for the

Cu(OTf)₂-catalyzed multicomponent reactions

• Sara Colombo,
• Camilla Loro,
• Egle M. Beccalli,
• Gianluigi Broggini and
• Marta Papis

Beilstein J. Org. Chem. 2025, 21, 122–145, doi:10.3762/bjoc.21.7

• reaction proceeds through an initial single-electron transfer from NFBS assisted by the active copper species, followed by intermolecular hydrogen-atom transfer from the carbazate. The nitrogen radical intermediate I thus formed is decomposed into the acyl or alkyl radical intermediates II and III

• additive. Some control experiments support a mechanism whose key intermediates are the formation of the iminium ion XIX, originated from aniline with formaldehyde which serves as the C1 building block, and the generation of the cyclic α,β-unsaturated ethers XX by Cu(OTf)2-catalyzed dehydrogenation of the

Recent advances in organocatalytic atroposelective reactions

• Henrich Szabados and
• Radovan Šebesta

Beilstein J. Org. Chem. 2025, 21, 55–121, doi:10.3762/bjoc.21.6

• enantioselectivities (Scheme 13). Axially chiral compounds with an N–N stereogenic axis can be synthesized by an NHC-catalyzed (3 + 3) annulation [33]. The key feature of this transformation is the cycloaddition of α,β-unsaturated azolium intermediates with thioureas. In this way, a range of diversely substituted N–N

• -Breslow-type intermediates with the chiral NHC-catalyst and subsequent deprotonation toward the nitrile product. Zhang, Wang, Ye, and co-workers utilized NHC-catalysis for the atroposelective synthesis of axially chiral diaryl ethers 59 and 61 [38]. This transformation was realized via desymmetrization of

Emerging trends in the optimization of organic synthesis through high-throughput tools and machine learning

• Pablo Quijano Velasco,
• Kedar Hippalgaonkar and
• Balamurugan Ramalingam

Beilstein J. Org. Chem. 2025, 21, 10–38, doi:10.3762/bjoc.21.3

• intermediates. A detailed discussion on the optimization strategy is described in the section Machine-learning-driven optimization of chemical reactions. Robochem, a HTE platform, was designed to streamline the screening of photochemical reactions, facilitating the rapid generation of diverse reaction mixtures

Reactivity of hypervalent iodine(III) reagents bearing a benzylamine with sulfenate salts

• Beatriz Dedeiras,
• Catarina S. Caldeira,
• José C. Cunha,
• Clara S. B. Gomes and
• M. Manuel B. Marques

Beilstein J. Org. Chem. 2024, 20, 3281–3289, doi:10.3762/bjoc.20.272

• 5aa (Table 1, entry 2) but with prior degassed solvent (DMF), to prevent potential oxidation of the sulfenate to sulfinate anions. Indeed, the oxidation of the unstable sulfenate intermediates has been previously reported by Waser when using EBX – an HIR applied in the transfer of alkynes to sulfenate

Non-covalent organocatalyzed enantioselective cyclization reactions of α,β-unsaturated imines

• Sergio Torres-Oya and
• Mercedes Zurro

Beilstein J. Org. Chem. 2024, 20, 3221–3255, doi:10.3762/bjoc.20.268

• the field, other dienes bearing two nitrogen atoms in their structure such as 1,3-azadienes or azo-alkenes are also included. On the contrary, asymmetric cyclizations involving aza-ortho-quinone intermediates and in situ-formed 1-azadienes were excluded as they have been discussed in other recent

Direct trifluoroethylation of carbonyl sulfoxonium ylides using hypervalent iodine compounds

• Radell Echemendía,
• Carlee A. Montgomery,
• Fabio Cuzzucoli,
• Antonio C. B. Burtoloso and
• Graham K. Murphy

Beilstein J. Org. Chem. 2024, 20, 3182–3190, doi:10.3762/bjoc.20.263

• versatile intermediates in organic synthesis due to their unique reactivity and ability to participate in a wide range of chemical transformations. In this scenario, sulfoxonium ylides are excellent substrates for bifunctionalization reactions, due to the ambiphilic character in their ylidic carbon [16

• met convergence criteria. Consistent with the PES scan outcome, the NEB-CI approach also indicated that the SN2 mechanistic proposal (Figure 2, path 2) dominates. Finally, for both mechanistic pathways, all intermediates and transition states were subjected to optimization and frequency calculations

Multicomponent reactions driving the discovery and optimization of agents targeting central nervous system pathologies

• Lucía Campos-Prieto,
• Aitor García-Rey,
• Eddy Sotelo and
• Ana Mallo-Abreu

Beilstein J. Org. Chem. 2024, 20, 3151–3173, doi:10.3762/bjoc.20.261

• obtained intermediates with the appropriate commercial lactams, under microwave irradiation (Scheme 8). As a result, compound 8a has been identified as a promising derivative potentially useful in further AD drug discovery for its antioxidant activity (4.7 TE in ORAC-FL assay), moderate hAChE inhibition

• build the principal heterocycle of the compounds. Good reaction yields (70–87%) made it possible to obtain the aminothiophene carboxylates necessary for the following steps of the route [52]. Some of the intermediates of the Gewald reaction were oxidized to provide further exploration of the

Controlled oligomerization of [1.1.1]propellane through radical polarity matching: selective synthesis of SF₅- and CF₃SF₄-containing [2]staffanes

• Jón Atiba Buldt,
• Wang-Yeuk Kong,
• Yannick Kraemer,
• Masiel M. Belsuzarri,
• Ansh Hiten Patel,
• James C. Fettinger,
• Dean J. Tantillo and
• Cody Ross Pitts

Beilstein J. Org. Chem. 2024, 20, 3134–3143, doi:10.3762/bjoc.20.259

• becomes more negative (or less positive) the farther it is from either the SF5 or CF3SF4 substituent, consistent with the notion that it becomes more nucleophilic. Moreover, the Δq is largest between the first two intermediates in both series – INT1 vs INT2 and INT3 vs INT4 – indicating that the most

• synthetic and computational study demonstrates that selective one-pot syntheses of [2]staffanes can be achieved when employing reagents that serve as radical sources of "extreme" electron-withdrawing groups (e.g., SF5 or CF3SF4), which impact relative philicities of the bicyclopentyl radical intermediates

Hypervalent iodine-mediated intramolecular alkene halocyclisation

• Charu Bansal,
• Oliver Ruggles,
• Albert C. Rowett and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 3113–3133, doi:10.3762/bjoc.20.258

• pyrrolidine intermediates A can undergo further transformations (Scheme 10), depending on their structure and the iodane reagent being used. For example, higher yields of 3-fluoropiperidine products 6 were observed when using cyclic iodane reagents 21 and 22 (Scheme 10), which was suggested to be because a

Advances in the use of metal-free tetrapyrrolic macrocycles as catalysts

• Mandeep K. Chahal

Beilstein J. Org. Chem. 2024, 20, 3085–3112, doi:10.3762/bjoc.20.257

• reversible formation of covalent enamine intermediates, it also leveraged the supramolecular behavior of the porphyrinic component. In acidic aqueous media, the porphyrin macrocycle formed supramolecular H- and J-aggregates stabilized by hydrophobic interactions between the π-systems of the aromatic regions

• porphyrin radical anion. Ultimately, protonation of intermediate E led to the final product. Formation of intermediates, such as enamine A and cation radical B, was confirmed using techniques like ESIMS, 1H NMR, and EPR, Stern–Volmer quenching experiments, respectively. All these mechanistic studies

Synthesis of the 1,5-disubstituted tetrazole-methanesulfonylindole hybrid system via high-order multicomponent reaction

• Cesia M. Aguilar-Morales,
• América A. Frías-López,
• Nadia V. Emilio-Velázquez,
• Alejandro Islas-Jácome,
• Angelica Judith Granados-López,
• Jorge Gustavo Araujo-Huitrado,
• Yamilé López-Hernández,
• Hiram Hernández-López,
• Luis Chacón-García,
• Jesús Adrián López and
• Carlos J. Cortés-García

Beilstein J. Org. Chem. 2024, 20, 3077–3084, doi:10.3762/bjoc.20.256

• of the 1,5-disubstituted tetrazole-alkyne intermediates was unnecessary; we previously reported this heterocyclic system [24][25][26]. The heteroannulation reaction was then investigated under the most common conditions, utilizing a catalytic system comprising PdCl2(PPh3)2, Et3N and CuI [23][28

Enantioselective regiospecific addition of propargyltrichlorosilane to aldehydes catalyzed by biisoquinoline N,N’-dioxide

• Noble Brako,
• Sreerag Moorkkannur Narayanan,
• Amber Burns,
• Layla Auter,
• Valentino Cesiliano,
• Rajeev Prabhakar and
• Norito Takenaka

Beilstein J. Org. Chem. 2024, 20, 3069–3076, doi:10.3762/bjoc.20.255

• enantioenriched form [11][12]. However, such metal/metalloid reagents and the corresponding metal catalyst-bound intermediates often equilibrate between possible regioisomeric forms and can undergo both, SE2 and SE2’ addition reactions, resulting in a mixture of homopropargylic alcohols and α-allenic alcohols [14

• ][15][16][17][18][19], the separation of which is by no means trivial [20] (Scheme 1). Nonetheless, substituents at the carbon atom indicated by γ (R2) of these reagents have been shown to bias the metallotropic rearrangement and/or the kinetic reactivity of the competing regioisomeric intermediates

• exergonic from Rprop. These results show that the presence of N,N-diisopropylethylamine as base makes this process more energetically feasible by substantially stabilizing the transition states and intermediates in the pathway. These results are strongly supported by the experimental data. In a previous

Chemical structure metagenomics of microbial natural products: surveying nonribosomal peptides and beyond

• Thomas Ma and
• John Chu

Beilstein J. Org. Chem. 2024, 20, 3050–3060, doi:10.3762/bjoc.20.253

• the glycopeptide antibiotic family [62][63]. Their aromatic rings undergo oxidative coupling to form biaryl moieties that restrict atropisomerism; the resulting rigid structure is key to their high affinity binding to peptidoglycan intermediates [64][65]. Glycopeptide antibiotics include vancomycin

Tailored charge-neutral self-assembled L₂Zn₂ container for taming oxalate

• David Ocklenburg and
• David Van Craen

Beilstein J. Org. Chem. 2024, 20, 3007–3015, doi:10.3762/bjoc.20.250

• ; metallocontainer; oxalate; Introduction Dicarboxylic acids and their corresponding anions are essential intermediates in the biosynthesis of proteins and important biological metabolites [1][2]. As a result, the development of receptors for this class of compounds is of high interest [3][4][5]. Oxalate, the

Advances in radical peroxidation with hydroperoxides

• Oleg V. Bityukov,
• Pavel Yu. Serdyuchenko,
• Andrey S. Kirillov,
• Gennady I. Nikishin,
• Vera A. Vil’ and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2024, 20, 2959–3006, doi:10.3762/bjoc.20.249

• involving radical intermediates from hydroperoxides under redox conditions (Scheme 3). The reactivity of O-centered radicals is less predictable and more diverse depending on radical structure and substrate pattern than the chemistry of C-centered radicals [29][30]. Generally, peroxy radicals have a

• partners in the difunctionalization of alkenes 169 and 172 with hydroperoxides, respectively (Scheme 53a and Scheme 53b). According to the authors [121], the key intermediates are the Co(III)OO-t-Bu and the CF3 radicals, which are generated from Co(OAc)2 and CF3SO2Na in the presence of TBHP. In the case of

• intermediates (tert-butylperoxy radical or Mn(III)(OAc)2OO-t-Bu) can occur via oxidation of TBHP with Mn(OAc)3 or via ligand exchange between acetate and TBHP. The Mn(OAc)3 is regenerated by oxidation of Mn(OAc)2 with TBHP. The tert-butylperoxy radical reacts with styrene 194 to give the stabilized benzyl

Recent advances in transition-metal-free arylation reactions involving hypervalent iodine salts

• Ritu Mamgain,
• Kokila Sakthivel and
• Fateh V. Singh

Beilstein J. Org. Chem. 2024, 20, 2891–2920, doi:10.3762/bjoc.20.243

• presence of fluorine and a newly installed electron-deficient aryl group on α-carbon which increases electrophilicity of the α-carbon center [55]. The proposed reaction mechanism (Scheme 2) begins with the formation of one of two potential iodine intermediates, labeled as I or II. These intermediates arise

• upon binding of the enolate molecule to iodine either through a carbon–iodine or an oxygen–iodine bond. Both intermediates, I and II, are in rapid equilibrium with each other and further undergo two different types of reactions: [1,2]-ligand coupling and [2,3]-rearrangement (Scheme 2). Either of these

• base-mediated deprotonation of substrates 86 produces the corresponding ester enolate. This enolate undergoes a retro-Michael reaction, generating sulfenate anion A. The sulfenate anion A then nucleophilically attacks the diaryliodonium salts 16, forming hypervalent iodine intermediates B. Finally

Synthesis of tricarbonylated propargylamine and conversion to 2,5-disubstituted oxazole-4-carboxylates

• Kento Iwai,
• Akari Hikasa,
• Kotaro Yoshioka,
• Shinki Tani,
• Kazuto Umezu and
• Nagatoshi Nishiwaki

Beilstein J. Org. Chem. 2024, 20, 2827–2833, doi:10.3762/bjoc.20.238

• biologically active compounds [27][28][29][30][31] and their synthetic intermediates [32][33][34][35][36]. Thus, this method, which enables modification at the 2- and 5-positions of oxazole-4-carboxylates, is a valuable tool for the study of these compounds. Experimental General All reagents except for DEMO

Synthesis and antimycotic activity of new derivatives of imidazo[1,2-a]pyrimidines

• Dmitriy Yu. Vandyshev,
• Daria A. Mangusheva,
• Khidmet S. Shikhaliev,
• Kirill A. Scherbakov,
• Oleg N. Burov,
• Alexander D. Zagrebaev,
• Tatiana N. Khmelevskaya,
• Alexey S. Trenin and
• Fedor I. Zubkov

Beilstein J. Org. Chem. 2024, 20, 2806–2817, doi:10.3762/bjoc.20.236

• conversion of the reagents was not achieved until after 12 h of boiling, and the yield of the product varied in the range of 25–35% (entries 1 and 2, Table 1). In the cases of DMF and MeCN, the formation of complex, inseparable mixtures of numerous intermediates and products of their subsequent

• polyfunctional precursors 1, 2, and 3, two pathways are theoretically possible (Scheme 2 and Scheme 3). The first one involves the N-nucleophilic Michael addition to the activated multiple bond of the imide, leading to the formation of linear intermediates 6 or 8 (pathways A1 and B1) at the expense of the endo

• -nitrogen atom. The second route involves the participation of an amino group which allows the formation of adducts 7 and 9 (routes A2 and B2). The intermediates formed then undergo subsequent tandem recyclization of succinimide/citraconimide fragments at the expense of one of the carbonyl groups and the