From perfluoroalkyl aryl sulfoxides to ortho thioethers

• Yang Li,
• Guillaume Dagousset,
• Emmanuel Magnier and
• Bruce Pégot

Beilstein J. Org. Chem. 2024, 20, 2108–2113, doi:10.3762/bjoc.20.181

• strategy to improve or modulate their physicochemical and biological properties [41][42][43][44][45], only few publications have reported a [3,3]-rearrangement with fluorinated molecules (Scheme 1c). In 2020, Wang and co-workers have developed a one-pot [3,3]-sigmatropic rearrangement/Haller–Bauer reaction

• of aryl sulfoxides with difluoroenoxysilanes as nucleophile under mild reaction conditions [46]. This provided access to organosulfur compounds ortho-functionalized by CF2H. At the same time Peng and co-workers described the dearomatization of aryl sulfoxides using the same difluoroenol silyl ether

• (Scheme 1d). It is important to mention that during the preparation of this paper, a similar study appeared. Peng and co-workers demonstrated the efficient use of acetonitrile as nucleophile with various aryl difluoroalkyl sulfoxides but only one example of an SCF3 compound was reported [49]. Results and

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• search space, can be done by comparing the target protein to related proteins or those co-crystallised with ligands [103] and manually superimposing the new ligand to the reference structure. Some payment software like Glide [116][117], GOLD [118] and Molecular Operating Environment (MOE) dock [119] can

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• aliphatic alkynes, copper iodide is necessitated as a co-catalyst [141]. In addition to classic Sonogashira catalysts, phosphane-free palladium [Pd(NN)] chelate complexes can also be used, which promote excellent regioselectivity [142]. A variation of the reaction is possible with Mo(CO)6 as a carbon

• palladium-catalyzed oxidative carbonylative Sonogashira alkynylation and cyclocondensation with arylhydrazines [144]. In 2009, Müller and co-workers introduced an alternative approach for synthesizing alkynones through a one-pot process [145]. Azulen-3-ylalkynones 126, obtained by glyoxylation of azulene

Diastereoselective synthesis of highly substituted cyclohexanones and tetrahydrochromene-4-ones via conjugate addition of curcumins to arylidenemalonates

• Deepa Nair,
• Abhishek Tiwari,
• Banamali Laha and
• Irishi N. N. Namboothiri

Beilstein J. Org. Chem. 2024, 20, 2016–2023, doi:10.3762/bjoc.20.177

• -arylidene-1,3-indandiones was reported by Zhang and co-workers using quinine as a catalyst, giving multicyclic spiro-1,3-indandiones in moderate yields with enantioselectivities as well as diastereoselectivities [39]. However, to the best of our knowledge, arylidenemalonates have not been employed as

Understanding X-ray-induced isomerisation in photoswitchable surfactant assemblies

• Beatrice E. Jones,
• Camille Blayo,
• Jake L. Greenfield,
• Matthew J. Fuchter,
• Nathan Cowieson and
• Rachel C. Evans

Beilstein J. Org. Chem. 2024, 20, 2005–2015, doi:10.3762/bjoc.20.176

• brilliance of synchrotron X-ray sources enables the mechanisms of structural changes in PS to be studied, using in-situ light irradiation with time-resolved data collection. For example, Tribet and co-workers used this approach to explore the kinetics of micellisation and dissolution of cationic Azo-PS, both

1,2-Difluoroethylene (HFO-1132): synthesis and chemistry

• Liubov V. Sokolenko,
• Taras M. Sokolenko and
• Yurii L. Yagupolskii

Beilstein J. Org. Chem. 2024, 20, 1955–1966, doi:10.3762/bjoc.20.171

• catalyst (Pd, Pd, Pt, Rh, Ru, Ir, Ni/Cu, Ag, Au, Zn, Cr, Co, Scheme 5) [62][63]. Further, 1,2-Dichloroethylene was reacted with hydrogen fluoride in the presence of metal fluorides or transition metals (Cr, Al, Co, Mn, Ni, Fe) to form 1,2-difluoroethylene (Scheme 6) [56][58]. In patents [59][60], an exotic

• and co-workers [93]. Therein, a mixture of products, with diethyl 2-chloro-1,2-difluoroethylphosphonate as main compound, was formed (Scheme 15). This mixture was reacted with absolute ethanol, and the esters formed were separated by distillation and characterized. The authors did not point out which

• case was predominant over [2 + 2]-cycloadducts. Reactions involving C–F bonds It was shown by Liu and co-workers that SiF2 was able to insert into the C–F bond of 1,2-difluoroethylene, as well as into the emerging Si–F bond, leading to a mixture of fluoropolysilanes with a low combined yield (Scheme 24

2-Heteroarylethylamines in medicinal chemistry: a review of 2-phenethylamine satellite chemical space

• Carlos Nieto,
• Alejandro Manchado,
• Ángel García-González,
• David Díez and
• Narciso M. Garrido

Beilstein J. Org. Chem. 2024, 20, 1880–1893, doi:10.3762/bjoc.20.163

• ). Histaprodifen 64 is a potent H1 receptor agonist with a 3,3-diphenylpropyl moiety at position 2 of the imidazole ring characterized by Elz and co-workers [58]. The authors showed parent compound 64 and methylated derivatives 65 and 66 were potent H1 receptor agonists in pithed and anaesthetized rats (Scheme 11

• , Menghin and co-workers [61] explored flexible chain incorporations at the terminal nitrogen of histaprodifen generating hits 79–86 (Scheme 11). Finally, the N,N-bis(2-imidazolyl)ethyl)-substituted amine superhistaprodifen 87 cluster was exhaustively synthesized and tested for their agonist activity

• against chloroquine-sensitive and resistant Plasmodium falciparium strains in mice were reported by Jain and co-workers [65]. Initially, these authors developed simple halohistidine derivatives as first generation analogues showing successful in vitro antimalarial activity. Prompted by these findings, a

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

Discovery of antimicrobial peptides clostrisin and cellulosin from Clostridium: insights into their structures, co-localized biosynthetic gene clusters, and antibiotic activity

• Moisés Alejandro Alejo Hernandez,
• Katia Pamela Villavicencio Sánchez,
• Rosendo Sánchez Morales,
• Karla Georgina Hernández-Magro Gil,
• David Silverio Moreno-Gutiérrez,
• Eddie Guillermo Sanchez-Rueda,
• Yanet Teresa-Cruz,
• Brian Choi,
• Armando Hernández Garcia,
• Alba Romero-Rodríguez,
• Oscar Juárez,
• Siseth Martínez-Caballero,
• Mario Figueroa and
• Corina-Diana Ceapă

Beilstein J. Org. Chem. 2024, 20, 1800–1816, doi:10.3762/bjoc.20.159

• , including one super-cluster containing two co-localized operons from Clostridium cellulovorans 743B, that encode for two new peptides named clostrisin and cellulosin. Each operon was heterologously expressed in Escherichia coli. Molecular weights associated with the expected post-translational modifications

• was co-expressed with the corresponding precursor peptide in the same E. coli strain (expected size 150 kDa). The precursor peptides and the peptidase domain of CloPt1 were fused with a 6xHis tag at their N-terminal end for purification purposes (Figure S7 in Supporting Information File 1). After

• predictions suggesting that this should be a functional system. This lack of modification could be due to the amino acid sequence of the precursor, which differs from those described in the literature, or to mutations in the CloM1 enzyme. These mutations may require additional co-factors or specific

Oxidative fluorination with Selectfluor: A convenient procedure for preparing hypervalent iodine(V) fluorides

• Samuel M. G. Dearman,
• Xiang Li,
• Yang Li,
• Kuldip Singh and
• Alison M. Stuart

Beilstein J. Org. Chem. 2024, 20, 1785–1793, doi:10.3762/bjoc.20.157

• multiple extractions into hexane under a nitrogen atmosphere in a glovebox. A similar synthetic approach to acyclic iodine(V) fluorides was developed more recently by Ismalaj and co-workers by reacting iodoarenes with 6 equivalents of KF and ex situ-generated chlorine gas within a two-chamber reactor setup

Ugi bisamides based on pyrrolyl-β-chlorovinylaldehyde and their unusual transformations

• Alexander V. Tsygankov,
• Vladyslav O. Vereshchak,
• Tetiana O. Savluk,
• Serhiy M. Desenko,
• Valeriia V. Ananieva,
• Oleksandr V. Buravov,
• Yana I. Sakhno,
• Svitlana V. Shishkina and
• Valentyn A. Chebanov

Beilstein J. Org. Chem. 2024, 20, 1773–1784, doi:10.3762/bjoc.20.156

• acid hydrolysis. Similar results were obtained by Dömling and co-workers [27], who used 2-nitrobenzyl isocyanide as a universal convertible isocyanide, and the amide group was also converted into a carboxylic acid under the conditions of acid hydrolysis (Scheme 2). Therefore, taking into account the

Synthesis of polycyclic aromatic quinones by continuous flow electrochemical oxidation: anodic methoxylation of polycyclic aromatic phenols (PAPs)

• Hiwot M. Tiruye,
• Solon Economopoulos and
• Kåre B. Jørgensen

Beilstein J. Org. Chem. 2024, 20, 1746–1757, doi:10.3762/bjoc.20.153

• dimers, which indicates a radical intermediate [36]. Swenton and co-workers [37] established evidence for the phenoxonium ion (Scheme 1), and were further able to divert the reaction into forming ortho-oxidation due to steric hindrance (Scheme 2). Cyclic voltammetry studies of the oxidation of 2-naphthol

Syntheses and medicinal chemistry of spiro heterocyclic steroids

• Laura L. Romero-Hernández,
• Ana Isabel Ahuja-Casarín,
• Penélope Merino-Montiel,
• Sara Montiel-Smith,
• José Luis Vega-Báez and
• Jesús Sandoval-Ramírez

Beilstein J. Org. Chem. 2024, 20, 1713–1745, doi:10.3762/bjoc.20.152

• final CO insertion to release the ester. After an acid hydrolysis which produced 36, a basic treatment induced the condensation reaction to yield the heterocycle 37 in 99% yield. This reaction sequence was also applied to the acetates of ethisterone and ethynylestradiol, resulting in similar yields in

• yields (82–85%) (Scheme 28). The authors proposed a free radical mechanism facilitated by hydrogen peroxide, generating a primary radical at the terminal nitrogen atom -CO-HN• which then adds to the carbon atom of the imino group. The reaction mechanism was substantiated by theoretical calculations

• . According to the mechanism, the heterocyclic ring closes by the attack of the bulky radical -CO-HN• over the α steroidal side to circumvent the 1,3-diaxial interaction with the methyl group at C-10. Spiro-1,3,4-oxadiazoline steroid Shamsuzzaman et al. achieved the synthesis of 5’-acetamido-3’-acetyl-(3R

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• pathway of brassicicenes in Pseudocercospora fijiensis is outlined based on an investigation by Oikawa and co-workers [23]. The biosynthesis begins with the conversion of farnesyl pyrophosphate (FPP) and isopentenyl pyrophosphate (IPP) to geranylgeranyl pyrophosphate (GGPP), catalyzed by the

• I (9). As a pioneering investigation to elucidate the mechanism of this essentially identical allylic oxidations by Fe(II)/2OG-dependent dioxygenase, Dairi and co-workers conducted in vitro enzymatic conversions with the homologous enzyme Bsc9, derived from Alternaria brassicicola ATCC96836 [24

• , and subsequent reduction of the exomethylene at C11–C18 catalyzed by BscH yield brassicicene O (12). Renata and co-workers successfully accomplished the chemoenzymatic total syntheses of cotylenol (1) and nine brassicicenes (Scheme 3) [19]. In the cyclization phase, a suitably functionalized 5/8/5

A fiber-optic spectroscopic setup for isomerization quantum yield determination

• Anouk Volker,
• Jorn D. Steen and
• Stefano Crespi

Beilstein J. Org. Chem. 2024, 20, 1684–1692, doi:10.3762/bjoc.20.150

• solar cell detectors now being commercially available at a reasonable cost, instructions for building laboratory apparatus for quantum yield determination using direct measurement of photon flux using solar cell detectors have been reported by Riedle and co-workers [44][45]. With the design reported by

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• ) as a co-product, which strongly inhibits various MTs [16][17][18][19]. To overcome these limitations, numerous in situ SAM supply and SAM regeneration systems have been developed [4][20][21][22][23][24][25][26], thereby enabling preparative biocatalytic scale methylation reactions [27]. Such

• biocatalytic applications. The co-crystallisation of LahSB with bound SAH provides important details about the structure–function relationship, the substrate–enzyme interaction, and the cofactor binding site (Figure 5). This structural information, including the residues involved in binding, is essential for

• cyclised core peptide to exert its effects on the precursor peptide. Furthermore, SAM was shown to be an obligate co-substrate for OlvSA [71]. Crystallographic data of OlvSA is not yet available. The predicted three-dimensional structure displays substantial differences from the crystal structure of LahSB

Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty

• Weimao Zhong and
• Vinayak Agarwal

Beilstein J. Org. Chem. 2024, 20, 1635–1651, doi:10.3762/bjoc.20.146

• NRPS-derived macrolactam ureidopeptide, bulbiferamide (27, Figure 10), was isolated and characterized from a coral-derived Microbulbifer sp. C10-1 by Igarashi and co-workers [7]. The ureido linkage did not allow for the peptide main chain in 27 to possess a terminal primary amine and none of the side

• pseudobulbiferamides in Microbulbifer and pseudovibriamides in Pseudovibrio are quite similar and are located on plasmids, rather than chromosomal DNA. With the observation that Pseudovibrio and Microbulbifer co-inhabit commensal microbiomes of marine animals, it is tantalizing to speculate that this plasmid borne BGC

New triazinephosphonate dopants for Nafion proton exchange membranes (PEM)

• Fátima C. Teixeira,
• António P. S. Teixeira and
• C. M. Rangel

Beilstein J. Org. Chem. 2024, 20, 1623–1634, doi:10.3762/bjoc.20.145

• exchange membrane devices [5][6], such as proton exchange membrane fuel cells (PEMFCs) [3][7][8][9], due to their high-power density and high power-to-weight ratio, and CO2 electrolysers, which can reduce the polluting gas CO2 and produce syngas from the co-electrolysis of CO2 and water [10][11], or water

pKalculator: A pK_a predictor for C–H bonds

• Rasmus M. Borup,
• Nicolai Ree and
• Jan H. Jensen

Beilstein J. Org. Chem. 2024, 20, 1614–1622, doi:10.3762/bjoc.20.144

• complex molecules by exchanging a C–H bond with different functional groups to modify the biological activity of drugs [2]. However, pinpointing which C–H bond is reacting can be challenging. Grzybowski and co-workers recently addressed this gap by predicting pKa values for C–H bonds in dimethyl sulfoxide

• (DMSO) using a graph convolutional neural network (GCNN) [3]. Using a mix of experimental and computed pKa data, they achieved a mean absolute error (MAE) of 2.1 pKa units. Lee and co-workers also addressed this problem by creating a general machine learning (ML) model using either a neural network or

• database only contains an image of each molecule, we employ the “Deep Learning for Chemical Image Recognition” software (DECIMER v. 2.0), developed by Rajan and co-workers [8][9][10]. While DECIMER converts molecular images into SMILES, manual intervention is required to ensure the SMILES string correctly

Electrocatalytic hydrogenation of cyanoarenes, nitroarenes, quinolines, and pyridines under mild conditions with a proton-exchange membrane reactor

• Koichi Mitsudo,
• Atsushi Osaki,
• Haruka Inoue,
• Eisuke Sato,
• Naoki Shida,
• Mahito Atobe and
• Seiji Suga

Beilstein J. Org. Chem. 2024, 20, 1560–1571, doi:10.3762/bjoc.20.139

• Supporting Information File 16: Experimental part. Acknowledgements The authors thank Prof. Yuta Nishina (Okayama University) and his group members for their help in preparing the MEA. The authors also thank Ishifuku Metal Industry Co., Ltd. and De Nora Permelec Ltd. for providing the catalysts and DSE

Benzylic C(sp³)–H fluorination

• Alexander P. Atkins,
• Alice C. Dean and
• Alastair J. J. Lennox

Beilstein J. Org. Chem. 2024, 20, 1527–1547, doi:10.3762/bjoc.20.137

• have been used to effect the transformation of benzylic C(sp3)–H to C(sp3)–F bonds [22]. Shreeve and co-workers reported the use of KOH or n-BuLi to deprotonate acidic protons at benzylic positions adjacent to electron-withdrawing nitro or nitrile groups, respectively, generating benzylic anions that

• monofluorination of tertiary benzylic C(sp3)–H bonds adjacent to nitro groups was reported by Loghmani-Khouzani and co-workers in 2006, in which ammonium acetate and Selectfluor were employed under sonochemical conditions to effect the fluorination (Figure 3) [35]. The authors noted that the use of sonochemistry

• afforded higher yields and shorter reaction times compared to standard stirring conditions with DBU. When employing substrates bearing secondary benzylic sites in the reaction conditions, the difluorinated products were observed exclusively in high yields. In 2016, Britton and co-workers reported a method

Electrophotochemical metal-catalyzed synthesis of alkylnitriles from simple aliphatic carboxylic acids

• Yukang Wang,
• Yan Yao and
• Niankai Fu

Beilstein J. Org. Chem. 2024, 20, 1497–1503, doi:10.3762/bjoc.20.133

• -known to be highly susceptible to electroplating on the cathode and thus require the use of ligands to avoid detrimental cathode deposition during electrolysis (Table 1, entry 3). In addition, we discovered that the additional use of DMF as co-solvent is beneficial to the reaction efficiency–reactions

Bioinformatic prediction of the stereoselectivity of modular polyketide synthase: an update of the sequence motifs in ketoreductase domain

• Changjun Xiang,
• Shunyu Yao,
• Ruoyu Wang and
• Lihan Zhang

Beilstein J. Org. Chem. 2024, 20, 1476–1485, doi:10.3762/bjoc.20.131

• rings. The triangles indicate a product having α-substituents. (c) Crystal structure of DH-ER-KR tridomain (PDB ID 8G7W) [24]. DH, KRS, ER, KRC are colored in cyan, pink, yellow, and purple, respectively. The lid of KR catalytic pocket is colored in red. The co-crystallized cofactor is represented as

• Information File 1. (a) The position of fingerprint motifs in the KR structure (AmpKR2, A1-type, PDB ID 5XWV) [29]. Fingerprints are shown as sticks. The co-crystallized substrate mimic and co-factor are shown as lines. (b) Sequence logo comparation of the core moiety of β-module KRC based on the

Synthesis of 2-benzyl N-substituted anilines via imine condensation–isoaromatization of (E)-2-arylidene-3-cyclohexenones and primary amines

• Lu Li,
• Na Li,
• Xiao-Tian Mo,
• Ming-Wei Yuan,
• Lin Jiang and
• Ming-Long Yuan

Beilstein J. Org. Chem. 2024, 20, 1468–1475, doi:10.3762/bjoc.20.130

• of anilines through Brønsted acid or transition-metal-promoted conversion of 2-cyclohexanone oximes [15][16][17][18] (Scheme 1, (2)). Moreover, Strauss and co-workers described a green, multicomponent reaction of aromatic aldehydes, 2-cyclohexenone and amines to afford 2-arylmethyl N-substituted

Predicting bond dissociation energies of cyclic hypervalent halogen reagents using DFT calculations and graph attention network model

• Yingbo Shao,
• Zhiyuan Ren,
• Zhihui Han,
• Li Chen,
• Yao Li and
• Xiao-Song Xue

Beilstein J. Org. Chem. 2024, 20, 1444–1452, doi:10.3762/bjoc.20.127

• iodine [61][62][63][64][65][66][67][68][69][70][71][72][73][74][75][76] and the computational database of organic species by Paton and co-workers [77], geometry optimizations and single point energy calculations for homolytic BDEs are both performed using M06-2X/def2-TZVPP [78][79][80] in the gas phase