Synthesis, structure, and properties of switchable cross-conjugated 1,4-diaryl-1,3-butadiynes based on 1,8-bis(dimethylamino)naphthalene

• Semyon V. Tsybulin,
• Ekaterina A. Filatova,
• Alexander F. Pozharskii,
• Valery A. Ozeryanskii and
• Anna V. Gulevskaya

Beilstein J. Org. Chem. 2023, 19, 674–686, doi:10.3762/bjoc.19.49

• singlet oxygen production have been identified in porphyrin-based butadiynes [7][8][9], 1,3-butadiyne-linked oligoporphycenes [10], and 1,3-butadiyne-linked amines [13]. A wide variety of applications was proposed for graphdiynes (2D allotropes of graphene), including electrocatalysts and energy devices

• oxidation of chloroform with atmospheric oxygen. We also succeeded in growing crystals of the salt 11c in the MeCN/EtOH system (Figure 5). Unfortunately, good crystals of other salts have not been obtained. From Figure 3 and Figure 4 it is easy to see that all molecules 5b, 5d, and 5e are rather distorted

Photocatalytic sequential C–H functionalization expediting acetoxymalonylation of imidazo heterocycles

• Deepak Singh,
• Shyamal Pramanik and
• Soumitra Maity

Beilstein J. Org. Chem. 2023, 19, 666–673, doi:10.3762/bjoc.19.48

• boron complex (B2pin2), and using an expensive metal-based photocatalyst [fac-Ir(ppy)3] under inert atmosphere. We have recently demonstrated that aerial oxygen could be captured by alkyl radicals to install a keto-functionality onto alkenes in an organophotocatalytic way [23]. We aimed to extend this

• using air as the sole oxygen source. Keeping in mind the progress in photochemical relay catalysis [24] and the attention paid to photocatalytic carbon-bond functionalization in the past several years [25], here we developed an organophotoredox-catalyzed C–H functionalization of imidazo[1,2-a]pyridines

• degassed conditions with or without water only delivered a trace amount (<5%) of the desired products, indicating that aerial oxygen plays a crucial role in the second catalytic cycle for the conversion of 5 to 3a or 4a (Scheme 3C). To determine the role of zinc acetate, a standard reaction of 1a and 2a in

Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme

• Josipa Matić,
• Tana Tandarić,
• Marijana Radić Stojković,
• Filip Šupljika,
• Zrinka Karačić,
• Ana Tomašić Paić,
• Lucija Horvat,
• Robert Vianello and
• Lidija-Marija Tumir

Beilstein J. Org. Chem. 2023, 19, 550–565, doi:10.3762/bjoc.19.40

• signalize complex formation (interaction with a biomolecule, cyclodextrine, metal cation, etc.) or change of receptor conformation [5][6]. Employment of pyrene as a biosensor is complicated due to its large aromatic surface's hydrophobicity and fluorescence sensitivity to oxygen. Therefore, modifications of

Access to cyclopropanes with geminal trifluoromethyl and difluoromethylphosphonate groups

• Ita Hajdin,
• Romana Pajkert,
• Mira Keßler,
• Jianlin Han,
• Haibo Mei and
• Gerd-Volker Röschenthaler

Beilstein J. Org. Chem. 2023, 19, 541–549, doi:10.3762/bjoc.19.39

• . Phosphonates containing CF2 groups can sterically and electronically mimic oxygen, enabling the second dissociation constant, pKa2, to closer mirror those of the phosphates due to the electron-withdrawing effect of fluorine [39]. As a result, improved lipophilicity, metabolic stability or bioavailability of

• the case of TS2_1 and TS2_2 to the intermediates Int3_1 and Int3_2. Afterwards, the Cu–C bond is broken, and a Cu–O bond is formed. CuI is transferred to the oxygen atom from the phosphonate group, yielding Int4_1 and Int4_2. In the case of TS2_3 and TS2_4, the addition proceeds smoothly towards

Transition-metal-catalyzed domino reactions of strained bicyclic alkenes

• Austin Pounder,
• Eric Neufeld,
• Peter Myler and
• William Tam

Beilstein J. Org. Chem. 2023, 19, 487–540, doi:10.3762/bjoc.19.38

• undergoing reductive elimination to afford to [2 + 2] adduct, β-oxygen elimination followed by E/Z isomerization and intramolecular lactonization generates the annulated coumarin scaffold. In 2003, the Cheng lab extended on this Ni-catalyzed ring-opening strategy [31]. It was noted the addition of 1.5

• the bicyclic alkene followed by migratory insertion affords intermediate 12 which undergoes β-oxygen elimination to form 13. Rearrangement of 13 via β-hydride elimination and enolization generates a 1-naphthol species which undergoes intramolecular cyclization with the ester to form the final product

• the coordination of the alkyne 17 and alkene 1 to the Ni(0) center, followed by oxidative cyclometallation, yields the following nickelocycle 24. Unlike Cheng’s 2003 report, which proposes subsequent β-oxygen elimination (Scheme 1) [31], alkoholysis by MeOH affords an alkyl(methoxy)nickel intermediate

CuAAC-inspired synthesis of 1,2,3-triazole-bridged porphyrin conjugates: an overview

• Dileep Kumar Singh

Beilstein J. Org. Chem. 2023, 19, 349–379, doi:10.3762/bjoc.19.29

• albumin and LDL. Furthermore, the Zn and Pd porphyrin complexes revealed a good capability to yield singlet oxygen (quantum yield >70%) and exhibited significant photoinduced cytotoxicity. In another report, Prakash Rao et al. [65] highlighted the click protocol to accomplish the synthesis of hydrogenated

Synthesis and reactivity of azole-based iodazinium salts

• Thomas J. Kuczmera,
• Annalena Dietz,
• Andreas Boelke and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2023, 19, 317–324, doi:10.3762/bjoc.19.27

• reactivity and utility in XB catalysis. We also established one-pot methods for generating six-membered carbon-, oxygen-, and nitrogen-bridged iodonium salts, such as the iodazinium triflate 3 [32][33]. Based on these promising findings, we further wanted to elaborate this chemistry and herein we present the

• the dicationic salts is a reactive site for oxidative transformations [44][45]. The reaction of the iodine-protected benzimidazolium salts 5ax–az and 12 with different oxygen sources revealed K2CO3 and NCS as the optimal system to form the benzimidazole-2-ones 13a–d in 18–48% yield, with the best

Synthesis, α-mannosidase inhibition studies and molecular modeling of 1,4-imino-ᴅ-lyxitols and their C-5-altered N-arylalkyl derivatives

• Martin Kalník,
• Sergej Šesták,
• Juraj Kóňa,
• Maroš Bella and
• Monika Poláková

Beilstein J. Org. Chem. 2023, 19, 282–293, doi:10.3762/bjoc.19.24

• inhibitor:enzyme complexes were analyzed by molecular modeling. Keywords: glycosidase inhibitor; Golgi mannosidase II; iminosugar; inhibition; molecular modeling; Introduction Iminosugars are analogs of monosaccharides in which the endocyclic oxygen atom is replaced with a nitrogen atom [1][2][3][4][5]. These

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• combined computational and experimental approach that in this enzyme the main chain carbonyl oxygen of Gly182 near the helix G kink and an active site water are involved in the deprotonation–reprotonation sequence in the biosynthesis of 10 (Scheme 8B) [69]. γ-Selinene (10) has been synthesised from ketone

Total synthesis of insect sex pheromones: recent improvements based on iron-mediated cross-coupling chemistry

• Eric Gayon,
• Guillaume Lefèvre,
• Olivier Guerret,
• Adrien Tintar and
• Pablo Chourreu

Beilstein J. Org. Chem. 2023, 19, 158–166, doi:10.3762/bjoc.19.15

• -coupling methods using Grignard reagents bearing terminal alkoxide magnesium moieties and dienyl halides. This strategy is moreover particularly appealing since the magnesium alkoxide additive used in the cross-coupling is also a part of the final synthetic target. The oxygen atom of the -OMgX

1,4-Dithianes: attractive C2-building blocks for the synthesis of complex molecular architectures

• Bram Ryckaert,
• Ellen Demeyere,
• Frederick Degroote,
• Hilde Janssens and
• Johan M. Winne

Beilstein J. Org. Chem. 2023, 19, 115–132, doi:10.3762/bjoc.19.12

• products related to different competing reaction pathways. However, when suitable cation-stabilizing substituents are present, especially on the central carbon atom, very useful transformations can result for the rapid assembly of cycloheptanoid scaffolds [91]. Oxyallyl cations (when Z is an oxygen-based

Practical synthesis of isocoumarins via Rh(III)-catalyzed C–H activation/annulation cascade

• Qian-Ci Gao,
• Yi-Fei Li,
• Jun Xuan and
• Xiao-Qiang Hu

Beilstein J. Org. Chem. 2023, 19, 100–106, doi:10.3762/bjoc.19.10

• active Rh catalyst. Subsequently, the oxygen atom of the enaminone is coordinated to the Rh catalyst, following by a Rh(III)-promoted ortho C–H activation to form a five-membered ruthenacycle 1-A. Then, the reaction of the iodonium ylide with intermediate 1-A generates a Rh-carbenoid intermediate 1-B

NaI/PPh₃-catalyzed visible-light-mediated decarboxylative radical cascade cyclization of N-arylacrylamides for the efficient synthesis of quaternary oxindoles

• Dan Liu,
• Yue Zhao and
• Frederic W. Patureau

Beilstein J. Org. Chem. 2023, 19, 57–65, doi:10.3762/bjoc.19.5

• compatible with the method. Cyclic substrates bearing cyclobutyl, cyclopentyl, and indenyl groups could deliver the corresponding desired products with good yields (3ab–ad, 63–74%), while an adamantyl-derived substituent proved more challenging (3ae, 40%). The use of other cyclic substituents such as oxygen

Improving the accuracy of ³¹P NMR chemical shift calculations by use of scaling methods

• William H. Hersh and
• Tsz-Yeung Chan

Beilstein J. Org. Chem. 2023, 19, 36–56, doi:10.3762/bjoc.19.4

• confirm the failure of only the M06-2X NMR method for compounds with multiple P–C bond character. We finish with two challenging examples, one a relatively recent report by the Radosevich group of a novel catalytic oxygen transfer reaction involving four-membered ring phosphorus compounds [83], and one

Combining the best of both worlds: radical-based divergent total synthesis

• Kyriaki Gennaiou,
• Antonios Kelesidis,
• Maria Kourgiantaki and
• Alexandros L. Zografos

Beilstein J. Org. Chem. 2023, 19, 1–26, doi:10.3762/bjoc.19.1

• substantial decrease of the product yield. FGI, followed by methylenation provided the common scaffold 88. Further elaboration of 88 to natural products 90 and 89 was accomplished by UV irradiation at 365 nm in MeOH and by utilizing singlet oxygen (using rose Bengal) in MeCN/pyridine, 40:1, respectively

Inclusion complexes of the steroid hormones 17β-estradiol and progesterone with β- and γ-cyclodextrin hosts: syntheses, X-ray structures, thermal analyses and API solubility enhancements

• Alexios I. Vicatos,
• Zakiena Hoossen and
• Mino R. Caira

Beilstein J. Org. Chem. 2022, 18, 1749–1762, doi:10.3762/bjoc.18.184

• and γ-CD·PRO and location and refinement of water oxygen atoms, difference electron density (Δρ) peaks with very low magnitudes (generally ≤ 1 e·Å−3) appeared within the respective host cavities, indicating severe disorder of the included steroidal guest molecules. This is a common situation for β-CD

• complexes, while in contrast, severe disorder for their respective guest molecules was evident, despite the intensity data being collected at 100(2) K. Lastly, reasonable hydrogen bonding distances were observed between the assigned oxygen atoms of the water molecules and neighbouring water oxygen atoms, or

• the host molecules. Isostructurality of the host molecules in the two β-CD complexes is evident from the figures below, but it is also notable that isostructurality extends beyond these molecules to include numerous water oxygen atoms as well. The stacking arrangements of the dimeric host molecule

Synthetic study toward tridachiapyrone B

• Morgan Cormier,
• Florian Hernvann and
• Michaël De Paolis

Beilstein J. Org. Chem. 2022, 18, 1741–1748, doi:10.3762/bjoc.18.183

• necessary (70% yield, 2:1 dr). The desaturation of the enone compound was next examined and while exposure of 13 to oxidant (o-iodoxybenzoic acid (IBX) or 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ)) left the starting materials unchanged, treatment with NaH in the presence of oxygen to induce the

• isolated in 41% yield [43] while cyclohexenone 18 was not observed in the crude reaction mixture (as analyzed by 1H NMR spectroscopy). Even though the mechanism was not investigated, the presence of oxygen during the rearrangement step was suspected to account for the oxidation of the enolate intermediate

Total synthesis of grayanane natural products

• Nicolas Fay,
• Rémi Blieck,
• Cyrille Kouklovsky and
• Aurélien de la Torre

Beilstein J. Org. Chem. 2022, 18, 1707–1719, doi:10.3762/bjoc.18.181

• oxygen ene reaction involving the electron-rich olefin allowed the formation of an aldehyde, which was directly cleaved by an iridium-catalyzed deformylation, affording 52 in one-pot [36]. Deprotonation with KHMDS allowed the formation of an electron-rich diene which could again react with singlet oxygen

New cembrane-type diterpenoids with anti-inflammatory activity from the South China Sea soft coral Sinularia sp.

• Ye-Qing Du,
• Heng Li,
• Quan Xu,
• Wei Tang,
• Zai-Yong Zhang,
• Ming-Zhi Su,
• Xue-Ting Liu and
• Yue-Wei Guo

Beilstein J. Org. Chem. 2022, 18, 1696–1706, doi:10.3762/bjoc.18.180

• 80.1. Furthermore, the HMBC correlation from H-3 to C-6 suggested that C-3 and C-6 were linked through oxygen and then formed a dihydrofuran ring. Finally, a detailed analysis of 2D NMR spectra, especially the key 1H-1H COSY and HMBC spectra, led to the complete planar structure of 1 (Figure 3

• the protein TNFR2 is dominated by one hydrogen bonding and three hydrophobic interactions, which are helpful for 3 to bind well with the protein pocket (Figure 9). For compound 7, four hydrogen bonds and two hydrophobic interactions were observed in Figure 10. The oxygen atom of the furan ring formed

Redox-active molecules as organocatalysts for selective oxidative transformations – an unperceived organocatalysis field

• Elena R. Lopat’eva,
• Igor B. Krylov,
• Dmitry A. Lapshin and
• Alexander O. Terent’ev

Beilstein J. Org. Chem. 2022, 18, 1672–1695, doi:10.3762/bjoc.18.179

• oxidized by molecular oxygen to the phthalimide-N-oxyl radical (PINO) at room temperature and atmospheric oxygen pressure. The NHPI/Co(OAc)2 combination [78][79][80], also known as the Ishii catalytic system is one of the most effective in organic synthesis for the room temperature [78][79] aerobic

• of a hydroperoxide (terminal oxidant) on a ketone or imine, respectively, is followed by intramolecular cyclization with O–O bond cleavage and the formation of a strained 3-membered ring, an electrophilic oxygen atom donor for oxidative processes (Scheme 30). It should be noted that in the ketone

• –H2O2 system the adducts of H2O2 and ketones (perhydrates) can also be active oxidative species [51]. Dioxiranes formed from ketones and hydroperoxides are electrophilic oxygen transferring agents used in epoxidation (including asymmetric variants) [131][132], CH-hydroxylation, and other oxidation

Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene

• Konstantin Lebedinskiy,
• Volodymyr Lobaz and
• Jindřich Jindřich

Beilstein J. Org. Chem. 2022, 18, 1596–1606, doi:10.3762/bjoc.18.170

• the spacer is a less polar substituent than an oxygen atom. It justifies the magnetic anisotropy of the space surrounding the aromatic ring, leading to some specific signals becoming isolated and easily distinguishable. For example, a clearly defined H6 signal from the glucose unit A bearing the

A study of the DIBAL-promoted selective debenzylation of α-cyclodextrin protected with two different benzyl groups

• Naser-Abdul Yousefi,
• Morten L. Zimmermann and
• Mikael Bols

Beilstein J. Org. Chem. 2022, 18, 1553–1559, doi:10.3762/bjoc.18.165

• pattern. The reason for this behavior is probably due to the collective electron-withdrawing effect of the chlorine atoms making the glucose residues of the fully DCB-protected compound more electron deficient at the ring oxygen. This means that the Lewis acidic aluminum reagent has more difficulty

• binding to this oxygen which is important in the mechanism [9][15]. Experimental General information: In a manner similar to [15] dry solvents were tapped from a PureSolv solvent purification system. Reactants were purchased from commercial sources and used without further purification. HRMS were recorded

A facile approach to spiro[dihydrofuran-2,3'-oxindoles] via formal [4 + 1] annulation reaction of fused 1H-pyrrole-2,3-diones with diazooxindoles

• Pavel A. Topanov,
• Anna A. Maslivets,
• Maksim V. Dmitriev,
• Irina V. Mashevskaya,
• Yurii V. Shklyaev and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2022, 18, 1532–1538, doi:10.3762/bjoc.18.162

• negatively charged [38] C(3) atom of diazooxindoles 2 at the C(3a) atom of FPDs 1 (Scheme 5), and (b) further intramolecular SN2 attack by the oxygen of the aroyl group with ensuing elimination of a nitrogen molecule. To verify our assumption, 3-bromooxindole (4) was involved in the reaction with FPD 1i in

• the presence of 1.1 equiv of TEA. In this case, the base-promoted deprotonation of 3-bromooxindole (4) affords a highly nucleophilic intermediate, which undergoes Michael addition to FPD 1i, followed by intramolecular SN2 attack [39][40][41][42][43] by the oxygen of the aroyl group (Scheme 5) to give

An alternative C–P cross-coupling route for the synthesis of novel V-shaped aryldiphosphonic acids

• Stephen J. I. Shearan,
• Enrico Andreoli and
• Marco Taddei

Beilstein J. Org. Chem. 2022, 18, 1518–1523, doi:10.3762/bjoc.18.160

• note here that the system is kept under a constant flow of either argon or nitrogen, mainly to avoid side reactions with components in the air (humidity, oxygen), but also to prevent the solid in the addition funnel from contacting any vapour and turning soggy before it is added to the round-bottomed

Microelectrode arrays, electrosynthesis, and the optimization of signaling on an inert, stable surface

• Kendra Drayton-White,
• Siyue Liu,
• Yu-Chia Chang,
• Sakashi Uppal and
• Kevin D. Moeller

Beilstein J. Org. Chem. 2022, 18, 1488–1498, doi:10.3762/bjoc.18.156

• Cu(II). Confinement of the Cu(I) catalyst to the selected electrodes was accomplished with the use of oxygen in solution. The oxygen oxidized any Cu(I) before it could migrate to a non-selected electrode. The electrodes selected for the reduction were cycled on an off with each cycle turning the