Hypervalent iodine-mediated cyclization of bishomoallylamides to prolinols

• Smaher E. Butt,
• Konrad Kepski,
• Jean-Marc Sotiropoulos and
• Wesley J. Moran

Beilstein J. Org. Chem. 2024, 20, 2455–2460, doi:10.3762/bjoc.20.209

• outcome led to variable yields of product in the range of 10–25%. Increasing the quantity of 2-iodoanisole to 150 mol % provided a reproducible 30% yield of 7a (Table 1, entry 1). We then varied the iodoarene to see the impact on the reaction outcome. Using iodobenzene, 2-iodobiphenyl, and 3-iodotoluene

• provided slight improvements in yield (Table 1, entries 2–4). The more electron-rich 2-iodo-1,3-dimethoxybenzene led to a further increase in yield to 44% (Table 1, entry 5). 1,2-Diiodobenzene has been reported to be a superior precatalyst in intermolecular C–H aminations of arenes but only provided 40

• % yield in the present case [22]. 1-Iodonaphthalene led to an increase in yield to 49% (Table 1, entry 7). 1-Iodo-2,4-dimethoxybenzene afforded the highest yield of all with 59% of tertiary amide being isolated (Table 1, entry 8). Leaving the reaction to stir for an extended period led to a further

Facile preparation of fluorine-containing 2,3-epoxypropanoates and their epoxy ring-opening reactions with various nucleophiles

• Yutaro Miyashita,
• Sae Someya,
• Tomoko Kawasaki-Takasuka,
• Tomohiro Agou and
• Takashi Yamazaki

Beilstein J. Org. Chem. 2024, 20, 2421–2433, doi:10.3762/bjoc.20.206

• high stereoselectivity were similarly recorded for the other substrates 2c and 2d possessing different Rf groups at the 3 position (Table 2, entries 1–3). Mixing of 2b with different primary (entries 4–7 in Table 2) and secondary (entries 8 and 9) amines led to the formation of the respective products

• amines and thiols were obtained by using the corresponding MgX2 [23][24]. It was proved that a larger amount of nucleophiles, higher temperature, and longer time all led to a decrease in the diastereomeric ratio of the products 5 (ca 10%) like the case of thiols described above. This is the reason why

• during the lactone-forming process. Their close structural resemblance led to a significant peak overlap both in the 1H and 19F NMR spectra which made it difficult to obtain their exact ratio and thus, the combined 19F NMR yields were shown in Table 4. Separation of these two compounds was eventually

Homogeneous continuous flow nitration of O-methylisouronium sulfate and its optimization by kinetic modeling

• Jiapeng Guo,
• Weike Su and
• An Su

Beilstein J. Org. Chem. 2024, 20, 2408–2420, doi:10.3762/bjoc.20.205

• temperature exceeds the highest temperature used during the initial development of the kinetic model, which was 40 °C. This further extrapolation led to a 10% error at a residence time of 13.7 min, inferring that it would be prudent to avoid increasing the temperature to 45 °C if the aim is to maintain the

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• proteomic samples led to development of numerous enrichment strategies using a variety of linkers as outlined below. The enrichment of the probe–protein or probe–peptide conjugates reduces the number of total peptides to be resolved by LC–MS/MS. The most common strategy to identify proteins interacting with

• a probe either directly in living cells or in cell lysates utilizes a linker with biotin (Figure 8A). This approach led for example to the identification of protein targets of the synthetic pyrethrin analogues cerulenin, hypothemicin, fimbrolide, and eupalmerin acetate [89][90][91][92]. The biotin

• desthiobiotin moiety and isotopically labeled residues for direct quantification (Figure 9A) [103]. Thus far, the linker has been mainly utilized for profiling of reactive cysteines. For this review the labile and open search of the data acquired by Zanon et al. using the FragPipe suite led to identification of

Stereoselective mechanochemical synthesis of thiomalonate Michael adducts via iminium catalysis by chiral primary amines

• Michał Błauciak,
• Dominika Andrzejczyk,
• Błażej Dziuk and
• Rafał Kowalczyk

Beilstein J. Org. Chem. 2024, 20, 2313–2322, doi:10.3762/bjoc.20.198

• nucleophilic catalyst. Test reactions between cyclohexenone and thiomalonate 1 conducted in toluene at room temperature indicated the formation of the product with high conversions and efficiencies (Scheme 2). Application of epi-aminoquinine (AQ-1) in combination with 2-fluorobenzoic acid (system A) led to the

• supported moreover by the local pressure increase. Albeit the transformation performed in the planetary ball mill required 20 h to proceed, the same reaction in the mixer mill offering the greater energy impact by the rise of mixing frequency led to the product after 1 hour with an acceptable yield of

• observed when AQ-3 was applied. Besides, the modifications of the quinuclidine ring through replacing the vinyl substituent in the parent quinine core by a triple bond (AQ-5) led to no substantial improvement in the mixer mill, but the decrease of enantioselectivity in the reaction performed in the

Catalysing (organo-)catalysis: Trends in the application of machine learning to enantioselective organocatalysis

• Stefan P. Schmid,
• Leon Schlosser,
• Frank Glorius and
• Kjell Jorner

Beilstein J. Org. Chem. 2024, 20, 2280–2304, doi:10.3762/bjoc.20.196

• catalysts [3]. In particular, enantioselective organocatalysis has shown an impressive rise in the last decades, owing to the tunability of catalysts and different modes of activation, enabling a manifold of different transformations [4][5]. The development of the field, driven by many researchers, led to

• relationships such as those using Hammett parameters used linear models, the emergence of ML has led to the development of more complex algorithms, better suited for extracting hidden patterns in data. The ability of ML to efficiently capture complex relationships allows to extract influences on catalyst

• , the interest to describe the influence of substrate or catalyst structures on the rate or selectivity of a reaction is well-established and led among others to the introduction of Hammett parameters to relate chemical structures to both kinetic and thermodynamic reaction properties [28] (Figure 4). As

Deuterated reagents in multicomponent reactions to afford deuterium-labeled products

• Kevin Schofield,
• Shayna Maddern,
• Yueteng Zhang,
• Grace E. Mastin,
• Rachel Knight,
• Wei Wang,
• James Galligan and
• Christopher Hulme

Beilstein J. Org. Chem. 2024, 20, 2270–2279, doi:10.3762/bjoc.20.195

• a >95% deuterated aldehyde gave a >95% deuterated product. The low yield in 2c is likely due to the difficult preparation of aliphatic deuterated aldehydes which led us to believe that the starting material was partially decomposed. Nonetheless, both aliphatic and aromatic deuterated aldehydes have

gem-Difluorination of carbon–carbon triple bonds using Brønsted acid/Bu₄NBF₄ or electrogenerated acid

• Mizuki Yamaguchi,
• Hiroki Shimao,
• Kengo Hamasaki,
• Keiji Nishiwaki,
• Shigenori Kashimura and
• Kouichi Matsumoto

Beilstein J. Org. Chem. 2024, 20, 2261–2269, doi:10.3762/bjoc.20.194

• the case of an aliphatic terminal alkyne, such as dec-1-yne (1d), the 19F NMR study indicated 46% yield with method A (Table 2, entry 5), but it was difficult to purify and isolate product 2d because of the low molecular weight. Scale up conditions of method A, for the purpose of the isolation, led to

Heterocycle-guided synthesis of m-hetarylanilines via three-component benzannulation

• Andrey R. Galeev,
• Maksim V. Dmitriev,
• Alexander S. Novikov and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2024, 20, 2208–2216, doi:10.3762/bjoc.20.188

• key fragment [17][18][19][20][21][22][23][24][25][26]. The aforementioned features have led to an extensive development of novel methods to access meta-substituted anilines which can be divided into two main strategies (Scheme 1A) [27]. The first strategy focuses on the decoration of the aromatic ring

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

Factors influencing the performance of organocatalysts immobilised on solid supports: A review

• Zsuzsanna Fehér,
• Dóra Richter,
• Gyula Dargó and
• József Kupai

Beilstein J. Org. Chem. 2024, 20, 2129–2142, doi:10.3762/bjoc.20.183

• ) photo-polymerisation reactions (Scheme 6) [24]. Previous endeavours utilising the homogeneous catalyst led to catalyst degradation or failure to remove the catalyst properly which resulted in the degradation of the polymer itself [66]. By employing the supported photocatalyst, reduced contamination was

• % increase in yields, however, further increase in pressure proved to be non-beneficial. Moreover, increasing the temperature provided higher yields at optimised pressure (60 bar) but also led to lowered enantioselectivity (Scheme 7) [121]. Zhang and co-workers prepared a novel polymer with an ordered

Efficacy of radical reactions of isocyanides with heteroatom radicals in organic synthesis

• Akiya Ogawa and
• Yuki Yamamoto

Beilstein J. Org. Chem. 2024, 20, 2114–2128, doi:10.3762/bjoc.20.182

• imine 6’ (96%), which underwent [2 + 2] cycloaddition with methoxyketene to afford β-lactam derivative 7 (79%) (Scheme 4). Selective replacement of the PhSe group of 7 with a 3-butanonyl group (34%) and the subsequent intramolecular Horner–Emmons reaction successfully led to carbacephem skeleton 8 (96

• quinoxaline synthesis was reported to proceed by irradiation with visible light in the presence of dibenzylamine ((PhCH2)2NH, MeCN, rt, blue LED) [64]. This reaction involves a visible-light-induced single electron transfer (SET) process. An efficient radical cascade cyclization has also been reported, in

From perfluoroalkyl aryl sulfoxides to ortho thioethers

• Yang Li,
• Guillaume Dagousset,
• Emmanuel Magnier and
• Bruce Pégot

Beilstein J. Org. Chem. 2024, 20, 2108–2113, doi:10.3762/bjoc.20.181

• difunctionalization led to lower yields (2e,f). The product of rearrangement 2a was oxidized into the sulfoxide and re-engaged under the optimized conditions to afford the compound of bis-rearrangement 2g in a good yield of 49%. This compound is then the result of an iterative rearrangement. Difluorinated sulfoxides

Computational toolbox for the analysis of protein–glycan interactions

• Ferran Nieto-Fabregat,
• Maria Pia Lenza,
• Angela Marseglia,
• Cristina Di Carluccio,
• Antonio Molinaro,
• Alba Silipo and
• Roberta Marchetti

Beilstein J. Org. Chem. 2024, 20, 2084–2107, doi:10.3762/bjoc.20.180

• simplify the transmission and efficiency of the communication within the scientific community. This led to the extensive use of the symbol nomenclature for glycans (SNFG) representation that is used in all the tools described below (Figure 3) [11][45]. Numerous computer applications have been developed to

Cage-like microstructures via sequential Ugi reactions in aqueous emulsions

• Rita S. Alqubelat,
• Yaroslava A. Menzorova and
• Maxim A. Mironov

Beilstein J. Org. Chem. 2024, 20, 2078–2083, doi:10.3762/bjoc.20.179

• in dilute aqueous solutions [17]. The use of this method led to the formation of particles with an average diameter in the range of 200–350 nm and with a domain structure. Domains of about 40 nm in size, consisting of CMC, were connected to each other by a soft material based on chitosan. Such

• . Titration of CMC with hydrochloric acid, followed by treatment with a mixture of hexamethylene diisocyanide and formalin led to the formation of compact particles with an average diameter of 40–80 nm (Figure 3A). These particles were the main building blocks for the construction of cage-like structures

• increase in the cross-linking density to 20 mol % at the first stage led to the formation of a denser packing of particles at the second stage of the process (Figure 4B). Supposedly, this was due to the large steric repulsion between the particles, which prevented the formation of chains on the surface of

Multicomponent syntheses of pyrazoles via (3 + 2)-cyclocondensation and (3 + 2)-cycloaddition key steps

• Ignaz Betcke,
• Alissa C. Götzinger,
• Maryna M. Kornet and
• Thomas J. J. Müller

Beilstein J. Org. Chem. 2024, 20, 2024–2077, doi:10.3762/bjoc.20.178

• -phenyl-2,4-hexanedione was generated in situ through acid hydrolysis of 1,1,1-trichloro-4-methoxy-6-phenyl-3-hexen-2-ones 71. Subsequent cyclization with hydrazine hydrochloride followed by hydrolysis of the trichloromethyl group led to 73. This intermediate was then reacted with 2,2,2-trifluoroethanol

Diastereoselective synthesis of highly substituted cyclohexanones and tetrahydrochromene-4-ones via conjugate addition of curcumins to arylidenemalonates

• Deepa Nair,
• Abhishek Tiwari,
• Banamali Laha and
• Irishi N. N. Namboothiri

Beilstein J. Org. Chem. 2024, 20, 2016–2023, doi:10.3762/bjoc.20.177

• ). In the next set of experiments, different curcumins were examined while keeping 2a as the model arylidenemalonate (Table 2, entries 9–11). The reaction of p-tolyl and p-bromophenyl analogs of curcumin 1b,c led to the formation of double Michael adducts 3i–j in moderate yields (35–43%) over prolonged

Understanding X-ray-induced isomerisation in photoswitchable surfactant assemblies

• Beatrice E. Jones,
• Camille Blayo,
• Jake L. Greenfield,
• Matthew J. Fuchter,
• Nathan Cowieson and
• Rachel C. Evans

Beilstein J. Org. Chem. 2024, 20, 2005–2015, doi:10.3762/bjoc.20.176

• hydrophilicity [6]. This, in turn, affects the interfacial and self-assembly properties of the PS [4][5][6]. The uniquely tuneable properties of these photoswitchable molecules have led to their successful application in areas such as DNA compaction [8], photorheological fluids [9][10] and micellar catalysis [11

• replaced by a pyrazole, which improves several aspects of their performance, including quantitative photoswitching between isomers and significantly enhanced thermal stability of the Z isomer [13][14][15]. This has led to recent reports on the integration of AAPs into surfactants to form systems with

• (10 and 90 wt %), and the samples were heated to 60 °C, whilst stirring until homogenous. Samples were left to cool to room temperature whilst stirring. For the photoisomerisation studies using UV–vis absorbance spectroscopy, samples were irradiated to the PSS in a custom-built LED light box with UV

Harnessing the versatility of hydrazones through electrosynthetic oxidative transformations

• Aurélie Claraz

Beilstein J. Org. Chem. 2024, 20, 1988–2004, doi:10.3762/bjoc.20.175

• formation of dimeric side products. Cyclic voltammetry analysis suggested an initial anodic single electron transfer (SET) to radical cation 5, cyclization and deprotonation. Subsequent SET oxidation in solution by 5 led to cation 7. Final deprotonation furnished aromatic cycle 4. In 2022, Zhang et al

• the electrolysis was a four-electron oxidative process. Based on this study, the authors proposed the initial anodic oxidation of hydrazone 44 through the loss of two electrons and one proton to form cation 47. Subsequent nucleophilic addition of the azaarene led to new highly acidic cationic species

• generation of electrophilic thiocyanogen as the initial step. Further reaction with the hydrazone 95 and deprotonation led to hydrazonoyl thiocyanate intermediate 99, which isomerized to the thermodynamically more stable isothiocyanate derivatives 100 through 1,3-shift. The latter underwent spontaneous ring

Allostreptopyrroles A–E, β-alkylpyrrole derivatives from an actinomycete Allostreptomyces sp. RD068384

• Marwa Elsbaey,
• Naoya Oku,
• Mohamed S. A. Abdel-Mottaleb and
• Yasuhiro Igarashi

Beilstein J. Org. Chem. 2024, 20, 1981–1987, doi:10.3762/bjoc.20.174

• Allostreptomyces sp. RD068384, including a new congener, allostreptamide [24]. Further investigation of this strain led to the isolation of five new β-alkylpyrroles, designated allostreptopyrroles A–E (1–5) (Figure 1). Results and Discussion The fermentation extract of strain RD068384, cultured in A-3M medium, was

Development of a flow photochemical process for a π-Lewis acidic metal-catalyzed cyclization/radical addition sequence: in situ-generated 2-benzopyrylium as photoredox catalyst and reactive intermediate

• Masahiro Terada,
• Zen Iwasaki,
• Ryohei Yazaki,
• Shigenobu Umemiya and
• Jun Kikuchi

Beilstein J. Org. Chem. 2024, 20, 1973–1980, doi:10.3762/bjoc.20.173

• 2a, and 0.5 mmol (5 equiv) of TFA under light irradiation (blue LED: λmax = 448 nm) at 50 °C for 1 h in 1 mL (total volume) of 1,2-DCE] [55] with a flow rate of 3 mL/h (light irradiation time: 20 min in the flow reaction, 1 h in the batch reaction). As shown in Table 1, product 3a was obtained in

• result, extending the premixing time and the light irradiation time (Table 2, entry 2) led to an improved yield; the obtained yield was higher than that of the batch reaction system even when half the amount of AgNTf2 was used with the temperature reduced to 25 °C (flow: 54% vs batch: 48%). Meanwhile

1,2-Difluoroethylene (HFO-1132): synthesis and chemistry

• Liubov V. Sokolenko,
• Taras M. Sokolenko and
• Yurii L. Yagupolskii

Beilstein J. Org. Chem. 2024, 20, 1955–1966, doi:10.3762/bjoc.20.171

• HCFCs, along with new refrigeration systems in the 1930s–1960s, has led to the wide application of these materials in household and commercial refrigeration systems [1][2]. In addition, CFCs have found applications as propellants, foam-blowing agents, cleaning solvents, etc. Although these groups of

• fluorinated materials are non-flammable and have low toxicity, CFCs were found to be destructive to the ozone layer of the stratosphere [1][2] due to high ozone-depleting potential (ODP). This has led to the phasing out of CFCs and the replacement with hydrofluorocarbons (HFCs), which show no significant

• cis-isomer decreases, i.e., the cis-isomer of 1,2-difluoroethylene is thermodynamically favored [47]. Deuteration The stereospecific reaction of (E/Z)-1,2-difluoroethylene with a 1–2 M solution of NaOD in D2O (90–120 °C, 2 d) led to the formation of CDF=CDF with high isotopic purity (Scheme 8) [76][77

Regioselective alkylation of a versatile indazole: Electrophile scope and mechanistic insights from density functional theory calculations

• Pengcheng Lu,
• Luis Juarez,
• Paul A. Wiget,
• Weihe Zhang,
• Krishnan Raman and
• Pravin L. Kotian

Beilstein J. Org. Chem. 2024, 20, 1940–1954, doi:10.3762/bjoc.20.170

• the N1-product with highly similar energy (averaging −16.8 kcal/mol). The N2-s-cis and N2-s-trans TSs leading to the N2-product were higher in energy and led to the higher energy N2 products. The critical difference between N1-s-cis and N2-s-cis is the presence of the N2–Cs+–O non-covalent interaction

• for TSs that led to both the N1- and N2-products but lacked any dative preorganization. However, under these reaction conditions, we found that the TS leading to the N2-product, N2-s-cis, was lower in energy than its N1-analog, N1-s-trans, by 1.1 kcal/mol (see Figure 8). This energy difference appears

A new platform for the synthesis of diketopyrrolopyrrole derivatives via nucleophilic aromatic substitution reactions

• Vitor A. S. Almodovar and
• Augusto C. Tomé

Beilstein J. Org. Chem. 2024, 20, 1933–1939, doi:10.3762/bjoc.20.169

• . Furthermore, the reaction with 4-(acetylamino)benzenethiol led to the selective formation of the disubstituted compound 3c in 53% yield. Phenols are less nucleophilic than thiols and, depending on the substitution pattern, a stronger base is often required to generate the corresponding alkoxide, which is the

• contrast to the reaction with pyridine-4-thiol, which resulted in the S-substituted product 3a, the reaction with 4-hydroxypyridine led exclusively to the formation of the pyridin-4-one-derived compounds 3f and 4f, in 45% and 13% yield, respectively. The substitution occurred at the nitrogen atom rather

Negishi-coupling-enabled synthesis of α-heteroaryl-α-amino acid building blocks for DNA-encoded chemical library applications

• Matteo Gasparetto,
• Balázs Fődi and
• Gellért Sipos

Beilstein J. Org. Chem. 2024, 20, 1922–1932, doi:10.3762/bjoc.20.168

• conditions in hand, we proceeded with the investigation of the heteroaryl halide scope in batch (Scheme 3). Thiazoles proved to be challenging substrates typically affording the desired products in moderate yields (2b–h). While 2-chlorothiazole led to the production of 2b in 44% yield, 2-bromo-5

• protection of the aromatic NH group (2s vs 2t; 2v vs 2u). Reactions with unprotected imidazoles 1s and 1v led to immediate formation of a precipitate upon addition of the Reformatsky reagent. Surprisingly, 1z did not afford the expected product (2z). The synthesis of the Reformatsky reagent can be combined