Regioselective quinazoline C2 modifications through the azide–tetrazole tautomeric equilibrium

• Dāgs Dāvis Līpiņš,
• Andris Jeminejs,
• Una Ušacka,
• Anatoly Mishnev,
• Māris Turks and
• Irina Novosjolova

Beilstein J. Org. Chem. 2024, 20, 675–683, doi:10.3762/bjoc.20.61

• of 4-azido-6,7-dimethoxy-2-sulfonylquinazoline derivatives 12 were proven by chemical synthesis of the regioisomers 15 (Scheme 7) and X-ray analysis of 12a (Scheme 6). 6,7-Dimethoxy-2,4-diazidoquinazoline (13) was synthesized from commercially available dichloroquinazoline 7 in 93% yield. Further

Synthesis of photo- and ionochromic N-acylated 2-(aminomethylene)benzo[b]thiophene-3(2Н)-ones with a terminal phenanthroline group

• Vladimir P. Rybalkin,
• Sofiya Yu. Zmeeva,
• Lidiya L. Popova,
• Irina V. Dubonosova,
• Olga Yu. Karlutova,
• Oleg P. Demidov,
• Alexander D. Dubonosov and
• Vladimir A. Bren

Beilstein J. Org. Chem. 2024, 20, 552–560, doi:10.3762/bjoc.20.47

• Information File 28: X-ray analysis data of 3b. Funding This study was financially supported by the Ministry of Science and Higher Education of the Russian Federation in the scope of the State Task in the Field of Science (No. FENW_2023-0020) and in the scope of the State Task to the Southern Scientific

Enhanced host–guest interaction between [10]cycloparaphenylene ([10]CPP) and [5]CPP by cationic charges

• Eiichi Kayahara,
• Yoshiyuki Mizuhata and
• Shigeru Yamago

Beilstein J. Org. Chem. 2024, 20, 436–444, doi:10.3762/bjoc.20.38

• observations also agree well with the change in oxidation and reduction potentials upon complex formation observed in the electrochemical analysis. The double-layered structure of the complex was unambiguously determined by single-crystal X-ray analysis (Figure 7), which was performed on a crystal obtained by

Spatial arrangements of cyclodextrin host–guest complexes in solution studied by ¹³C NMR and molecular modelling

• Konstantin Lebedinskiy,
• Ivan Barvík,
• Zdeněk Tošner,
• Ivana Císařová,
• Jindřich Jindřich and
• Radim Hrdina

Beilstein J. Org. Chem. 2024, 20, 331–335, doi:10.3762/bjoc.20.33

• modelling and solid-state X-ray analysis, provides a detailed description of the spatial arrangement of cyclodextrin host–guest complexes in solution. The chiral cavity of the cyclodextrin molecule creates an anisotropic environment for the guest molecule resulting in a splitting of its prochiral carbon

• -cyclodextrins. Compounds 1, 6 and 8 are commercial, compounds 2–5 [21] and 7 [22] were prepared according to published procedures. Compound 2 (as a free amine) crystallized in the supramolecular capsule of two α-cyclodextrins, and the mono-crystal was subjected to X-ray analysis. This experiment was performed

• . The 3D densities show the spatial distribution of prochiral atoms within MD simulations. Studied host–guest complexes and splitting of guests’ prochiral carbons in their 13C NMR spectra. Molecular modelling of the host–guest complexes of compound 4 with α-CD, β-CD and γ-CD. X-ray analysis of the α-CD

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• of indigo in 1) DMSO, 2) DMF, 3) N-methyl-2-pyrrolidone. Bond length in the indigo molecule obtained from the single crystal X-ray analysis [12], the typical bond lengths in organic compounds [15] and the main resonance structures of indigo. The structure of the indigo chromophore (H-chromophore

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• NMR (282 MHz, acetone-d6, δ, ppm) −77.1; HRESIMS (m/z): [M + Na]+ calcd for C22H24Cl2F3NNaO10S, 644.0342; found, 644.0349 . For the details of the single crystal X-ray analysis data for compound 7 (CCDC 1843708) see Supporting Information File 1 and Supporting Information File 2. Typical glycosylation

• sialylation reaction. TFA = CF3CO; ClAc = ClCH2CO. Synthesis of sialyl donor 2. SR values and types of supramers in solutions of sialyl donors 1 and 2 at different concentrations. Supporting Information Supporting Information File 3: Copies of NMR spectra for all new compounds, single crystal X-ray analysis

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• modular synthesis of stable phosphonium phenolate zwitterions bearing additional functional groups. The bonding situation in the zwitterions was studied by NMR and UV–vis spectroscopies and single-crystal X-ray analysis of selected representatives. The zwitterions exhibit negative solvatochromism and

Biphenylene-containing polycyclic conjugated compounds

• Cagatay Dengiz

Beilstein J. Org. Chem. 2023, 19, 1895–1911, doi:10.3762/bjoc.19.141

• and iPrOH, resulting in the formation of compound 37 in 49% yield. In the final step, Ir-catalyzed cycloaddition reaction with diphenylacetylene (tolane) led to PAH 38 in 47% yield. According to the X-ray analysis results, it is evident that the structure of compound 38 is far from planarity, and the

Synthesis of 7-azabicyclo[4.3.1]decane ring systems from tricarbonyl(tropone)iron via intramolecular Heck reactions

• Aaron H. Shoemaker,
• Elizabeth A. Foker,
• Elena P. Uttaro,
• Sarah K. Beitel and
• Daniel R. Griffith

Beilstein J. Org. Chem. 2023, 19, 1615–1619, doi:10.3762/bjoc.19.118

• best among those screened, yields remained modest (44%). X-ray analysis provided confirmation of the structure of bicycle 8 (CCDC No. 2263675). While searching for methods to improve the yield of our desired azabicycle, we came across the observation of Andrade and Kokkonda that vinylic halides with

• (Colby College) and Prof. Bruce Foxman (Brandeis University) for X-ray analysis of compound 8. High-resolution mass spectra were obtained at the Mass Spectrometry Lab at the University of Illinois. Funding We thank the donors of the American Chemical Society Petroleum Research Fund (Grant No. 59202-UNI1

Cyclization of 1-aryl-4,4,4-trichlorobut-2-en-1-ones into 3-trichloromethylindan-1-ones in triflic acid

• Vladislav A. Sokolov,
• Andrei A. Golushko,
• Irina A. Boyarskaya and
• Aleksander V. Vasilyev

Beilstein J. Org. Chem. 2023, 19, 1460–1470, doi:10.3762/bjoc.19.105

• , exact structures of compounds 1g,h,s,t,v were confirmed by X-ray analysis (see Supporting Information File 1). The hydroxy ketones 1 were used as precursors for the synthesis of 1-aryl-4,4,4-trichlorobut-2-en-1-ones (CCl3-enones) 2 by dehydration of compounds 1 with p-toluenesulfonic acid monohydrate at

• by X-ray analysis (see Supporting Information File 1). Both, hydroxy ketone 1 and the corresponding enone 2, can be converted into the same indanone 3 in comparable yields; see pairs of reactions for 1a and 2a (indanone 3a), 1d and 2d (indanone 3d), 1i and 3i (indanone 3i), and 1n and 3n (indanone 3n

Application of N-heterocyclic carbene–Cu(I) complexes as catalysts in organic synthesis: a review

• Nosheen Beig,
• Varsha Goyal and
• Raj K. Bansal

Beilstein J. Org. Chem. 2023, 19, 1408–1442, doi:10.3762/bjoc.19.102

• , Cazin and co-workers reported the synthesis of Cu(I) complexes 61, 63, and 65 of the so-called ‘abnormal’ NHCs (Scheme 21) [35]. Thus, the conventional heating method as well as microwave irradiation methods were employed. The structures of the synthesized complexes were confirmed by X-ray analysis

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

CO₂ complexation with cyclodextrins

• Cecilie Høgfeldt Jessen,
• Jesper Bendix,
• Theis Brock Nannestad,
• Heloisa Bordallo,
• Martin Jæger Pedersen,
• Christian Marcus Pedersen and
• Mikael Bols

Beilstein J. Org. Chem. 2023, 19, 1021–1027, doi:10.3762/bjoc.19.78

• , placed in an autoclave and pressurized with CO2 gas (pressure 6–20 bar) at 25 °C for 1–17 days. The resulting crystals were collected and filtered by suction filtration. The crystals were left to dry in a desiccator at normal pressure over CaCl2. X-ray analysis. The x-ray crystallographic studies were

Synthesis of tetrahydrofuro[3,2-c]pyridines via Pictet–Spengler reaction

• Elena Y. Mendogralo and
• Maxim G. Uchuskin

Beilstein J. Org. Chem. 2023, 19, 991–997, doi:10.3762/bjoc.19.74

• : Crystallographic information file for compound 4a. Acknowledgements The authors are grateful to Dr. Maksim V. Dmitriev (Perm State University) for performing the X-ray analysis. Funding We thank the Russian Science Foundation (grant 21-73-10063) for support of this work.

First synthesis of acylated nitrocyclopropanes

• Kento Iwai,
• Rikiya Kamidate,
• Khimiya Wada,
• Haruyasu Asahara and
• Nagatoshi Nishiwaki

Beilstein J. Org. Chem. 2023, 19, 892–900, doi:10.3762/bjoc.19.67

• other adducts 4. Supporting Information Supporting Information File 80: Spectral data for 1, 4, 8, 10, 13 and NMR charts (1H and 13C NMR), and information of X-ray analysis for 10. Supporting Information File 81: Crystallographic information file for compound 10. Supporting Information File 82

Bromination of endo-7-norbornene derivatives revisited: failure of a computational NMR method in elucidating the configuration of an organic structure

• Demet Demirci Gültekin,
• Arif Daştan,
• Yavuz Taşkesenligil,
• Cavit Kazaz,
• Yunus Zorlu and
• Metin Balci

Beilstein J. Org. Chem. 2023, 19, 764–770, doi:10.3762/bjoc.19.56

• irrefutably by X-ray crystallography, which would provide the ultimate structural confirmation. Toward that end, we resynthesized the molecule 6, isolated a sample and subjected it to single crystal X-ray analysis, which provided the ultimate final piece of evidence (Figure 8). Additional crystallographic

Enolates ambushed – asymmetric tandem conjugate addition and subsequent enolate trapping with conventional and less traditional electrophiles

• Péter Kisszékelyi and
• Radovan Šebesta

Beilstein J. Org. Chem. 2023, 19, 593–634, doi:10.3762/bjoc.19.44

• acryloyloxazolidinone 183, the reaction gave the expected aldol product 184 in good yields and diastereomeric ratios with a preference toward the syn-adduct (Scheme 47A). Interestingly, when they used methacryloyloxazolidinone 185 as a Michael acceptor, the X-ray analysis of the product showed a rearranged structure

An accelerated Rauhut–Currier dimerization enabled the synthesis of (±)-incarvilleatone and anticancer studies

• Tharun K. Kotammagari,
• Sweta Misra,
• Sayantan Paul,
• Sunita Kunte,
• Rajesh G. Gonnade,
• Manas K. Santra and
• Asish K. Bhattacharya

Beilstein J. Org. Chem. 2023, 19, 204–211, doi:10.3762/bjoc.19.19

• configuration of each enantiomer was determined by single-crystal X-ray analysis. In addition, a one-pot synthesis of (±)-incarviditone has been achieved from rac-rengyolone by using KHMDS as a base. We have also assessed the anticancer activity of all the synthesized compounds in breast cancer cells

• structure of rac-incarvilleatone (1) was determined by spectroscopic methods and single crystal X-ray analysis. However, they were unable to obtain single crystals of either of the enantiomers (−)-incarvilleatone [(−)-1] and (+)-incarvilleatone [(+)-1]. (±)-Incarviditone (2), a novel benzofuranone dimer was

• 331.1150 corresponding to the C16H20O6Na [M + Na]+ ion. After some efforts, to our delight, we could obtain single crystals of (±)-4 using EtOAc as a solvent. Finally, the formation of heterodimerized dihydroxy RC product (±)-4 was confirmed by single-crystal X-ray analysis [16]. It is pertinent to mention

Germacrene B – a central intermediate in sesquiterpene biosynthesis

• Houchao Xu and
• Jeroen S. Dickschat

Beilstein J. Org. Chem. 2023, 19, 186–203, doi:10.3762/bjoc.19.18

• correlations and today preferentially done by NMR spectroscopy or X-ray analysis, is clearly evident from the fact that wrongly reported structures or structures assigned without any comprehensible basis lead to error propagations and highly confusing situations in the literature. Today many reports are only

Catalytic aza-Nazarov cyclization reactions to access α-methylene-γ-lactam heterocycles

• Bilge Banu Yagci,
• Selin Ezgi Donmez,
• Onur Şahin and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2023, 19, 66–77, doi:10.3762/bjoc.19.6

• -Nazarov cyclization of the allyl-substituted imine substrate afforded α-methylene-γ-lactam product 19m in 56% yield. In our previous study, the relative stereochemistry of a tricyclic aza-Nazarov product obtained from a 3,4-dihydroisoquinoline derivative was secured by single-crystal X-ray analysis [35

• X-ray analysis revealed that the relative stereochemistry of lactam 19l with the isobutyl and phenyl groups in a trans arrangement (Figure 1, CCDC 2116978). This finding confirms that both cyclic and acyclic imines undergo the aza-Nazarov cyclization developed in this work via the same

• -lactam heterocycles 19 in up to 76% yield and with good to high diastereoselectivities (4.3:1 to 16:1). We have demonstrated the scalability of the reaction with a gram-scale example. The relative stereochemistry of the α-methylene-γ-lactam products 19 has been determined via the single-crystal X-ray

Inclusion complexes of the steroid hormones 17β-estradiol and progesterone with β- and γ-cyclodextrin hosts: syntheses, X-ray structures, thermal analyses and API solubility enhancements

• Alexios I. Vicatos,
• Zakiena Hoossen and
• Mino R. Caira

Beilstein J. Org. Chem. 2022, 18, 1749–1762, doi:10.3762/bjoc.18.184

• (Figure S23 in Supporting Information File 1) indicating that the single crystal specimens selected for X-ray analysis are representative of their corresponding bulk materials. The crystallographic data for these complexes are summarised in Table 2. The hydrated CD inclusion complexes of 17β-estradiol and

• are isostructural, all of the salient structural features illustrated above and below for the γ-CD·PRO crystal are common to the γ-CD·BES crystal, which was not amenable to single crystal X-ray analysis. Solubility analysis Solubility determinations for the four native CD inclusion complexes (β-CD·BES

A novel bis-triazole scaffold accessed via two tandem [3 + 2] cycloaddition events including an uncatalyzed, room temperature azide–alkyne click reaction

• Ksenia Malkova,
• Andrey Bubyrev,
• Vasilisa Krivovicheva,
• Dmitry Dar’in,
• Alexander Bunev and
• Mikhail Krasavin

Beilstein J. Org. Chem. 2022, 18, 1636–1641, doi:10.3762/bjoc.18.175

• reaction conditions were not further optimized (Scheme 1). The structure of tetracyclic product 5a was unequivocally confirmed by 1H and 13C NMR as well as single-crystal X-ray analysis. Compound 5a is representative of the hitherto undescribed bistriazole benzodiazepine scaffold. However, 5,6,7,8

• intermediate before the click reaction was established by 1H NMR analysis of the reaction mixture). However, the product of this two-step, one-pot reaction (19) was isolated in respectable 61% yield. The structure of compound 19 was confirmed by the single-crystal X-ray analysis which demonstrated that the

• although the yield of product 21 was diminished compared to that of unsubstituted compound 5a. The structure of compound 21 was also confirmed by the single-crystal X-ray analysis (Scheme 3). All compounds were tested against lung cancer cell lines A549 and NCI-H460 and did not show any appreciable effect

A facile approach to spiro[dihydrofuran-2,3'-oxindoles] via formal [4 + 1] annulation reaction of fused 1H-pyrrole-2,3-diones with diazooxindoles

• Pavel A. Topanov,
• Anna A. Maslivets,
• Maksim V. Dmitriev,
• Irina V. Mashevskaya,
• Yurii V. Shklyaev and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2022, 18, 1532–1538, doi:10.3762/bjoc.18.162

• crystal X-ray analysis (CCDC 2201614). As evinced by the NMR data, only one diastereomer of product 3aa was obtained. Contrary to the isoxazole-annulated products of a [3 + 2] cycloaddition of nitrones to FPDs [35], product 3aa appears to be stable on storage in solution, which was confirmed by the fact

• close to that of the products obtained from FPDs annulated with a benzoxazine fragment. The structures of products 3aa, 3ab, and 3ha were approved by single crystal X-ray analysis (CCDC 2201614, CCDC 2201616, CCDC 2201615). We also decided to study the effect the benzo-annulated moiety in FPDs has on

Comparison of crystal structure and DFT calculations of triferrocenyl trithiophosphite’s conformance

• Ruslan P. Shekurov,
• Mikhail N. Khrizanforov,
• Ilya A. Bezkishko,
• Tatiana P. Gerasimova,
• Almaz A. Zagidullin,
• Daut R. Islamov and
• Vasili A. Miluykov

Beilstein J. Org. Chem. 2022, 18, 1499–1504, doi:10.3762/bjoc.18.157

• optimized ttg conformer (left) and for two neighboring molecules (right) from X-ray analysis data. Molecular structures in the solid state of a) (FcS)3P, b) (FcS)3PO [19], and c) (FcS)3PS [7] as established by single crystal X-ray diffraction analyses. C atoms – grey, Fe atoms – brown, O atoms – red, P

1,4,6,10-Tetraazaadamantanes (TAADs) with N-amino groups: synthesis and formation of boron chelates and host–guest complexes

• Artem N. Semakin,
• Ivan S. Golovanov,
• Yulia V. Nelyubina and
• Alexey Yu. Sukhorukov

Beilstein J. Org. Chem. 2022, 18, 1424–1434, doi:10.3762/bjoc.18.148

• by X-ray analysis (vide infra). Unlike 3O-TAAD derivatives 2 [21], the obtained 3N-TAADs, 2N,1O-TAADs, and 1N,2O-TAADs are thermally stable and do not suffer from retro-[2 + 2 + 2]-cyclotrimerization to the open-chain tris-imines upon heating. Thus, the presence of at least one N-amido group

• the formation of host–guest complexes Several of the obtained TAAD derivatives were characterized by X-ray analysis (namely, 4a, 4a·HCl, 4b [35], 4c·HCl, Bn-4c, 8a, 19e·3HCl, 21 and 21·HCl, see Figure 2 and Supporting Information File 2). The geometrical parameters of the 1,4,6,10-tetraazaadamantane

• corresponding TAADs 4a,c–e in good to high isolated yields. Trishydrazone 3b with X = NHCO2Et was somewhat less reactive, and its conversion to heteroadamantane 4b required more harsh conditions (reflux in water). TAADs 4a and 4c were converted into their corresponding hydrochlorides, which were used for X-ray