Synthesis and biological profile of 2,3-dihydro[1,3]thiazolo[4,5-b]pyridines, a novel class of acyl-ACP thioesterase inhibitors

• Jens Frackenpohl,
• David M. Barber,
• Guido Bojack,
• Birgit Bollenbach-Wahl,
• Ralf Braun,
• Rahel Getachew,
• Sabine Hohmann,
• Kwang-Yoon Ko,
• Karoline Kurowski,
• Bernd Laber,
• Rebecca L. Mattison,
• Thomas Müller,
• Anna M. Reingruber,
• Dirk Schmutzler and
• Andrea Svejda

Beilstein J. Org. Chem. 2024, 20, 540–551, doi:10.3762/bjoc.20.46

• synthetic route, which enabled us to introduce a methyl substituent in this position. Likewise, methyl-substituted thiazolo[4,5-b]pyridines 5, 15a, and 15c were synthesized using an optimized Suzuki coupling and served together with compounds 12a–c as key intermediates to explore different reagents and

A new analog of dihydroxybenzoic acid from Saccharopolyspora sp. KR21-0001

• Rattiya Janthanom,
• Yuta Kikuchi,
• Hiroki Kanto,
• Tomoyasu Hirose,
• Arisu Tahara,
• Takahiro Ishii,
• Arinthip Thamchaipenet and
• Yuki Inahashi

Beilstein J. Org. Chem. 2024, 20, 497–503, doi:10.3762/bjoc.20.44

• carbon, and one methyl carbon. A spin system H-6 (δH 6.85)/H-7 (δH 7.33) with an ortho-coupling constant (8.5 Hz) was observed using homonuclear correlation spectrometry (COSY). The heteronuclear multiple bond correlation (HMBC) cross-peaks from H-6 to C-2 (δC 112.4) and C-4 (δC 145.2), and from H-7 to C

Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• , four methines (with one olefinic and two oxygenated), and four non-protonated carbons (with one olefinic and three bonded to oxygen). Detailed interpretation of the COSY spectrum of compound 1 revealed the presence of two discrete proton spin-coupling systems corresponding to a –CH–CH(OH)–CH2–CH2– unit

(E,Z)-1,1,1,4,4,4-Hexafluorobut-2-enes: hydrofluoroolefins halogenation/dehydrohalogenation cascade to reach new fluorinated allene

• Nataliia V. Kirij,
• Andrey A. Filatov,
• Yurii L. Yagupolskii,
• Sheng Peng and
• Lee Sprague

Beilstein J. Org. Chem. 2024, 20, 452–459, doi:10.3762/bjoc.20.40

• all cases, except the reaction in diglyme (Table 1, entry 5), a mixture of (E)- and (Z)-2-bromo-1,1,1,4,4,4-hexafluorobut-2-enes (3a,b) in a ratio of 2:1 was formed. The configuration of the isomers was determined by the 5JFFcis coupling constant in the 19F{H} NMR spectrum (ca. 0 Hz for (Z)-isomer and

• distillation in 52% yield for 6a,b and 34% yield for 7a,b. NMR analysis showed the mixtures of (E)- and (Z)-isomers in both cases with the ratio E/Z = ≈4:5 for 6a,b and E/Z = ≈1:2 for 7a,b. The configuration of the isomers was determined by the 5JFFcis coupling constant in the 19F{H} NMR spectrum (ca. 0 Hz for

• column 7a was isolated in 67% yield. The 19F{1H} NMR spectra of 7a, showed the coupling constant of CF3 and CF3 to be 11.3 Hz, suggesting strongly that product 7a like the original silane 8 has (E)-configuration. Although some olefins presented above were obtained several decades ago, there was almost no

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• arm in an adjacent peptidyl carrier protein (PCP). The amino acid loaded on the PCP then undergoes coupling with the amino acid loaded on the downstream PCP in the condensation (C) domain. Finally, the linear peptide on the PCP in the last module is either hydrolyzed or cyclized by a thioesterase (TE

Mono or double Pd-catalyzed C–H bond functionalization for the annulative π-extension of 1,8-dibromonaphthalene: a one pot access to fluoranthene derivatives

• Nahed Ketata,
• Linhao Liu,
• Ridha Ben Salem and
• Henri Doucet

Beilstein J. Org. Chem. 2024, 20, 427–435, doi:10.3762/bjoc.20.37

• palladium-catalyzed direct intermolecular arylation, followed by a direct intramolecular arylation step. As the C–H bond activation of several benzene derivatives remains very challenging, the preparation of fluoranthenes from 1,8-dibromonaphthalene via Suzuki coupling followed by intramolecular C–H

• contrast, only a few examples of fluoranthene backbone preparation by Pd-catalyzed C–H arylation have been reported. Some examples of the preparation of this skeleton by Suzuki coupling followed by intramolecular C–H coupling have been described [18][19][20][21][22][23][24]. In 2017, Metin, Türkmen and co

• intermolecular Suzuki coupling with an intramolecular C–H arylation, it should be possible to access numerous fluoranthene derivatives from commercially available 1,8-dibromobenzene in a single manipulation (Scheme 1d). Here, we describe i) conditions enabling the annulative π-extension of 1,8-dibromonaphthalene

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• not seen wide applications in nanocatalysis despite its numerous benefits. Therefore, Ozturk made it usable by coupling it with an ionic liquid, creating g-C3N4-SO3H nanoparticles, which displayed high catalytic activity for the Friedel–Crafts arylation of indoles with aldehydes. The optimum product

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• of parameters with which to control reactivity. In this perspective, we provide an overview of the different mechanisms for radical reactions involving NHPI esters, with an emphasis on recent applications in radical additions, cyclizations and decarboxylative cross-coupling reactions. Within these

• years and in the past, they were perceived as fleeting reaction intermediates. Recent progress in photoredox catalysis [6][7][8], electrochemistry [9][10], and the use of transition-metal (TM) catalysts in radical cross-coupling reactions [11] have dramatically expanded the use of radicals in synthesis

• ]. Two decades later, in 2012 the Overman group demonstrated the utility of this transformation in the total synthesis of (–)-aplyviolene, involving the diastereoselective coupling of a tertiary radical and an enone acceptor [38]. Further developments of this chemistry resulted in the general use of NHPI

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• probes, organic light-emitting diodes, and organic solar cells [2][7][8][9]. The principal way for the preparation of these heterocycles involves the coupling of 3H-phenoxazin-3-ones with variously functionalized aromatic amines. This is followed by the cyclization of the initially formed adducts [10][11

• unpaired electrons and the singlet biradical form. In previous studies on the coupling of 3H-phenoxazin-3-one derivatives 8 and 9 with o-phenylenediamine [10][11], the preference was given to the 12Н-quinoxaline[2,3-b]phenoxazine form 7 (Scheme 5). A series of N-aryl derivatives of this form was also

• shifts were measured with a precision of 0.01 ppm, and 0.1 Hz for spin–spin coupling constants J. The assignment of resonance peaks was carried out using COSY, HSQC, and 1H,13C as well as 1H,15N HMBC. Melting points were determined using a PTP (M) apparatus and were left uncorrected. IR spectra were

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• corresponding boronic acid 9 and a Suzuki–Miyaura cross-coupling between 8 and 9 gave rise to dimer 10, followed by the oxidation of both acenaphthene units into 1,8-naphthalic anhydrides. Installation of the thiepine ring was achieved by a double nucleophilic aromatic substitution induced by sodium sulfide

• corresponding bis(thiophenyl) thioether, which then underwent successive bromination and iodination to give intermediate 18. Next, a two-fold Suzuki–Miyaura cross-coupling occurring chemoselectively on the iodinated positions allowed the symmetric extension of the hydrocarbon scaffold, with the insertion of two

• thiepine via a two-fold Suzuki–Miyaura cross-coupling with 1,2-phenylenediboronic pinacol ester. The resulting S-doped extended tribenzothiepine 21 proved stable under ambient conditions for several months and exhibited good solubility in common organic solvents, which is ascribed to the boat-shape

Unveiling the regioselectivity of rhodium(I)-catalyzed [2 + 2 + 2] cycloaddition reactions for open-cage C₇₀ production

• Cristina Castanyer,
• Anna Pla-Quintana,
• Anna Roglans,
• Albert Artigas and
• Miquel Solà

Beilstein J. Org. Chem. 2024, 20, 272–279, doi:10.3762/bjoc.20.28

•  1), unveiled the following reaction mechanism: initially, an oxidative coupling of the two alkyne moieties of our model 1a leads to the formation of INT 1, as previously reported [33]. This step, with a Gibbs energy barrier of 25.7 kcal·mol−1, is the rate-determining step for this process. Next, INT

Nucleophilic functionalization of thianthrenium salts under basic conditions

• Xinting Fan,
• Duo Zhang,
• Xiangchuan Xiu,
• Bin Xu,
• Yu Yuan,
• Feng Chen and
• Pan Gao

Beilstein J. Org. Chem. 2024, 20, 257–263, doi:10.3762/bjoc.20.26

• regioselectivity. Significant advancements in the synthesis of arylthianthrenium salts have prompted a growing interest in their utilization as versatile precursors for the conversion of C–H bonds in arenes into C–C/X bonds through transition-metal-catalyzed cross-coupling processes [12][13][14][15][16][17][18][19

• -metal-catalyzed cross-coupling [32][33] and aminofunctionalization [34] of alkenes were achieved, benefiting from the unique reactivity of organothianthrenium species that are generated through the reaction of alkenes and thianthrene sulfoxide (TT=O) or thianthrene (TT) (Scheme 1b). Alcohols are widely

• accessible and have significant importance in the pharmaceutical industry, positioning them as appealing candidates for C(sp3) coupling due to their availability as a common chemical feedstock. However, due to the high bond dissociation energy of the C–O bond and the poor leaving ability of the hydroxy group

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• ) were measured. The significant difference in the quantum yield values between the compounds was attributed to the increase in the population of triplet excited states because of spin–orbit coupling by bromine atoms. On the contrary with previous studies, it was found that the effect of proton and

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• , leading to the formation of the α-phosphoryl GlcNAc-MurNAc-monopeptide derivative. Subsequently, coupling this intermediate with tetrapeptide, TFA·H-ʟ-Ala-γ-ᴅ-Glu(OMe)-ʟ-Lys(COCF3)-ᴅ-Ala-ᴅ-Ala-OMe under mild conditions resulted in the synthesis of dibenzyl α-phosphoryl GlcNAc-MurNAc-pentapeptide 7 (see

• Supporting Information File 1 for comprehensive information on the synthesis details of the tetrapeptide). To avoid loss of valuable material through HPLC purification, crude 7 is used directly in the next step, and purification performed after the final prenyl phosphate coupling and global deprotection

• . Finally, the benzyl-protecting groups in compound 7 were cleaved via hydrogenolysis, followed by co-evaporation of the resulting crude product in pyridine. This yielded a monopyridyl salt, setting the stage for the final lipid coupling and deprotection sequence. To establish the vital lipid diphosphate

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• approaches resulted in shortening the synthetic routes that were widely employed to access these heterocyclic scaffolds. Over the last decades, the Chan–Lam coupling reaction has drawn great attention among the synthetic chemistry community which contributed to the development of various synthetic routes to

• relevant heterocycles in high efficiency [10]. The Chan–Lam coupling is considered a greener alternative to traditional C–N coupling reactions, as it can be carried out under mild reaction conditions (room temperature and short reaction times, etc.), plus it does not require expensive metals like Pd, being

• Tsvelikhovsky introduced an efficient synthetic strategy to construct diverse dibenzodiazepinones through a sequential methodology consisting of a B–H coupling between o-carbonylanilines and 1,2-dihaloarene derivatives providing access to key precursors that undergo a tandem amination–intramolecular cyclization

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• , 137.3 (Ph), 158.4 (q, JC,F = 38, COCF3), 167.7 (COCH2Cl), 168.1 (COCH2Cl), 168.4 (CO2Me). Note: the values of the coupling constants (JC,F) were calculated using positions of the two central signals of the multiplet; two side lines of the multiplet are not visible due to low signal-to-noise ratio. 19F

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• doublet, t = triplet, q = quartet, dd = doublet of doublets, dt = doublet of triplets, m = multiplet), coupling constant in Hz, integration. Assignments were aided by homonuclear 1H,1H (COSY, TOCSY) and 1H,13C heteronuclear (HSQC, HMBC) two-dimensional correlation spectroscopies. 13C chemical shifts were

Correction: Synthesis of highly substituted fluorenones via metal-free TBHP-promoted oxidative cyclization of 2-(aminomethyl)biphenyls. Application to the total synthesis of nobilone

• Ilya A. P. Jourjine,
• Lukas Zeisel,
• Jürgen Krauß and
• Franz Bracher

Beilstein J. Org. Chem. 2024, 20, 170–172, doi:10.3762/bjoc.20.16

• Ilya A. P. Jourjine Lukas Zeisel Jurgen Krauss Franz Bracher Department of Pharmacy - Center for Drug Research, Ludwig-Maximilians University of Munich, Butenandtstraße 5–13, 81377 Munich, Germany 10.3762/bjoc.20.16 Keywords: cross-dehydrogenative coupling; cyclization; fluorenones; nobilone

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• through scanning tunneling microscopy [85]. For TCBDs bearing unsubstituted anilino (p-H2NC6H4–) groups, their conversion into the p-iodophenyl derivatives via the Sandmeyer reaction and subsequent post-functionalization via the Suzuki and Sonogashira coupling reactions are achieved [86]. In the reaction

• multiple chromophore units induces complexity in the interpretation of the resulting circular dichroism (CD) spectra because of the overlap of several exciton couplets. Thus, exciton coupling CD signals were not discernible for 51–55. Further, regarding 56, the exciton coupling CD signal in the ICT region

• may not be apparent at a glance. Nevertheless, comprehensive computational analyses employing the matrix method suggest that the intense long-wavelength CD signal observed for 56 is due to the coupling of individual helicene-to-TCBD electric-transition dipole moments. The emergence of axial chirality

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• their biological activity and potential applications, continuous efforts have been dedicated to the synthesis of DHPI derivatives. Various synthetic strategies have been explored (Scheme 1), including transition-metal-catalyzed cross-coupling reactions [8][9][10], annulation reaction of carbenoids [11

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• spectrometry. In all cases, the E-configuration of the alkene double bonds was indicated by characteristic coupling constants of the alkene protons (3JH–H = 16 Hz). Absorption properties and photoreactions of styrylpyridine derivatives In acetonitrile solution, the styrylpyridines 2a–g exhibited long

• -degenerative coupling of the dipole moments of the ligand with the DNA bases [72]. The association of the ligands 3e–g with DNA was further confirmed by the formation of negative LD bands with increasing LDR developing in the absorption range of the ligands (λ > 300 nm) (Figure 6B and Supporting Information

Multi-redox indenofluorene chromophores incorporating dithiafulvene donor and ene/enediyne acceptor units

• Christina Schøttler,
• Kasper Lund-Rasmussen,
• Line Broløs,
• Philip Vinterberg,
• Ema Bazikova,
• Viktor B. R. Pedersen and
• Mogens Brøndsted Nielsen

Beilstein J. Org. Chem. 2024, 20, 59–73, doi:10.3762/bjoc.20.8

• a subsequent Glaser–Hay coupling reaction, a RA acceptor unit was introduced to provide a DTF-IF-RA donor–acceptor scaffold with a low-energy charge-transfer absorption and multi-redox behavior. Keywords: alkynes; chromophores; fused-ring systems; heterocycles; redox chemistry; Introduction

• explore further annellation of dihydropyrrole and pyrrole units at the DTF moiety of an IF-DTF. A phosphite-mediated coupling of either 1,3-dithiole-2-thione 2, 7, or 8 with IF dione 1 afforded IF-DTFs 9–11, as shown in Scheme 1. Compound 11 was also obtained from building block 4 via the pyrrolo

• smaller fluorene PAH. These compounds were prepared by a Lawesson’s reagent-promoted coupling between fluorenone 5 and the Ts-protected 1,3-dithiole-2-thione building blocks 2 and 3, respectively, shown in Scheme 3 (albeit in modest yields). Fluorene-based DTF compounds have previously been explored in

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• trifluoromethyl groups [20] and the cross-coupling of aryl halides [21]. Like phosphonium salts in general are used as catalysts [22][23], phosphonium salts based on ortho-hydroxy-substituted phosphines received particular attention because of their zwitterionic nature and have been used as catalysts in the

• regarded as stable phosphonium enolate zwitterions. The first zwitterions of this type were published in 1955 [31], but the first crystal structure of a phosphonium enolate zwitterion was reported only in 2007 by Zhu et al., who synthesized the compound via a three-component coupling between an

• compounds share a characteristic doublet of doublet pattern centered in the range of 6.21 to 6.09 ppm depending on the Michael acceptor used. This signal is attributed to the aromatic proton in position 5 of the 2,4-di-tert-butylphenol substituent that experiences a meta-coupling to the aromatic proton on

Facile access to pyridinium-based bent aromatic amphiphiles: nonionic surface modification of nanocarbons in water

• Lorenzo Catti,
• Shinji Aoyama and
• Michito Yoshizawa

Beilstein J. Org. Chem. 2024, 20, 32–40, doi:10.3762/bjoc.20.5

• -dibromopyridine. Negishi cross-coupling with 9-anthrylzinc chloride in the presence of PdCl2(PhCN)2/P(t-Bu)3 as catalyst afforded the common precursor 3,5-dianthrylpyridine (prePA), a simple yet novel bent building block, in 81% yield. For the synthesis of the methyl derivative, prePA was N-alkylated with excess

Synthesis of N-acyl carbazoles, phenoxazines and acridines from cyclic diaryliodonium salts

• Nils Clamor,
• Mattis Damrath,
• Thomas J. Kuczmera,
• Daniel Duvinage and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2024, 20, 12–16, doi:10.3762/bjoc.20.2

• efficient method to synthesize N-acyl carbazoles from readily available iodolium salt and amides via a ring-opening/intramolecular coupling cascade (Scheme 1c) [20][21][22][23][24][25][26][27][28][29][30]. Our group recently explored principle synthetic pathways of hetero- and carbocyclic 5- and 6-membered