Streamlined modular synthesis of saframycin substructure via copper-catalyzed three-component assembly and gold-promoted 6-endo cyclization

• Asahi Kanno,
• Ryo Tanifuji,
• Satoshi Yoshida,
• Sota Sato,
• Saori Maki-Yonekura,
• Kiyofumi Takaba,
• Jungmin Kang,
• Kensuke Tono,
• Koji Yonekura and
• Hiroki Oguri

Beilstein J. Org. Chem. 2025, 21, 226–233, doi:10.3762/bjoc.21.14

• the natural product, cyanosafracin B (4), bearing a para-quinone moiety at the left end [14]. Considering the relationships between the aromatic ring structures and DNA alkylating ability, we envisioned a modular and flexibly modifiable synthetic approach that would allow for the initial installation

Synthesis of acenaphthylene-fused heteroarenes and polyoxygenated benzo[j]fluoranthenes via a Pd-catalyzed Suzuki–Miyaura/C–H arylation cascade

• Merve Yence,
• Dilgam Ahmadli,
• Damla Surmeli,
• Umut Mert Karacaoğlu,
• Sujit Pal and
• Yunus Emre Türkmen

Beilstein J. Org. Chem. 2024, 20, 3290–3298, doi:10.3762/bjoc.20.273

• total synthesis of the fungal natural product bulgarein. Keywords: acenaphthylene-fused heteroarenes; benzo[j]fluoranthenes; C–H arylation; fluoranthenes; heterocycles; Introduction An important subclass of polycyclic aromatic hydrocarbons (PAHs) [1] is comprised of fluoranthenes, which have been the

• -based natural product, which was discovered to induce topoisomerase I-mediated DNA cleavage [16][17]. For the construction of the fluoranthene skeleton, a broad range of synthetic strategies including C–H arylation [18][19][20][21][22], Diels–Alder [7][8][23][24][25] and [2 + 2 + 2] cycloadditions [26

• [54]. It was also shown by the authors that compound 18 could be efficiently converted to the fungal natural product bulgarein (5) in only two steps. Our synthesis started with the mono-iodination of 1,8-dimethoxynaphthalene (20), which was prepared in single step from the commercially available 1,8

Discovery of ianthelliformisamines D–G from the sponge Suberea ianthelliformis and the total synthesis of ianthelliformisamine D

• Sasha Hayes,
• Yaoying Lu,
• Bernd H. A. Rehm and
• Rohan A. Davis

Beilstein J. Org. Chem. 2024, 20, 3205–3214, doi:10.3762/bjoc.20.266

• . Ianthelliformisamine D (4) contains a rare N-(3-aminopropyl)-2-pyrrolidone moiety only found in <30 natural products. Owing to the novelty of compound 4, we undertook the first total synthesis of this natural product, which was achieved in three steps. Keywords: ianthelliformisamine; marine sponge; natural products

• ], therefore it is no surprise that sponges are highly sought after for novel bioactive metabolites and have been a major focus of marine natural product drug discovery for over 70 years. The identification of ianthelliformisamines A–C from the Australian marine sponge Suberea ianthelliformis, which displayed

• undertook the first total synthesis of this natural product, which was successfully achieved in only three steps and respectable yield. All newly identified metabolites were subsequently assessed for their ability to inhibit the growth of planktonic P. aeruginosa PAO1 and formation of biofilms. Results and

Chemical structure metagenomics of microbial natural products: surveying nonribosomal peptides and beyond

• Thomas Ma and
• John Chu

Beilstein J. Org. Chem. 2024, 20, 3050–3060, doi:10.3762/bjoc.20.253

• Thomas Ma John Chu Department of Chemistry, National Taiwan University, Taipei City 10617, Taiwan 10.3762/bjoc.20.253 Abstract Bioactivity-guided fractionation (BGF) has historically been a fruitful natural product discovery workflow. However, it is plagued by increasing rediscovery rates in

• recent years and new methods capable of exploring the natural product chemical space more broadly and more efficiently is in urgent need. Chemical structure metagenomics as one such method is the theme of this Perspective. It emphasizes a chemical-structure-centered viewpoint toward natural product

• research. Key to chemical structure metagenomics is the ability to predict the structure of a natural product based on its biosynthetic gene sequences, which facilitated the discovery of numerous new bioactive molecules and helped uncover oversampled/underexplored niches of decades of BGF based discovery

N-Glycosides of indigo, indirubin, and isoindigo: blue, red, and yellow sugars and their cancerostatic activity

• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 2840–2869, doi:10.3762/bjoc.20.240

• photophysical materials. While unsubstituted (parent) indigo (1a) is not a natural product, Tyrian purple (also known as Shellfish purple) is present in nature and represents, besides indigo, an important indigo derivative used as a dye for thousands of years [4]. Several types of cancers, Alzheimer's disease

Young investigators in natural products chemistry, biosynthesis, and enzymology

• Jeffrey D. Rudolf,
• Lena Barra and
• Takayoshi Awakawa

Beilstein J. Org. Chem. 2024, 20, 2720–2721, doi:10.3762/bjoc.20.229

• , Japan 10.3762/bjoc.20.229 There is just something about natural products. When staring at these structurally complex molecules produced by diverse organisms on our planet, one may wonder why a particular natural product is made, how it is made, how I can make it, or how I can use it. The isolation and

• structural elucidation of a single natural product can inspire a wide array of scientific disciplines. Natural products, first as bioactive metabolites in traditional medicines and now as isolated or (bio)synthesized metabolites, are one of the most important sources of therapeutics historically and today

• present this collection of 19 Full Research Papers, three Letters, and nine Review articles from our colleagues around the world. Topics covered include natural product discovery efforts from a variety of organisms, genome and transcriptome mining and bioinformatics of natural products, biosynthetic gene

The scent gland composition of the Mangshan pit viper, Protobothrops mangshanensis

• Jonas Holste,
• Paul Weldon,
• Donald Boyer and
• Stefan Schulz

Beilstein J. Org. Chem. 2024, 20, 2644–2654, doi:10.3762/bjoc.20.222

• investigated by direct inlet atmospheric solids analysis probe-atmospheric mass spectrometry (ASAP-APCI-MS), which allows the detection of secondary metabolites up to a molecular mass of 1,500 Da, but no additional compounds were detected. A more detailed description of the use of this method in natural

• product research has recently been published by our team [41]. Conclusion 4,6-Dimethylalk-5-enoic acids are important components of the scent gland secretion of Protobothrops mangshanensis. Since NMR analysis was not possible due to the low amounts present, the compounds were identified only with the help

A review of recent advances in electrochemical and photoelectrochemical late-stage functionalization classified by anodic oxidation, cathodic reduction, and paired electrolysis

• Nian Li,
• Ruzal Sitdikov,
• Ajit Prabhakar Kale,
• Joost Steverlynck,
• Bo Li and
• Magnus Rueping

Beilstein J. Org. Chem. 2024, 20, 2500–2566, doi:10.3762/bjoc.20.214

• undivided cell using a boron-doped diamond (BDD) anode and a platinum cathode at constant current, resulting in 1,4-dicarbonyls with yields up to 91% and enantiomeric excesses (ee) greater than 99%. This methodology was demonstrated in the LSF of two complex natural product derivatives: a β-ionone

Visible-light-mediated flow protocol for Achmatowicz rearrangement

• Joachyutharayalu Oja,
• Sanjeev Kumar and
• Srihari Pabbaraja

Beilstein J. Org. Chem. 2024, 20, 2493–2499, doi:10.3762/bjoc.20.213

• as sun light, as a greener approach and easily available biomass-derived furfuryl alcohols as starting materials. The flow platform with the developed protocol was utilized successfully to make several dihyropyranones that may find wide applications in medicinal and materials chemistry and natural

• product synthesis. Scope of the integrated continuous photo-flow (visible light)-induced Achmatowicz rearrangement reaction. Reaction conditions: Stock solution (A) comprise of 2/K2S2O8/Ru(bpy)3Cl·6H2O/ACN/DMSO/H2O in a molar ratio of 1:1:0.005:70:54:408; yields are based on isolated yields. Proposed

Synthesis and conformational analysis of pyran inter-halide analogues of ᴅ-talose

• Olivier Lessard,
• Mathilde Grosset-Magagne,
• Paul A. Johnson and
• Denis Giguère

Beilstein J. Org. Chem. 2024, 20, 2442–2454, doi:10.3762/bjoc.20.208

• chiral halides: F, Cl, Br, I) [19]. Only a handful of natural product syntheses have been reported [20][21], despite the promising biological activity of these unique inter-halides [22]. For our part, we recently reported the synthesis of contiguous inter-halide-bearing stereocenters using a Chiron

Improved deconvolution of natural products’ protein targets using diagnostic ions from chemical proteomics linkers

• Andreas Wiest and
• Pavel Kielkowski

Beilstein J. Org. Chem. 2024, 20, 2323–2341, doi:10.3762/bjoc.20.199

• trifunctional linker AzKTB (Figure 14) was introduced by Wright et al. to study protein N-myristoylation and was later used for the identification of the natural product callyspongynic acid and zerumbone protein targets [117][121][122]. The AzKTB linker integrates biotin for affinity enrichment with a TAMRA

Natural resorcylic lactones derived from alternariol

• Joachim Podlech

Beilstein J. Org. Chem. 2024, 20, 2171–2207, doi:10.3762/bjoc.20.187

• natural product F [32]) will not be discussed (with scarce exceptions, when the respective compounds are most likely derived from alternariol or from related natural products). Compounds, which have not been isolated as natural products, but are synthetic derivatives [33] (e.g., G) of natural products, or

• : Total synthesis and comparison of the NMR spectra revealed that this natural product is identical with altertenuol [41], whose structure was correctly given previously [42]. Furthermore, the originally proposed structures [43] of graphislactones E and F were corrected after total synthesis and

• altertenuol, but is in fact a different natural product. The originally proposed structure of altenuisol turned out to be wrong; it is in fact identical with the structure of altertenuol and the name ‘altenuisol’ is thus obsolete (although it is still frequently used in the community) [41]. The occasionally

The Groebke–Blackburn–Bienaymé reaction in its maturity: innovation and improvements since its 21st birthday (2019–2023)

• Cristina Martini,
• Muhammad Idham Darussalam Mardjan and
• Andrea Basso

Beilstein J. Org. Chem. 2024, 20, 1839–1879, doi:10.3762/bjoc.20.162

• molecules, with the possibility of generating pseudo-natural compound libraries: Cortés-García et al. [44] applied this strategy to vouacapane. The authors developed a two-step reaction for the synthesis of fused vouacapane-azoles 36. Starting from the 6-β-acetoxyvouacapane (34), a natural product isolated

Chemo-enzymatic total synthesis: current approaches toward the integration of chemical and enzymatic transformations

• Ryo Tanifuji and
• Hiroki Oguri

Beilstein J. Org. Chem. 2024, 20, 1693–1712, doi:10.3762/bjoc.20.151

• comprehensive understanding of the chemo-enzymatic synthetic approach, we refer the reader to recent excellent reviews that provide multiple perspectives on the topic [1][2][3][4][5][6][7][8][9][10]. Review Late-stage oxidative transformations of natural product scaffolds: cotylenol and brassicicenes Chemo

• natural product family sharing the highly substituted methyl cyclohexene moiety, Lei and co-workers synthesized analogs of biosynthetic intermediates 44 and 48, and subjected them to the established chemo-enzymatic synthetic process (Scheme 6A) [56]. MaDA exhibited a relatively broad substrate tolerance

• . Iterative Pictet–Spengler cyclizations: saframycin A and jorunnamycin A Saframycin A (5) was isolated from Streptomyces lavendulae, and a number of related alkaloid families such as safracins and renieramycins have been identified from both soil and marine microorganisms [89][90]. These natural product

Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry

• Maria-Paula Schröder,
• Isabel P.-M. Pfeiffer and
• Silja Mordhorst

Beilstein J. Org. Chem. 2024, 20, 1652–1670, doi:10.3762/bjoc.20.147

• other bioactive compounds. By providing an overview of the various methylation options available, this review is intended to emphasise the biocatalytic potential of RiPP methyltransferases and their impact on the field of natural product chemistry. Keywords: biocatalysis; methylation; post

• -translational modifications; ribosomal peptides; SAM-dependent enzymes; Introduction In the complex landscape of natural product biosynthesis, ribosomally synthesised and post-translationally modified peptides (RiPPs) stand out as a fascinating class of compounds with both structural diversity and unique

• encoded in the same BGC as the precursor peptide install post-translational modifications in the core peptide. Finally, a protease releases the modified core peptide, creating the mature natural product [2]. The transfer of a methyl group is a common post-translational modification in RiPP biosynthesis

Polymer degrading marine Microbulbifer bacteria: an un(der)utilized source of chemical and biocatalytic novelty

• Weimao Zhong and
• Vinayak Agarwal

Beilstein J. Org. Chem. 2024, 20, 1635–1651, doi:10.3762/bjoc.20.146

• commonly detected in the commensal marine microbiomes. These bacteria have been recognized for their ability to degrade polysaccharides and other polymeric materials. Increasingly, Microbulbifer genomes indicate these bacteria to be an untapped reservoir for novel natural product discovery and biosynthetic

• barriers to natural product discovery; high rediscovery rates, reliance on largely serendipitous response in bioactivity assays, and the resources and expertise required for their structure determination being the primary impediments [1][2]. With this background, accessing biological sources that have not

• yet been extensively mined for natural product discovery is a promising route, one which, at the very least, promises to ameliorate the problem of continued rediscovery of known natural products. This review outlines the recent progress that has been realized using bacteria of the genus Microbulbifer

Mining raw plant transcriptomic data for new cyclopeptide alkaloids

• Draco Kriger,
• Michael A. Pasquale,
• Brigitte G. Ampolini and
• Jonathan R. Chekan

Beilstein J. Org. Chem. 2024, 20, 1548–1559, doi:10.3762/bjoc.20.138

• biosynthetic enzymes. Ultimately proteolysis releases the modified core peptide as the mature RiPP natural product [5][6]. In the case of the newly described burpitide family of RiPPs, the defining feature is the presence of amino acid side-chain crosslinks installed by a copper-dependent burpitide cyclase [4

• . ameranicus using UHPLC-HRMS/MS. Finally, we generated a global natural product social (GNPS) network to show the correlation between metabolites from these different plant species (Figure 5) [29]. Cyclopeptides in Ceanothus americanus The GNPS network showed the presence of multiple features from C

Selectfluor and alcohol-mediated synthesis of bicyclic oxyfluorination compounds by Wagner–Meerwein rearrangement

• Ziya Dağalan,
• Muhammed Hanifi Çelikoğlu,
• Saffet Çelik,
• Ramazan Koçak and
• Bilal Nişancı

Beilstein J. Org. Chem. 2024, 20, 1462–1467, doi:10.3762/bjoc.20.129

• study, benzonorbornadiene (1a) and the chiral natural product (+)-camphene (1b) were used as bicyclic alkenes. Safe, easily soluble, easy to use, stable solid, reactive and commercial available selectfluor [18][27][28] was selected for electrophilic fluorination source. Water and various alcohols were

• (Scheme 1). The configurations of fluoroalkoxy compounds 3a–j were confirmed by the COSY 2D-NMR spectrum of compound 3a (Supporting Information File 1). Additionally, (+)-camphene (1b), a chiral natural product, was used as another alkene for fluoroalkoxy reactions. From (+)-camphene (1b), fluoroalkoxy

Synthetic applications of the Cannizzaro reaction

• Bhaskar Chatterjee,
• Dhananjoy Mondal and
• Smritilekha Bera

Beilstein J. Org. Chem. 2024, 20, 1376–1395, doi:10.3762/bjoc.20.120

• [87]. The sequence of transformations commencing from the aldehyde 64 afforded the desymmetrized biaryl derivative 66 and proceeded towards the final natural product 67 (Scheme 20). Applying crossed-Cannizzaro reaction: Mondal and coauthors demonstrated an efficient application of the aldol/crossed

Generation of alkyl and acyl radicals by visible-light photoredox catalysis: direct activation of C–O bonds in organic transformations

• Mithu Roy,
• Bitan Sardar,
• Itu Mallick and
• Dipankar Srimani

Beilstein J. Org. Chem. 2024, 20, 1348–1375, doi:10.3762/bjoc.20.119

• and provide the desired products with good yield. Cyclopentanol-derived oxalates, some heterocyclic oxalates, and natural-product-derived oxalates were also compatible with this method. In 2018, Chu and co-workers [47] devised an elegant protocol for achieving syn-alkylarylation of terminal alkynes

Computation-guided scaffold exploration of 2E,6E-1,10-trans/cis-eunicellanes

• Zining Li,
• Sana Jindani,
• Volga Kojasoy,
• Teresa Ortega,
• Erin M. Marshall,
• Khalil A. Abboud,
• Sandra Loesgen,
• Dean J. Tantillo and
• Jeffrey D. Rudolf

Beilstein J. Org. Chem. 2024, 20, 1320–1326, doi:10.3762/bjoc.20.115

• ]. Here, we sought to understand the molecular basis of chemical and thermal reactivities of these diterpene skeletons. We also took advantage of their intrinsic chemical properties to transform the eunicellanes in functionalized tricyclic skeletons of natural product importance. Results and Discussion

Oxidative hydrolysis of aliphatic bromoalkenes: scope study and reactivity insights

• Amol P. Jadhav and
• Claude Y. Legault

Beilstein J. Org. Chem. 2024, 20, 1286–1291, doi:10.3762/bjoc.20.111

• heterocyclic compounds [20][21][22]. Particularly dialkyl bromoketones have been utilized in natural product synthesis [23][24][25], also as a precursor to reactive oxyallyl cation intermediates [26][27][28], and for their photochemical reactions [29]. However, the direct halogenation of unsymmetrical ketones

Synthesis and optical properties of bis- and tris-alkynyl-2-trifluoromethylquinolines

• Stefan Jopp,
• Franziska Spruner von Mertz,
• Peter Ehlers,
• Alexander Villinger and
• Peter Langer

Beilstein J. Org. Chem. 2024, 20, 1246–1255, doi:10.3762/bjoc.20.107

• which can be found in several natural and synthetic products and many of them show interesting pharmacological properties [1][2][3]. Quinine, for example, is a widely known natural product which was first isolated from the cinchona tree besides many other quinoline-containing cinchona alkaloids [4]. It

A Diels–Alder probe for discovery of natural products containing furan moieties

• Alyssa S. Eggly,
• Namuunzul Otgontseren,
• Carson B. Roberts,
• Amir Y. Alwali,
• Haylie E. Hennigan and
• Elizabeth I. Parkinson

Beilstein J. Org. Chem. 2024, 20, 1001–1010, doi:10.3762/bjoc.20.88

• , natural products containing furan moieties (Figure 1A) are of interest as they have shown promising biological activities. One well-studied example is the antifungal flufuran, which was isolated from Aspergillus flavus [2]. Another example is plakorsin D, an anticancer polyketide natural product which was

• alternative alkyl chains likely exist in other bacterial strains. Lastly, the probe was tested with flufuran (23) to show that it can also identify a natural product that is not an MMF. The maleimide probe was tested with the natural MMF molecules and the library of MMF derivatives in the same fashion as

• figure were run at 25-times the extracted concentration. Representative data from three experiments is shown. Conversion of various synthetic substrates when reacted with the maleimide probe.a Conversion of various natural product substrates when reacted with the maleimide probe.a Supporting Information

Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria

• Kara A. Strickland,
• Brenda Martinez Rodriguez,
• Ashley A. Holland,
• Shelby Wagner,
• Michelle Luna-Alva,
• David E. Graham and
• Jonathan D. Caranto

Beilstein J. Org. Chem. 2024, 20, 830–840, doi:10.3762/bjoc.20.75

• /bjoc.20.75 Abstract Linear nitramines (R–N(R′)NO2; R′ = H or alkyl) are toxic compounds, some with environmental relevance, while others are rare natural product nitramines. One of these natural product nitramines is N-nitroglycine (NNG), which is produced by some Streptomyces strains and exhibits

• , reductively decomposes the nitramine functionality of RDX to form •NO2 [38], a toxic reactive nitrogen species. Additionally, NNG is a structural analog of another natural product 3-nitropropionate (3NP) found in plants and fungi [39]. This highly toxic compound inhibited succinate dehydrogenase and other

• portion of NNG would be expected to exist as the inhibitory nitronate form at physiological pH, suggesting another potential role for nitramine groups as potent warheads in antibiotics. This antibiotic activity may also require further modification of NNG or its incorporation into a larger natural product