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Search for "scaffold" in Full Text gives 644 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.
Photoswitchable glycoligands targeting Pseudomonas aeruginosa LecA
Beilstein J. Org. Chem. 2024, 20, 1486–1496, doi:10.3762/bjoc.20.132
- rather similar Kd values. In order to rationalize this difference in binding mechanism, molecular models were obtained for selected low-energy conformations of E- and Z-isomers of a “model” scaffold of the para-azobenzene derivative in the binding site of LecA (Figure 5), by simple superpositioning of
- represents a ΔG value of −30 kJ/mol, corresponding to a Kd of approx 5 μM in the experimental conditions. (B) Manual docking of scaffold for compound 3 with selected low energy conformations of the E-isomer (yellow sticks) and Z-isomer (cyan sticks) superimposed on conserved position of galactose in all LecA
Synthesis of substituted triazole–pyrazole hybrids using triazenylpyrazole precursors
Beilstein J. Org. Chem. 2024, 20, 1396–1404, doi:10.3762/bjoc.20.121
- sources and thus as building blocks for synthesizing pyrazolyltriazoles by CuAAC reactions. To find a feasible approach to pyrazolyltriazoles of type 1 with a highly substituted scaffold, we decided to explore the benefits of a modification of the triazene-protected pyrazole core. In the next step, a
Computation-guided scaffold exploration of 2E,6E-1,10-trans/cis-eunicellanes
Beilstein J. Org. Chem. 2024, 20, 1320–1326, doi:10.3762/bjoc.20.115
- -epoxide 9, which readily crystallized (Figure 2A and Figures S5–S10, Table S1 in Supporting Information File 1). Similarly, the 6,7-epoxy derivatives of klysimplexin R (3) and microeunicellene (4) were recently synthesized and isolated [11][21]; 3 cyclized to the 6/6/6-scaffold after the addition of acid
- . Scaffold exploration of the eunicellane skeleton During protonation-induced cyclization of 1 and 2, the C6–C7 alkene showed higher nucleophilicity than either of the other two double bonds likely due to the unique conformation of the eunicellane skeleton. This selective reactivity was further supported
- of DFT calculations on the atropisomers 10a/10b and the free energy barriers for clockwise (blue) and counter-clockwise (red) rotations. Scaffold exploration of the 2E-trans-eunicellane skeleton. Supporting Information Supporting Information File 90: Experimental methods, NMR and MS spectra, and
Phenotellurazine redox catalysts: elements of design for radical cross-dehydrogenative coupling reactions
Beilstein J. Org. Chem. 2024, 20, 1292–1297, doi:10.3762/bjoc.20.112
- catalytically active intermediate(s), possibly including chalcogen bonding activation ability of the substrates [38]. Conclusion In conclusion, we demonstrated the importance of the phenotellurazine scaffold, bearing both a Te(II) center as well as a N-bridge, for redox catalytic activity. However, although the
Synthesis and optical properties of bis- and tris-alkynyl-2-trifluoromethylquinolines
Beilstein J. Org. Chem. 2024, 20, 1246–1255, doi:10.3762/bjoc.20.107
- on the quinoline scaffold and on the arylalkyne moiety permits the fine tuning of the optical properties. Natural and synthetic compounds containing a quinoline or quinolone core-structure. ORTEP of 6b (CCDC 2322985). ORTEP of 9f (CCDC 2322983). ORTEP of 12d (CCDC 2322984). UV–vis and emission
The Ugi4CR as effective tool to access promising anticancer isatin-based α-acetamide carboxamide oxindole hybrids
Beilstein J. Org. Chem. 2024, 20, 1213–1220, doi:10.3762/bjoc.20.104
- , we highlight the reputation of this reaction approach to access number and scaffold diversity of a library of isatin-based α-acetamide carboxamide oxindole hybrids, promising anticancer agents, in a mild and fast sustainable reaction process. The library was tested against six human solid tumor cell
- aspects. Multicomponent reactions (MCRs) are remarkable tools which demonstrated great potential for more sustainable production of active pharmaceutical ingredients (API’s). These flexible and versatile one-pot transformations in which three or more reagents are combined to access a new complex scaffold
- and Figure 2). Like the oxindole scaffold, 1,2,3-triazole is also considered a privileged unit in drug discovery since compounds having this structure have a broad spectrum of biological activities, and have been widely used to create anticancer drug candidates [24][25]. The copper-catalyzed azide
Synthesis of 1,4-azaphosphinine nucleosides and evaluation as inhibitors of human cytidine deaminase and APOBEC3A
Beilstein J. Org. Chem. 2024, 20, 1088–1098, doi:10.3762/bjoc.20.96
- scaffold, compounds Va–c (Figure 1B), in which the N3 atom present in the nucleobase of IV is replaced by CH2. We assumed that this change should not significantly affect the inhibitory potential but rather increase the stability of the target nucleosides in water and allow chemical incorporation into
- combination of both. Difficulties in the Hilbert–Johnson reaction and the low yield observed for nucleoside 14 prompted us to use an alternative option for the synthesis of the target nucleosides based on the assembly of a nucleobase on the 2-deoxyribofuranos-1-yl scaffold. Hydrogenation of azide 15 [69
Novel analogues of a nonnucleoside SARS-CoV-2 RdRp inhibitor as potential antivirotics
Beilstein J. Org. Chem. 2024, 20, 1029–1036, doi:10.3762/bjoc.20.91
- modifications of HeE1-2Tyr: conversion of the core from a benzothiazole to a benzoxazole moiety and two different scaffold simplifications, respectively. We provide a novel synthetic approach and, in addition, evaluate the final molecules in an in vitro polymerase assay for biological activity. Keywords
Innovative synthesis of drug-like molecules using tetrazole as core building blocks
Beilstein J. Org. Chem. 2024, 20, 950–958, doi:10.3762/bjoc.20.85
- ready-to-screen drug-like molecules remains a key challenge in the medicinal chemistry field [5][6]. Tetrazole is considered as a privileged scaffold in pharmaceutical and medicinal chemistry, used as a carboxylic acid bioisostere and a cis-amide mimic contributing to improvements in lipophilicity
- moiety is introduced in a late-stage-modification approach, mostly from nitriles or isocyanides (Figure 1b) [13]. On the other hand, accessing diverse tetrazole scaffolds from MCRs, typically involves first de novo construction of the tetrazole scaffold and subsequent post-modifications (Figure 1c) [14
- of the de novo approach and furthermore provides an extra efficiency, complexity and diversity in the same number of steps (Figure S1, Supporting Information File 1). Also, it offers a flexibility of placement of the tetrazole moiety in the scaffold and enables additional facile post-modifications
Enantioselective synthesis of β-aryl-γ-lactam derivatives via Heck–Matsuda desymmetrization of N-protected 2,5-dihydro-1H-pyrroles
Beilstein J. Org. Chem. 2024, 20, 940–949, doi:10.3762/bjoc.20.84
- -lactam ring is a privileged scaffold widely present in drugs and natural products [12][13][14], as shown in Scheme 1. Herein, we report the effective desymmetrization strategy of N-protected 2,5-dihydro-1H-pyrroles using aryldiazonium salts and the chiral N,N-ligand (S)-PyraBox (Scheme 2). The obtained
(Bio)isosteres of ortho- and meta-substituted benzenes
Beilstein J. Org. Chem. 2024, 20, 859–890, doi:10.3762/bjoc.20.78
- development of these important bioisosteres. We will highlight both the synthetic routes used to access the proposed bioisosteric scaffolds, as well as any subsequent derivatization thereof which help expand their utility. Our aim is to provide an overview of the types of scaffold that can be prepared with
- isosteres and bioisosteres. Scaffolds suggested for the replacement of ortho- or meta-benzenes shall be defined as a geometrical isostere if they exhibit similar geometric properties to the parent compound. A scaffold shall be defined as a bioisostere only if both its geometrical properties and its
- 1,2-BCH (+)-23 and ortho-benzene telmisartan has been reported by Walker and co-workers (Figure 4) [34]. They found that both the substituent distance d and scaffold carbon distance r of 1,2-BCH (+)-23 closely resemble the ones found in telmisartan. While this agreement extends to the substituent
Discovery and biosynthesis of bacterial drimane-type sesquiterpenoids from Streptomyces clavuligerus
Beilstein J. Org. Chem. 2024, 20, 815–822, doi:10.3762/bjoc.20.73
- , share the drimanyl scaffold, their biosynthetic pathways, particularly the terpene cyclases synthesizing the drimanyl structures, show substantial divergence from DMT pathways [21][30][31][32]. This fundamental difference in biosynthetic mechanisms serves to categorize DMSs and drimentines into distinct
Genome mining of labdane-related diterpenoids: Discovery of the two-enzyme pathway leading to (−)-sandaracopimaradiene in the fungus Arthrinium sacchari
Beilstein J. Org. Chem. 2024, 20, 714–720, doi:10.3762/bjoc.20.65
- TCs subsequently catalyze the second cyclization to construct the polycyclic scaffold of natural products [5]. In plants, two independent αβγ tri-domain TCs, ent-CPP synthase (CPS) and ent-kaurene synthase (KS), are often used for this conversion [6], and a single bifunctional enzyme that successively
SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes
Beilstein J. Org. Chem. 2024, 20, 701–713, doi:10.3762/bjoc.20.64
- the development of the azidobenziodazolone scaffold [17]. This class of derivative showed an improved safety profile while retaining the redox properties of the original reagent. A single example of azido-alkynylation has been reported by Ramasastry and co-workers during a mechanistic study for an
- homopropargylic azide was formed using pyrrole 1e it could not be isolated due to its instability. No conversion was observed when the transformation was attempted directly on the indole scaffold 1f. Only a small amount of product was formed using styrene 1g bearing an extra α-phenyl substituent. A slightly
HPW-Catalyzed environmentally benign approach to imidazo[1,2-a]pyridines
Beilstein J. Org. Chem. 2024, 20, 628–637, doi:10.3762/bjoc.20.55
- existing ones. Keywords: GBB-3CR; imidazo[1,2-a]pyridine; microwave; phosphotungstic acid; Introduction Imidazo[1,2-a]pyridine is a privileged structure that plays an important role in organic synthesis and in the pharmaceutical industry. This scaffold is present in drugs with several biological
A laterally-fused N-heterocyclic carbene framework from polysubstituted aminoimidazo[5,1-b]oxazol-6-ium salts
Beilstein J. Org. Chem. 2024, 20, 621–627, doi:10.3762/bjoc.20.54
- -step ynamide annulation and imidazolium ring-formation sequence. Metalation with Au(I), Cu(I) and Ir(I) at the C2 position provides an L-shaped NHC ligand scaffold that has been validated in gold-catalysed alkyne hydration and arylative cyclisation reactions. Keywords: annulation; carbene; gold
Synthesis and biological profile of 2,3-dihydro[1,3]thiazolo[4,5-b]pyridines, a novel class of acyl-ACP thioesterase inhibitors
Beilstein J. Org. Chem. 2024, 20, 540–551, doi:10.3762/bjoc.20.46
- , Bayer AG, Industriepark Höchst, 65926 Frankfurt am Main, Germany 10.3762/bjoc.20.46 Abstract The present work covers novel herbicidal lead structures that contain a 2,3-dihydro[1,3]thiazolo[4,5-b]pyridine scaffold as structural key feature carrying a substituted phenyl side chain. These new compounds
- 1,8-naphthyridine scaffold can also be formally substituted by an isothiazole group, as can be seen in isothiazolo[3,4-b]pyridine 6 [15]. Thus, several bicyclic heteroaromatic motifs containing two nitrogen atoms serve as structural surrogates of cinmethylin (1), bearing a substituted 7-oxabicyclo
- [2.2.1]heptane scaffold [16]. Based on the findings outlined above and based on other plant-specific modes of action, it is plausible that FAT inhibitors encompass a broader range of structural motifs [16][17]. Herein, we present our approach to complement heteroaromatic lead structures 4–6 by
Switchable molecular tweezers: design and applications
Beilstein J. Org. Chem. 2024, 20, 504–539, doi:10.3762/bjoc.20.45
- et al. exploited the same scaffold to control the physical properties of materials. They incorporated planar terpyridine-alkyne Pt complexes as functional units and studied the intercalation of a Pt-complex guest in order to obtain Pt–Pt interactions in solution [23]. In the native state of 3, both
Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination
Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43
- observed rate was outside of one standard deviation from the average of 3 trials, confirming the overall reactivity trend. In hindsight, the ligand effect here may be expected to be small since the bisbiphenyl scaffold contains 2 of 3 identical substituents. Nevertheless, these comparisons confirm the
Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas
Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41
- gave no noticeable conversion on analysis by 19F NMR spectroscopy, and a large excess of fluorine led to formation of a dark brown tar from which no useful product could be isolated. On the bases of these failed attempts, coupled with our previous experiences with the DBM scaffold [16][17][36], we used
Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells
Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39
- investigated the influence of a modification of 2′-OH in the AMS scaffold with different functional groups on binding to target enzymes and bacterial cell penetration. The inhibitor 7 with a cyanomethyl group at 2′-OH showed desirable inhibitory activity against both recombinant and intracellular gramicidin S
- synthetase A (GrsA) in the gramicidin S-producer Aneurinibacillus migulanus ATCC 9999, providing an alternative scaffold to develop novel A-domain inhibitors. Keywords: adenylation domain inhibitor; gramicidin S synthetase; natural product; nonribosomal peptide; nonribosomal peptide synthetase
- mycobactin from Mycobacterium tuberculosis [6]. 5′-O-Sulfamoyladenosine (AMS), a bioisosteric analog of an AMP intermediate, has been used as a non-hydrolysable scaffold for developing A-domain inhibitors. Moreover, 5′-O-[N-(salicyl)sulfamoyl]adenosine (Sal-AMS) and its derivatives show potent inhibitory
Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles
Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36
- 100 nm, exhibit various benefits, such as tailoring the scaffold of the catalyst, the recyclability of the nanocompounds, as well as the elevated catalytic activity offered. These benefits stem from their high surface area, that provides more active sites for the reactants to absorb into and collide
Discovery of unguisin J, a new cyclic peptide from Aspergillus heteromorphus CBS 117.55, and phylogeny-based bioinformatic analysis of UngA NRPS domains
Beilstein J. Org. Chem. 2024, 20, 321–330, doi:10.3762/bjoc.20.32
- genome was initially screened using fungiSMASH to identify scaffolds/contigs encoding secondary metabolites. Scaffold MSFL01000005.1 was further investigated using FGENESH [17] to further refine gene boundaries, introns, and resulting protein sequence (Table S1, Supporting Information File 1
Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments
Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30
- precursors inherently limits the applicability of these reactions to the synthesis of π-CPCs containing linearly-fused benzene rings in their core scaffold (i.e., at least an anthracene pattern), or to the deprotection of peripheral benzene rings. To reach a wider variety of structures, novel synthetic
- corresponding bis(thiophenyl) thioether, which then underwent successive bromination and iodination to give intermediate 18. Next, a two-fold Suzuki–Miyaura cross-coupling occurring chemoselectively on the iodinated positions allowed the symmetric extension of the hydrocarbon scaffold, with the insertion of two
- thermal- and photostability by the choice of oxygen as heteroatom, while keeping the possibility to trigger chalcogen extrusion via a radically different mechanistic route, as a result of the injection of electrons. Here, the presence of the imide functions appended to the naphthyl scaffold is crucial
Photochromic derivatives of indigo: historical overview of development, challenges and applications
Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23
- ]. As an alternative to the chemical synthesis of indigo, environmentally friendly biological approaches towards constructing the indigo scaffold are also being developed for nearly a century [5][6][7][8]. The biosynthetic methods include production of indigo by microorganisms and enzymatic synthesis
- (DPT). Taking together, the main indigo scaffold is not photochromic. However, substitution of the hydrogen atom in the NH groups of indigo can change the photochemical behavior significantly. Photochromic indigo derivatives In 1954, the first photochromic indigo derivative, namely N,N'-diacetylindigo
- isomerization of the indigo derivatives that led to the disassembly of well-shaped vesicles and formation of irregular aggregates. The thermal Z–E relaxation of the indigo scaffold provided the restoration of the vesicle structure. The system contributed to the development of red-light-controllable biomedical
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