Pseudallenes A and B, new sulfur-containing ovalicin sesquiterpenoid derivatives with antimicrobial activity from the deep-sea cold seep sediment-derived fungus Pseudallescheria boydii CS-793

• Zhen Ying,
• Xiao-Ming Li,
• Sui-Qun Yang,
• Hong-Lei Li,
• Xin Li,
• Bin-Gui Wang and
• Ling-Hong Meng

Beilstein J. Org. Chem. 2024, 20, 470–478, doi:10.3762/bjoc.20.42

• pathway, the bergamotene sesquiterpenoid (I) is presumed to be a key intermediate cyclized from farnesyl diphosphate (FPP) via nerolidyl diphosphate (NPP) followed by a bisabolyl cation [14]. Subsequent oxidation (bishydroxylation) catalyzed by some oxygenase such as P450 would afford the key intermediate

• II, which could be transferred to III by cyclization and epoxidation. Oxidation and methylation of intermediate III would produce IV. Compounds 1–4 could be obtained by nucleophilic attack at C-8 with the hydroxy or thiol group from IV via intermediate V, followed by oxidation and cyclization

• (pathway b), while nucleophilic attack at C-14 of intermediate IV by a chloride could generate compound 5 (pathway a). In addition, compound 5 might also be derived from intermediate IV by cleavage of the ester bond at C-2 to form the intermediate VI [15], followed by chlorination (pathway c). Compounds 1

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• corresponding 2,2-difluoroketones [15]. In related kinetic studies concerning the electrophilic 2-fluorination of 1,3-diketones with Selectfluor [16][17], we demonstrated that the rate-determining step for difluorination was enolization of the intermediate 2-fluoro-1,3-diketone. Monofluorination of 1,3

(E,Z)-1,1,1,4,4,4-Hexafluorobut-2-enes: hydrofluoroolefins halogenation/dehydrohalogenation cascade to reach new fluorinated allene

• Nataliia V. Kirij,
• Andrey A. Filatov,
• Yurii L. Yagupolskii,
• Sheng Peng and
• Lee Sprague

Beilstein J. Org. Chem. 2024, 20, 452–459, doi:10.3762/bjoc.20.40

• bond in butenes 1a,b have been presented in the literature. First, Crimmin et al. investigated the reaction of an aluminum(I) complex with fluoroalkenes. Unlike all the presented fluoroolefins, the reaction of the Al(I) complex with (Z)-butene 1b did not allow isolating the intermediate organoaluminum

Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• mycobactin from Mycobacterium tuberculosis [6]. 5′-O-Sulfamoyladenosine (AMS), a bioisosteric analog of an AMP intermediate, has been used as a non-hydrolysable scaffold for developing A-domain inhibitors. Moreover, 5′-O-[N-(salicyl)sulfamoyl]adenosine (Sal-AMS) and its derivatives show potent inhibitory

Mono or double Pd-catalyzed C–H bond functionalization for the annulative π-extension of 1,8-dibromonaphthalene: a one pot access to fluoranthene derivatives

• Nahed Ketata,
• Linhao Liu,
• Ridha Ben Salem and
• Henri Doucet

Beilstein J. Org. Chem. 2024, 20, 427–435, doi:10.3762/bjoc.20.37

• cycle involves the oxidative addition of 1,8-dibromonaphthalene. Then, a concerted metalation–deprotonation of the arene, which usually occurs at the ortho-position of an activating group such as a fluorine or a chlorine atom, followed by reductive elimination, gives the corresponding intermediate 1

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• step involves the activation of the carbonyl group by the catalyst. This renders it susceptible to a nucleophilic attack from the indole, leading to the formation of the intermediate product. Subsequently, a second nucleophilic attack occurs by another molecule of indole, yielding the final BIM product

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• (PC•–) (Scheme 4A). This strong reducing agent mediates the one-electron reduction of the NHPI ester 10, forming radical anion intermediate 11. Fragmentation of 11 via N–O bond homolysis and decarboxylation forms the key tertiary radical 12 with concomitant formation of phthalimidyl anion (–Nphth) and

• CO2. Radical 12 undergoes intermolecular addition to the olefin acceptor 13 to form radical intermediate 14. Finally, under reductive conditions radical 14 can undergo hydrogen atom transfer (HAT) or sequential electron transfer and proton transfer (ET/PT) to form the conjugate addition product 15

• deprotonation of 21 to provide radical intermediate 22 [45]. Finally, the iridium excited state (*IrIII) formed under blue light irradiation oxidizes 22 to form product 23 and the corresponding reduced IrII complex, beginning a new photocatalytic cycle. Photocatalytic oxidative quenching mechanism The

Facile approach to N,O,S-heteropentacycles via condensation of sterically crowded 3H-phenoxazin-3-one with ortho-substituted anilines

• Eugeny Ivakhnenko,
• Vasily Malay,
• Pavel Knyazev,
• Nikita Merezhko,
• Nadezhda Makarova,
• Oleg Demidov,
• Gennady Borodkin,
• Andrey Starikov and
• Vladimir Minkin

Beilstein J. Org. Chem. 2024, 20, 336–345, doi:10.3762/bjoc.20.34

• condensation of 3H-phenoxazin-3-one (1) with various o-aminophenols (in refluxing DMF for 8–10 h), upon formation of the corresponding imine intermediate, affords benzo[5,6][1,4]oxazino[2,3-b]phenoxazines derivatives 10a,b (triphenodioxazines). As shown in the present work, this reaction can also be performed

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• the organic product along with inorganic species [41][42][43][44]. Over the years, many efforts were thus devoted to the synthesis of thiepine derivatives with increased thermal stability, with the aim to disfavor the formation of the transient thianorcaradiene intermediate as a way to prevent the

• corresponding bis(thiophenyl) thioether, which then underwent successive bromination and iodination to give intermediate 18. Next, a two-fold Suzuki–Miyaura cross-coupling occurring chemoselectively on the iodinated positions allowed the symmetric extension of the hydrocarbon scaffold, with the insertion of two

• dinaphthooxepine bisimides [66], which are analogues of the dinaphthothiepine bisimides presented above with an oxygen atom substituting the sulfur atom (Scheme 9). Their synthesis was successfully achieved in two steps from the known intermediate 5,5’-linked 4-chloro-1,8-naphthalic anhydride dimer 11, already

Synthesis of spiropyridazine-benzosultams by the [4 + 2] annulation reaction of 3-substituted benzoisothiazole 1,1-dioxides with 1,2-diaza-1,3-dienes

• Wenqing Hao,
• Long Wang,
• Jinlei Zhang,
• Dawei Teng and
• Guorui Cao

Beilstein J. Org. Chem. 2024, 20, 280–286, doi:10.3762/bjoc.20.29

• 4aa [35] was isolated in 62% yield (Scheme 4). On the basis of the transformation of 3aa to 4aa, a tentative reaction mechanism is proposed. As shown in Scheme 5, the spiropyridazine-benzosultam 3aa was firstly oxidized to intermediate A. Next, an aziridine was formed with the hydrolysis of the amide

• bond under basic conditions. Finally, the ring expansion led to intermediate C which was then hydrolyzed to 4aa. Conclusion In conclusion, we have developed a [4 + 2] annulation reaction of 3-substituted benzo[d]isothiazole 1,1-dioxides with 1,2-diaza-1,3-dienes for the efficient preparation of

Unveiling the regioselectivity of rhodium(I)-catalyzed [2 + 2 + 2] cycloaddition reactions for open-cage C₇₀ production

• Cristina Castanyer,
• Anna Pla-Quintana,
• Anna Roglans,
• Albert Artigas and
• Miquel Solà

Beilstein J. Org. Chem. 2024, 20, 272–279, doi:10.3762/bjoc.20.28

• was also observed in the HPLC chromatogram, whose UV–vis has a pattern that is similar to a previously reported α-adduct [49]. We reasoned that this minor compound was the cyclohexadiene-fused C70 intermediate, analogous to cyclohexadiene-fused C60 I (see Scheme 1), which had not completely evolved

• into the corresponding bis(fulleroid) product after 4 h of reaction (Figure S1 in Supporting Information File 1). Importantly, the observation of this intermediate represents an experimental proof of the proposed reaction mechanism. Confirmation that only one unit of 1a reacted with C70 in the reaction

• between the rhodacyclopentadiene moiety and a [6,6]-α-bond of C70, yielding rhodabicyclo[3.2.0]heptadiene intermediate α-INT 3. This step has a cost of 9.5 kcal·mol−1. Alternatively, a [6,6]-β-bond of C70 can be involved in this step (grey line) to produce β-INT 3, albeit with a slightly higher Gibbs

Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• potential than 1 (Figure 2C, grey line); thus, it was subsequently oxidized on the anode to afford the halonium ion (Cl+), which can react with 1 to form unstable N−Cl species (B) in situ (Figure 4). Although we cannot detect the chlorinated intermediate of 1, electrolysis of N-propylcarbamate derivative

Catalytic multi-step domino and one-pot reactions

• Svetlana B. Tsogoeva

Beilstein J. Org. Chem. 2024, 20, 254–256, doi:10.3762/bjoc.20.25

• because they are time-saving, waste-reducing, and atom efficient [1][2][3][4][5][6]. These efficient and straightforward synthetic methods make the isolation and purification of intermediate products after each reaction step superfluous, thereby drastically reducing the number of workup and purification

• facile stereoselective tandem reaction based on the asymmetric conjugate addition of dialkylzinc reagents to unsaturated acylimidazoles, followed by trapping of the intermediate zinc enolate with carbocations [12]. A practical one-pot synthesis of fluorescent pyrazolo[3,4-b]pyridin-6-ones by reacting 5

Substitution reactions in the acenaphthene analog of quino[7,8-h]quinoline and an unusual synthesis of the corresponding acenaphthylenes by tele-elimination

• Ekaterina V. Kolupaeva,
• Narek A. Dzhangiryan,
• Alexander F. Pozharskii,
• Oleg P. Demidov and
• Valery A. Ozeryanskii

Beilstein J. Org. Chem. 2024, 20, 243–253, doi:10.3762/bjoc.20.24

• assigned the structure of the intermediate mononitro derivative 11 (Supporting Information File 1, Figure S2). Hoping to avoid formation of the “mononitro derivative” impurity, we increased the reaction time, the amount and composition of the nitrating mixture, and the temperature, but according to the

• starting acenaphthene 15. It is not possible to fix any intermediate products in this unusual transformation proceeding as tele-elimination with simultaneous nucleophilic substitution. Thus, carrying out the reaction under milder conditions (130 °C, 6 h) leads only to a mixture of 15 and 16 in a 45:55

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• -phosphite intermediate was then oxidized with hydrogen peroxide to yield dibenzyl α-phosphate 6, achieving an overall yield of 89% for these two steps. Removal of the 2-(phenylsulfonyl)ethanol protecting group in compound 6 was successfully achieved through treatment with 1,8-diazabicyclo[5.4.0]undec-7-ene

• , leading to the formation of the α-phosphoryl GlcNAc-MurNAc-monopeptide derivative. Subsequently, coupling this intermediate with tetrapeptide, TFA·H-ʟ-Ala-γ-ᴅ-Glu(OMe)-ʟ-Lys(COCF3)-ᴅ-Ala-ᴅ-Ala-OMe under mild conditions resulted in the synthesis of dibenzyl α-phosphoryl GlcNAc-MurNAc-pentapeptide 7 (see

Copper-catalyzed multicomponent reaction of β-trifluoromethyl β-diazo esters enabling the synthesis of β-trifluoromethyl N,N-diacyl-β-amino esters

• Youlong Du,
• Haibo Mei,
• Ata Makarem,
• Ramin Javahershenas,
• Vadim A. Soloshonok and
• Jianlin Han

Beilstein J. Org. Chem. 2024, 20, 212–219, doi:10.3762/bjoc.20.21

•  3b). The expected three-component tandem reaction did not occur, and the target 4a was not observed with almost all of the starting amine 1a remaining. This result indicates the reaction proceeds through the diazo intermediate. According to the above experimental results and literature reports [39

• ][40][41][58][59], a possible mechanism for this Cu-catalyzed reaction of β-trifluoromethyl β-amino esters was proposed in Scheme 4. Initially, β-trifluoromethyl β-amino ester 1a reacts with tert-butyl nitrite to form trifluoromethylated β-carbonyl diazo intermediate A. Then, the diazo intermediate A

• reacts with the copper catalyst generating the Cu-carbene intermediate B, which undergoes nucleophilic attack by acetonitrile to form the intermediate C. Subsequently, nucleophilic addition of benzoic acid to intermediate C affords the acetimidic anhydride D with the release of CuI catalyst for the next

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• diverse dibenzodiazepinones via a copper-catalyzed C–N bond coupling between 2-halobenzoates and o-phenylenediamines leading to a key intermediate that undergoes an intramolecular N-acylation to afford the corresponding dibenzodiazepinone structure in high yields (Scheme 1b) [14]. Another innovative

• surrogate through the in situ formation of an o-(2-bromophenyl)aminoaniline intermediate (Scheme 1d). It should be noted these target compounds have been of great interest to our group and in 2015 we reported a proposed novel methodology for the synthesis of dibenzodiazepines [18], however, upon later

• was disclosed that DMF, the reaction solvent, could act as a potential carbon monoxide surrogate under certain circumstances, notably, in metal-catalyzed aminocarbonylation procedures [19][20]. Unfortunately, no DBDAP was obtained and we only observed the formation of intermediate 3a in 25% yield

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• versus α:β = 13:1 for 2). One could speculate that a more nucleophilic carbonyl oxygen of the chloroacetyl group at O-9 in sialyl donor 2 might participate in a stabilization of the intermediate glycosyl cation from the α-side (as we discussed earlier [52][53]) diminishing the α/β ratio. Conversely, at

Synthesis of the 3’-O-sulfated TF antigen with a TEG-N₃ linker for glycodendrimersomes preparation to study lectin binding

• Mark Reihill,
• Hanyue Ma,
• Dennis Bengtsson and
• Stefan Oscarson

Beilstein J. Org. Chem. 2024, 20, 173–180, doi:10.3762/bjoc.20.17

• following acetylation without purification of the intermediate, why the synthesis is high-yielding (20% overall yield) and easily scalable (9 g of protected disaccharide 7 and 1 gram of target 2 were synthesized). Experimental General methods All reactions containing air- and moisture-sensitive reagents

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• benzyl moiety on the substrate resulted in tandem Friedel–Crafts reactions to form the 1-aryltetraline products. These compounds share a close analogy to the cyclolignan natural products. Experimental observations and a DFT study support the involvement of an aldehyde intermediate during the Friedel

• ], in the presence of a nucleophilic species. Recently, we applied this idea to the rearrangement of 1-indanyl hydroperoxides into 2-substituted chromane derivatives, involving the nucleophilic allylation of the rearranged oxocarbenium intermediate (Scheme 1b) [12][13]. Furthermore, it is interesting to

• involving a first Friedel–Crafts reaction of aldehyde 3 (oxocarbenium intermediate 7' is also a good candidate for this reaction, see next paragraph) with 1,3,5-trimethoxybenzene (5), leading to intermediate 8 (Scheme 3). This last compound was too reactive to be isolated, presumably leading to a quinone

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• probable mechanism is proposed. As shown in Scheme 5, ethyl bromoacetate (2a) undergoes attack by the dipolar aprotic solvent DMSO to afford the intermediate A. This intermediate then reacts with the bromine anion to give intermediate B. Dimethylsulfonium bromide or dimethyl thioether/molecular bromine

• intermediate C is then generated, followed by the combination of the bromine anion with intermediate B. Finally, selective C5 bromination is accomplished via aromatic electrophilic substitution of 1a with intermediate C promoted by the copper catalyst to afford the desired product 3aa. Conclusion In summary

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• -tetracyano-p-quinodimethane (TCNQ), results in the formation of a zwitterionic intermediate, wherein the negative charge evolves into a stabilized carbanion (dicyanomethide anion). Subsequently, the ring closure of the zwitterionic intermediate generates the corresponding cyclobutene intermediate. Finally

• intermediate. Subsequently, following the production of an oxide ion through the ring-opening reaction of the 2,5-dihydrofuran ring, the oxide ion attacks another TCNEO molecule. This sequence culminates in the elimination of the tetracyanodioxetane moiety (either as dioxetane or carbonyl dicyanide molecules

• reactions. In these reactions, the nucleophilic attack of the alkyne carbon of 1 occurs at the C(1) carbon of 6. When the formal [2 + 2] cycloaddition, as delineated in path A, occurs for the zwitterionic intermediate featuring the 1,1,3-tricyanoallyl anion obtained through the nucleophilic attack

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• , Umemoto’s reagent undergoes a homolysis process to generate the trifluoromethyl radical species. The trifluoromethyl radical is trapped by the terminal alkene and forms a relayed radical intermediate 6, which is intercepted by the indole ring realizing an intramolecular cyclization (6-exo-trig). The newly

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• , even under anaerobic conditions. Investigations of the mechanism of the DNA damage revealed the involvement of intermediate hydroxyl radicals and C-centered radicals. Under aerobic conditions, singlet oxygen only contributes to marginal extent to the DNA damage. Keywords: DNA intercalators

• species (ROS), such peroxyl, alkoxy and hydroxyl radicals, or carbon-centered radicals, which subsequently induce DNA strand cleavage. In the type-II mechanism, a triplet-excited photosensitizer reacts with molecular oxygen to give highly reactive singlet oxygen, 1O2, as reactive intermediate, which in

• radicals 4 and 5, namely by addition of the radical or by hydrogen abstraction at the methylene group of the ethyl substituent (Scheme 4). Subsequently, the intermediate radicals 4 and 5 induce DNA-strand breaks initiated by hydrogen abstraction reactions at the ribose residues [78][87]. Most notably

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• -Cs, the stabilization of this complex is significantly more important for the radical cation (around 20 kcal mol−1) than for the neutral complex (less than 10 kcal mol−1). To reach intermediate I-1, the singly-bonded dimer, a transition state TS-1 has to be overcome. The barrier for the radical

• cation is much smaller (6–7 kcal mol−1) than for the neutral dimer (28.8 kcal mol−1), so we confirm that the process is activated for the cation. The interdimer C···C distance is smaller than 2 Å for the radical cation and for the neutral species. Once intermediate I-1 is formed, the interdimer C–C

• distance is around 1.60–1.70 Å. Formation of the second C–C bond to yield dimer 1-Cs requires to overcome a second transition state TS-2 with energy barriers that range between 10–13 kcal mol−1 from the immediate intermediate depending on the profile. The interdimer C···C distance of the forming bond is