Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• hydroamination reaction products via a proton-coupled electron transfer (PCET) mechanism. Cyclic voltammetry (CV) analysis indicated that the chemoselectivity was derived from the size of the hydrogen bond complex, which consisted of the carbamate substrate and phosphate base, and could be controlled using

• of conjugate addition of a cathodically generated carbamate anion was ruled out, prompting us to consider that N-alkylation proceeded via a radical mechanism. On the other hand, the addition of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) led to the predominant formation of cyclized dimer 4 without N

• amidyl radical generation through the PCET mechanism. The above studies provided us with valuable insights into the intriguing electrochemical behavior of 1 (Figure 3). Hydrogen bond formation between 1 and the phosphate base yielded small aggregates, the interaction efficiency of which with the

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• the O atom (Figure 6b). Moreover, the data of the first systematic computational ab initio study of the molecular mechanism of the photostability of indigo [36] support these findings and additionally point out that the single proton transfer (SPT) is more favorable than the double proton transfer

• solvents and under high pressures were performed. It was found that N,N'-dibenzoylindigos underwent the thermal relaxation much more slowly than the compounds without the aromatic ring in the acyl group. The biradical mechanism (Figure 11) was found to be the preferable pathway for the thermal Z–E

• photolysis in combination with steady-state measurements [59]. It was found that the E–Z photoisomerization of 9a, 9d, 9g, 9h occurred through a singlet mechanism upon direct excitation. However, the triplet state could be achieved by a sensitized reaction. At room temperature, a transient species that could

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• study the mechanism of action of antimicrobial peptides that kill bacteria through binding to these polyprenyls [21][28][29][30][31][32][33][34]. Lipid II has been of particular interest, and during our synthesis of multiple different lipid II analogues, we have developed several optimizations, which we

Copper-catalyzed multicomponent reaction of β-trifluoromethyl β-diazo esters enabling the synthesis of β-trifluoromethyl N,N-diacyl-β-amino esters

• Youlong Du,
• Haibo Mei,
• Ata Makarem,
• Ramin Javahershenas,
• Vadim A. Soloshonok and
• Jianlin Han

Beilstein J. Org. Chem. 2024, 20, 212–219, doi:10.3762/bjoc.20.21

• electron-withdrawing groups (4s and 4t) could generate the target products with moderate to good yields (46–71%). We also tried another nitrile substrate, such as cyclopropyl acetonitrile, which yielded only very small amounts of the expected product (4u). To gain insight into the mechanism of this

• ][40][41][58][59], a possible mechanism for this Cu-catalyzed reaction of β-trifluoromethyl β-amino esters was proposed in Scheme 4. Initially, β-trifluoromethyl β-amino ester 1a reacts with tert-butyl nitrite to form trifluoromethylated β-carbonyl diazo intermediate A. Then, the diazo intermediate A

• . Control experiments. Proposed reaction mechanism. Scale-up synthesis. Optimization of reaction conditions.a Supporting Information Supporting Information File 8: Experimental details and spectral data. Funding We gratefully acknowledge the financial support from the National Natural Science Foundation

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• mechanism of the CPA-catalyzed transfer hydrogenation reaction was proposed (Figure 2). The activation of 3,3-difluoro-substituted 3H-indole 1 by protonation through the Brønsted acid generates the iminium A. Subsequent hydrogen transfer from the Hantzsch ester gives the chiral amine 2 and pyridinium salt B

• spectroscopy and the ee values were determined by chiral HPLC. Structures of bioactive fluorinated indole derivatives. Proposed mechanism for the transfer hydrogenation reaction. Synthesis of chiral indolines via asymmetric reduction. Substrate scope of 3,3-difluoro-3H-indoles. Experiment at 2 mmol scale

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• products 3e and 3g contained some unidentified impurities that were impossible to remove via chromatography). Scope of the synthesis of DBDAPs. Please note that product 4g contained some unidentified impurities that were impossible to remove via chromatography. Proposed mechanism. Explorative study of the

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• structure and the reaction mechanism are the keys to understanding chemical reactivity and selectivity [65][66][67]. In the area of carbohydrate chemistry, a lot of efforts are devoted to finding relationships between the fine details of molecular structures of both glycosylation partners (glycosyl donor

• the SN1-like mechanism to a more SN2-like mechanism occurs only (or mainly) for sialyl donor 2. Although this hypothesis can explain why the glycosylation with sialyl donor 2 exhibits substantial concentration dependence, it does not allow one even to guess why such SN1-to-SN2 cross-over did not occur

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• photooxygenation, Hock rearrangement and Friedel–Crafts reaction, which is supposed to proceed through aldehyde 3 (see further discussion below on the reaction mechanism). To complete this exploratory work, we envisaged to add an external aromatic nucleophile to the reaction mixture, namely 1,3,5-trimethoxybenzene

• was not formed, but the formation of aldehyde 3 could be observed during TLC monitoring. Furthermore, engaging previous dihydronaphthalene 4 in a Friedel–Crafts reaction with 5 in the presence of BF3·OEt2 and MgSO4 did not afford product 6. These observations are in agreement with a mechanism

• involvement of oxocarbenium species 7 and 7’ in a Friedel–Crafts reaction with 5, to explain the formation of 6 through an interrupted Hock cleavage mechanism. Confronting the yield of this transformation (86%) and the fact that only 7’, originating from 2’, could be an intermediate towards 6 in this

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• gram-scale preparation was carried out using 1a, that afforded the desired product in 96% yield (Scheme 4, reaction 4). To gain more insight into the reaction mechanism, several control experiments were carried out (Scheme 5). On one hand, the failure of substrates 10–15 to participate in the reaction

• probable mechanism is proposed. As shown in Scheme 5, ethyl bromoacetate (2a) undergoes attack by the dipolar aprotic solvent DMSO to afford the intermediate A. This intermediate then reacts with the bromine anion to give intermediate B. Dimethylsulfonium bromide or dimethyl thioether/molecular bromine

• . Reaction conditions: 1a (0.2 mmol), 2 (0.8 mmol), Cu(OAc)2·H2O (20 mol %), K2CO3 (0.2 mmol), DMSO (1.0 mL), stirred under air at 100 ºC for 12 h. Isolated yield. Further substrate scope investigations and gram-scale application. Control experiments and proposed mechanism. Optimization of the reaction

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• -order kinetics, indicating a bimolecular process. Furthermore, their findings elucidated a compelling linear free-energy relationship between the rate constants and electronic characteristics of the para-substituents of the DCV electrophiles, implying a dipolar, zwitterionic mechanism. The researchers

• generalizing the elucidated reaction mechanism to other [2 + 2] CA–RE reactions involving TCNE and TCNQ as electrophiles might be difficult. They emphasized the significance of considering a pre-equilibrium state of the charge-transfer complexes between the alkynes and alkenes and mentioned that the

• emission increases when they are excited at 420 nm, resulting in white-light emission. The underlying mechanism governing these luminescence properties remains unknown. It has been established that 75 does not exhibit luminescence in its solid-state form, which is attributed to the quenching effects

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• radicals. This method allows the efficient synthesis of various indole derivatives without the need of photocatalysts or transition-metal catalysts. Mechanism experiments indicate that the process involves a radical chain process initiated by the homolysis of Umemoto's reagent. This straightforward method

• precedent work [32] (see Supporting Information File 1), and the calculated quantum yield was 2.2, which revealed that one photon generates more than one product molecule. Based on preliminary experiments and previous reports [33][34], we propose a plausible mechanism (Scheme 4). Upon light irradiation

• derivatives. UV–vis spectra of substrates; [1a] 0.33 M, [2a] 0.11 M. Selected works for the construction of dihydropyrido[1,2-a]indolones and current methodology. Substrate scope of the cascade reaction. Radical trapping experiment. Plausible reaction mechanism. Optimization of reaction conditions.a

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• , even under anaerobic conditions. Investigations of the mechanism of the DNA damage revealed the involvement of intermediate hydroxyl radicals and C-centered radicals. Under aerobic conditions, singlet oxygen only contributes to marginal extent to the DNA damage. Keywords: DNA intercalators

• cancer [39], and bacterial, fungal, parasitic and viral infections [40][41]. In general, PDT operates on the basis of a photosensitizer, which generates reactive intermediates upon irradiation [42][43][44][45]. Hence, in the type-I mechanism the photosensitizer induces the formation of reactive oxygen

• species (ROS), such peroxyl, alkoxy and hydroxyl radicals, or carbon-centered radicals, which subsequently induce DNA strand cleavage. In the type-II mechanism, a triplet-excited photosensitizer reacts with molecular oxygen to give highly reactive singlet oxygen, 1O2, as reactive intermediate, which in

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• and reversible process named phase 1. We find that the barriers for the radical cation mechanism are significantly lower than those found for the neutral pathway. The peapod is mainly providing one-dimensional confinement for the reaction to take place in a more efficient way. Car–Parrinello

• -dimensional space within the CNT and compared the results with those for the same reaction in the gas phase. We assumed that the cation radical mechanism takes place, that is, the ionized CNT generates a radical cation C60•+ that reacts with a C60 molecule to yield different C120•+ dimers. The energies for

• Waals complex), so the two profiles are not that different, according to the energetic spam model by Kozuch and Shaik [20]. In any case, the mechanism via radical cation is the most favorable, both kinetically and thermodynamically. For dimer 1-D2h•+, the energy profile up to I-1 is very similar to that

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• ) at 23 °C. Reaction of 1 with various Michael acceptors (EWG = electron-withdrawing group) forming the zwitterions 2a–i; the reactions were performed in dichloromethane at room temperature. Proposed mechanism for intramolecular proton transfer in zwitterion formation with Michael acceptors bearing a

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• the structure of the prepared compounds. To explain the outcome of the tandem reaction of 3,3-diaminoacrylonitriles to heterocyclic azides, a tentative mechanism for the formation of 1,2,3-triazoles 3 from acrylonitriles 1 and azides 2 is shown in Scheme 3. Firstly, treatment with a base, leads to

• (method A)a; 1 (0.5 mmol), 2 (0.5 mmol), NaOH (0.5 mmol), EtOH (2 mL), 0 °C → rt, 30 min (method B)b. Proposed mechanism for the formation of triazoles 3. Optimization of the reaction of amidine 1a with 6-azidopyrimidine-2,4-dione 2a.a Cytotoxicity index (IC50 ± SE) in µM of the studied compounds on human

Synthesis of N-acyl carbazoles, phenoxazines and acridines from cyclic diaryliodonium salts

• Nils Clamor,
• Mattis Damrath,
• Thomas J. Kuczmera,
• Daniel Duvinage and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2024, 20, 12–16, doi:10.3762/bjoc.20.2

• the mechanism of opening of the iodane, we used 2,2'-diiodobiphenyl as the starting material, leading to no formation of 2a. Thus, we confirmed that our system does not activate 2,2'-diiodobiphenyl. Therefore, we applied the conditions described in Table 1, entry 7 for further investigation. With the

Identification of the p-coumaric acid biosynthetic gene cluster in Kutzneria albida: insights into the diazotization-dependent deamination pathway

• Seiji Kawai,
• Akito Yamada,
• Yohei Katsuyama and
• Yasuo Ohnishi

Beilstein J. Org. Chem. 2024, 20, 1–11, doi:10.3762/bjoc.20.1

• Information File 1). Because AvaA1 was shown not to recognize AvaA2, but to recognize AvaA3 in vitro, the homologs of these proteins (CmaA1, CmaA2, and CmaA3) are expected to have the same features. The mechanism by which AvaA1 and CmaA1 distinguish between two different ACPs (AvaA2 and AvaA3 for AvaA1 and

• strongly support our previous observation that AvaA7 showed a preference for NADPH as a cofactor [13][29]. In addition, CmaA6 could be an attractive target for understanding the reaction mechanism of ATP-dependent diazotase. CmaA6 could also be an ancestor for generating useful biocatalysts to synthesize

• -coumaric acid via diazotization-dependent deamination. The diazotase CmaA6 had a high catalytic activity, which enabled us to determine the kinetics of the denitrification reaction catalyzed by AvaA7. Furthermore, careful comparison between ava and cma clusters provided insights into (i) the mechanism of

Studying specificity in protein–glycosaminoglycan recognition with umbrella sampling

• Mateusz Marcisz,
• Sebastian Anila,
• Margrethe Gaardløs,
• Martin Zacharias and
• Sergey A. Samsonov

Beilstein J. Org. Chem. 2023, 19, 1933–1946, doi:10.3762/bjoc.19.144

• be a potential mechanism of GAG particular sequence recognition by proteins. Keywords: glycosaminoglycan; molecular docking; protein–glycosaminoglycan interaction specificity; RS-REMD; umbrella sampling; Introduction Glycosaminoglycans (GAGs) are long linear periodic anionic polydisperse

Construction of diazepine-containing spiroindolines via annulation reaction of α-halogenated N-acylhydrazones and isatin-derived MBH carbonates

• Xing Liu,
• Wenjing Shi,
• Jing Sun and
• Chao-Guo Yan

Beilstein J. Org. Chem. 2023, 19, 1923–1932, doi:10.3762/bjoc.19.143

• and proceeds through a by base-promoted annulation reaction of α-halogenated N-acylhydrazones and isatin-derived MBH carbonates. The reaction mechanism of this formal [4 + 3] annulation includes the in situ generated allylic ylide, nucleophilic substitution, Michael additon, and elimination processes

• cyclic 1,2-diazepine ring and the methylene unit is connected to the 3-positon of the oxindole moiety. On the basis of the current results and previous works [54][55][56][57][58][59][60][61], a reaction mechanism for the formation of the spiro[indoline-3,5'-[1,2]diazepines] has been proposed and is

• elimination of a proton and the Lewis base. Obviously, the spiro compounds 5 and 7 are formed by a similar reaction mechanism. Additionally, the method was applied to a gram-scale reaction of α-halogenated p-toluenesulfonylhydrazone 6c and MBH nitrile of isatin 2c under the standard conditions (Scheme 6). The

Beyond n-dopants for organic semiconductors: use of bibenzo[d]imidazoles in UV-promoted dehalogenation reactions of organic halides

• Kan Tang,
• Megan R. Brown,
• Chad Risko,
• Melissa K. Gish,
• Garry Rumbles,
• Phuc H. Pham,
• Oana R. Luca,
• Stephen Barlow and
• Seth R. Marder

Beilstein J. Org. Chem. 2023, 19, 1912–1922, doi:10.3762/bjoc.19.142

• aryl halides (RX) and discuss the scope and possible mechanism of these reactions. Results and Discussion Reaction of (Y-DMBI)2 with benzyl bromide We began our investigations of dehalogenation reactions using benzyl bromide (BnBr, 1a), which has a reduction peak potential (Epc) of −1.6 V vs FeCp2+/0

• electropositive metals and may be of use in more elaborate chemical transformations. Mechanism of dark reactions Doping of organic semiconductors by (Y-DMBI)2 dimers [18][39] or by various dimers formed by 18-electron sandwich compounds [18][40][41], as well as redox reactions of other dimers formed by organic

• ” mechanism, the first step is an ET reaction, resulting in the formation of D2•+, which subsequently cleaves to form D+ and D•, which is much more readily oxidized than the dimer itself and thus participates in a second fast ET (Scheme 2). In the present case, knowledge of the operative mechanism(s) is

Anion–π catalysis on carbon allotropes

• M. Ángeles Gutiérrez López,
• Mei-Ling Tan,
• Giacomo Renno,
• Augustina Jozeliūnaitė,
• J. Jonathan Nué-Martinez,
• Javier Lopez-Andarias,
• Naomi Sakai and
• Stefan Matile

Beilstein J. Org. Chem. 2023, 19, 1881–1894, doi:10.3762/bjoc.19.140

• formation (Figure 1C) [12]. This intriguing mechanism of catalysis should be further intensified on single-walled carbon nanotubes 2 (SWCNTs, Figure 1D) and multi-walled carbon nanotubes 3 (MWCNTs, Figure 1E) [13]. Multiple substrate/transition-state binding should reduce particularly in-plane polarization

• electric fields changes the mechanism of anion–π catalysis on carbon allotropes [44]. Rather than an anionic transition state creating its own catalyst, the OEEF polarizes the carbon allotrope in advance. The resulting macrodipoles then should enable strong anion–π and cation–π interactions depending on

Aromatic systems with two and three pyridine-2,6-dicarbazolyl-3,5-dicarbonitrile fragments as electron-transporting organic semiconductors exhibiting long-lived emissions

• Karolis Leitonas,
• Brigita Vigante,
• Dmytro Volyniuk,
• Audrius Bucinskas,
• Pavels Dimitrijevs,
• Sindija Lapcinska,
• Pavel Arsenyan and
• Juozas Vidas Grazulevicius

Beilstein J. Org. Chem. 2023, 19, 1867–1880, doi:10.3762/bjoc.19.139

• be soluble in common organic solvents and to exhibit non-structured emission peaks in the green-yellow color region of the spectrum. The PL intensity of the compounds in solution was enhanced after deoxygenation, indicating the presence of triplet harvesting by the mechanism of thermally activated

Controlling the reactivity of La@C₈₂ by reduction: reaction of the La@C₈₂ anion with alkyl halide with high regioselectivity

• Yutaka Maeda,
• Saeka Akita,
• Mitsuaki Suzuki,
• Michio Yamada,
• Takeshi Akasaka,
• Kaoru Kobayashi and
• Shigeru Nagase

Beilstein J. Org. Chem. 2023, 19, 1858–1866, doi:10.3762/bjoc.19.138

• produced chemically or electrochemically. C602− is a strong electron donor and potential nucleophile that reacts with electrophiles [6][7][8][9][10][11]. The mechanism for the reaction of C602− with alkyl halides has been studied in detail by Fukuzumi et al., who found that the reaction occurs via electron

• involvement of azomethine ylide; however, the detailed mechanism has not been elucidated. In this article, we describe the thermal reaction of the La@C2v-C82 anion, activated by one-electron reduction, with benzyl bromide derivatives. Results and Discussion The La@C2v-C82 anion [20] was prepared by chemical

• 3a was confirmed by the SC-XRD analysis, which showed that the addition site of addendum was indeed at the C10 position of La@C2v-C82 (Figure 5). The La@C2v-C82 anion can act as an electron donor and a nucleophile. To confirm the reaction mechanism, charge density and the p-orbital axis vector (POAV

Substituent-controlled construction of A₄B₂-hexaphyrins and A₃B-porphyrins: a mechanistic evaluation

• Seda Cinar,
• Dilek Isik Tasgin and
• Canan Unaleroglu

Beilstein J. Org. Chem. 2023, 19, 1832–1840, doi:10.3762/bjoc.19.135

• reaction mechanism of the presented method was studied on model reactions by electrospray-ionization time-of-flight (HRESI–TOF) mass spectral analysis in a timely manner. The analytical results indicated that the observed azafulvene-ended di- and tripyrrolic intermediates are responsible for the formation

Synthetic approach to 2-alkyl-4-quinolones and 2-alkyl-4-quinolone-3-carboxamides based on common β-keto amide precursors

• Yordanka Mollova-Sapundzhieva,
• Plamen Angelov,
• Danail Georgiev and
• Pavel Yanev

Beilstein J. Org. Chem. 2023, 19, 1804–1810, doi:10.3762/bjoc.19.132

• them to colonize niches and gain advantage over competitors [27][28]. Interference with this complicated communication mechanism is considered a viable strategy of combating bacterial infections and consequently a lot of research efforts have been devoted to it [29][30][31][32][33]. Many of the 4