Ligand effects, solvent cooperation, and large kinetic solvent deuterium isotope effects in gold(I)-catalyzed intramolecular alkene hydroamination

• Ruichen Lan,
• Brock Yager,
• Yoonsun Jee,
• Cynthia S. Day and
• Amanda C. Jones

Beilstein J. Org. Chem. 2024, 20, 479–496, doi:10.3762/bjoc.20.43

• both within the context of a classic gold π-activation/protodeauration mechanism and a general acid-catalyzed mechanism without intermediate gold alkyls. Keywords: alkene hydroamination; general acid catalysis; gold catalysis; isotope effect; phosphine ligand effect; solvent effect; Introduction

• as the final step of alkene hydroamination, however, an alternative mechanistic model remains elusive. There are significant similarities between gold- and acid-catalyzed alkene additions, further confounding easy conclusions about the operative mechanism. Early gold-catalyzed alkene hydroaminations

• were shown to proceed with anti-selectivity and that was used as support for gold catalysis [15], but mechanism studies of triflic acid catalysis showed a preference for anti-selectivity as well [31]. Despite similarities, control studies indicate meaningful differences in catalytic activity between

Synthesis of 2,2-difluoro-1,3-diketone and 2,2-difluoro-1,3-ketoester derivatives using fluorine gas

• Alexander S. Hampton,
• David R. W. Hodgson,
• Graham McDougald,
• Linhua Wang and
• Graham Sandford

Beilstein J. Org. Chem. 2024, 20, 460–469, doi:10.3762/bjoc.20.41

• 1,3-diphenylpropane-1,3-dione with Selectfluor. Synthesis of 2,2-difluoro-1,3-diphenylpropane-1,3-dione (3a). Proposed mechanism of the quinuclidine-mediated difluorination of 1,3-dicarbonyl substrates. Proposed mechanisms of carbonate and chloride ion-mediated difluorination of 1,3-dicarbonyl

Mono or double Pd-catalyzed C–H bond functionalization for the annulative π-extension of 1,8-dibromonaphthalene: a one pot access to fluoranthene derivatives

• Nahed Ketata,
• Linhao Liu,
• Ridha Ben Salem and
• Henri Doucet

Beilstein J. Org. Chem. 2024, 20, 427–435, doi:10.3762/bjoc.20.37

• (Table 1, entries 14–16). The decisive influence of the base for this reaction is probably due to a concerted metalation–deprotonation mechanism [27][28][29][30]. Then, the scope of the Pd-catalyzed direct arylation for access to fluoranthenes was investigated (Scheme 2). The first step of the catalytic

Green and sustainable approaches for the Friedel–Crafts reaction between aldehydes and indoles

• Periklis X. Kolagkis,
• Eirini M. Galathri and
• Christoforos G. Kokotos

Beilstein J. Org. Chem. 2024, 20, 379–426, doi:10.3762/bjoc.20.36

• cruciferous vegetables has also been showcased, due to the function of BIMs as oxidative stress inhibitors; however, the specific mechanism of action has yet to be determined [1][6]. This capability of BIMs to act as Nur77 antagonists, has resulted in their examination as potential anti-Parkinson’s disease

• related environments [8]. The mechanism of action involves the binding of BIMs to the penicillin-restricting protein PBP2a which inhibits the biosynthesis of the bacterial cell wall, making the treatment feasible without any toxicity to human cells [9][10]. The applications of BIMs have also been extended

• , rendering this protocol applicable for the chemoselective conversion of aromatic aldehydes to corresponding bis(indolyl)methanes in the presence of aliphatic aldehydes and ketones [81]. The proposed reaction mechanism for this protocol is showcased in Scheme 5. At the beginning of the reaction, the bromide

Mechanisms for radical reactions initiating from N-hydroxyphthalimide esters

• Carlos R. Azpilcueta-Nicolas and
• Jean-Philip Lumb

Beilstein J. Org. Chem. 2024, 20, 346–378, doi:10.3762/bjoc.20.35

• one of the most extensively used, owing to their structural diversity and widespread commercial availability [18][19]. Carboxylic acids 1 can generate radicals under oxidative conditions, as in classical decarboxylative halogenation reactions (Hunsdiecker reaction) that proceed via a radical mechanism

• readers to recently published review articles for additional discussion [30][31]. Discussion Mechanism under photochemical conditions In this section we provide a summary of the various conditions and activation modes employed in radical reactions of NHPI esters using visible-light irradiation. Upon

• absorption of light, an excited photocatalyst (*PC) engages in single-electron transfer (SET) with either donor (D) or acceptor (A) molecules (Scheme 3) [8][36]. Accordingly, a reductive quenching mechanism (path a) will operate when an excited photocatalyst effects the one-electron oxidation of a

Elucidating the glycan-binding specificity and structure of Cucumis melo agglutinin, a new R-type lectin

• Jon Lundstrøm,
• Emilie Gillon,
• Valérie Chazalet,
• Nicole Kerekes,
• Antonio Di Maio,
• Ten Feizi,
• Yan Liu,
• Annabelle Varrot and
• Daniel Bojar

Beilstein J. Org. Chem. 2024, 20, 306–320, doi:10.3762/bjoc.20.31

• to elucidate the molecular mechanism that would enable the specific binding of C2-substituted galactose. The natural hypothesis here would be the creation of an additional pocket in the 3D structure of the binding site, accommodating the additional substituent at C2. However, as we observed little to

• coordination with the Trp36 ring nitrogen (alpha anomer) or the Gly24 main chain oxygen (beta anomer). Conclusion Our work presents a substantial exploration of the binding specificity and mechanism of the hitherto uncharacterized lectin CMA1 from melons. The binding specificity of CMA1, C2-substituted

• equilibrium, n = 2. Structural insights into the binding mechanism of CMA1. (a, b) Overall representation of the N-terminal domain of CMA1 in complex with (a) LacNAc (Galβ1-4GlcNAc) [29] or (b) GalNAc [30]. Trefoil repeats are colored differently, and cadmium ions are represented as red spheres. (c, d) Close

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• reducing agent, O-extrusion takes place with concomitant ring contraction to give the corresponding PBI 6f, isolated in 63% yield after oxidative quenching and work-up. Contrary to photo- or thermal activation, it is important to note that the mechanism for O-extrusion involves in this case the dianion of

• dinaphthooxanorcaradiene bisimide valence isomer obtained upon electron injection and not its neutral form, as shown by UV–vis absorption and DFT studies. The mechanism of the final release of oxygen still remains unclear. This example shows that a careful molecular design allows endowing chalcogen heteropines with

Synthesis of spiropyridazine-benzosultams by the [4 + 2] annulation reaction of 3-substituted benzoisothiazole 1,1-dioxides with 1,2-diaza-1,3-dienes

• Wenqing Hao,
• Long Wang,
• Jinlei Zhang,
• Dawei Teng and
• Guorui Cao

Beilstein J. Org. Chem. 2024, 20, 280–286, doi:10.3762/bjoc.20.29

• 4aa [35] was isolated in 62% yield (Scheme 4). On the basis of the transformation of 3aa to 4aa, a tentative reaction mechanism is proposed. As shown in Scheme 5, the spiropyridazine-benzosultam 3aa was firstly oxidized to intermediate A. Next, an aziridine was formed with the hydrolysis of the amide

• regioselectivity. Comparision of previous work with this work. The effects of substituent groups on the [4 + 2] annulation reaction. Reaction conditions: 1 (1.0 mmol), 2 (1.5 mmol), Et3N (2.0 mmol), MeCN (10.0 mL), 25 °C, 2.0 h. Gram-scale synthesis of 3aa. The transformation of 3aa. The reaction mechanism of the

Unveiling the regioselectivity of rhodium(I)-catalyzed [2 + 2 + 2] cycloaddition reactions for open-cage C₇₀ production

• Cristina Castanyer,
• Anna Pla-Quintana,
• Anna Roglans,
• Albert Artigas and
• Miquel Solà

Beilstein J. Org. Chem. 2024, 20, 272–279, doi:10.3762/bjoc.20.28

• into the corresponding bis(fulleroid) product after 4 h of reaction (Figure S1 in Supporting Information File 1). Importantly, the observation of this intermediate represents an experimental proof of the proposed reaction mechanism. Confirmation that only one unit of 1a reacted with C70 in the reaction

•  1), unveiled the following reaction mechanism: initially, an oxidative coupling of the two alkyne moieties of our model 1a leads to the formation of INT 1, as previously reported [33]. This step, with a Gibbs energy barrier of 25.7 kcal·mol−1, is the rate-determining step for this process. Next, INT

Additive-controlled chemoselective inter-/intramolecular hydroamination via electrochemical PCET process

• Kazuhiro Okamoto,
• Naoki Shida and
• Mahito Atobe

Beilstein J. Org. Chem. 2024, 20, 264–271, doi:10.3762/bjoc.20.27

• hydroamination reaction products via a proton-coupled electron transfer (PCET) mechanism. Cyclic voltammetry (CV) analysis indicated that the chemoselectivity was derived from the size of the hydrogen bond complex, which consisted of the carbamate substrate and phosphate base, and could be controlled using

• of conjugate addition of a cathodically generated carbamate anion was ruled out, prompting us to consider that N-alkylation proceeded via a radical mechanism. On the other hand, the addition of 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) led to the predominant formation of cyclized dimer 4 without N

• amidyl radical generation through the PCET mechanism. The above studies provided us with valuable insights into the intriguing electrochemical behavior of 1 (Figure 3). Hydrogen bond formation between 1 and the phosphate base yielded small aggregates, the interaction efficiency of which with the

Photochromic derivatives of indigo: historical overview of development, challenges and applications

• Gökhan Kaplan,
• Zeynel Seferoğlu and
• Daria V. Berdnikova

Beilstein J. Org. Chem. 2024, 20, 228–242, doi:10.3762/bjoc.20.23

• the O atom (Figure 6b). Moreover, the data of the first systematic computational ab initio study of the molecular mechanism of the photostability of indigo [36] support these findings and additionally point out that the single proton transfer (SPT) is more favorable than the double proton transfer

• solvents and under high pressures were performed. It was found that N,N'-dibenzoylindigos underwent the thermal relaxation much more slowly than the compounds without the aromatic ring in the acyl group. The biradical mechanism (Figure 11) was found to be the preferable pathway for the thermal Z–E

• photolysis in combination with steady-state measurements [59]. It was found that the E–Z photoisomerization of 9a, 9d, 9g, 9h occurred through a singlet mechanism upon direct excitation. However, the triplet state could be achieved by a sensitized reaction. At room temperature, a transient species that could

Optimizations of lipid II synthesis: an essential glycolipid precursor in bacterial cell wall synthesis and a validated antibiotic target

• Milandip Karak,
• Cian R. Cloonan,
• Brad R. Baker,
• Rachel V. K. Cochrane and
• Stephen A. Cochrane

Beilstein J. Org. Chem. 2024, 20, 220–227, doi:10.3762/bjoc.20.22

• study the mechanism of action of antimicrobial peptides that kill bacteria through binding to these polyprenyls [21][28][29][30][31][32][33][34]. Lipid II has been of particular interest, and during our synthesis of multiple different lipid II analogues, we have developed several optimizations, which we

Copper-catalyzed multicomponent reaction of β-trifluoromethyl β-diazo esters enabling the synthesis of β-trifluoromethyl N,N-diacyl-β-amino esters

• Youlong Du,
• Haibo Mei,
• Ata Makarem,
• Ramin Javahershenas,
• Vadim A. Soloshonok and
• Jianlin Han

Beilstein J. Org. Chem. 2024, 20, 212–219, doi:10.3762/bjoc.20.21

• electron-withdrawing groups (4s and 4t) could generate the target products with moderate to good yields (46–71%). We also tried another nitrile substrate, such as cyclopropyl acetonitrile, which yielded only very small amounts of the expected product (4u). To gain insight into the mechanism of this

• ][40][41][58][59], a possible mechanism for this Cu-catalyzed reaction of β-trifluoromethyl β-amino esters was proposed in Scheme 4. Initially, β-trifluoromethyl β-amino ester 1a reacts with tert-butyl nitrite to form trifluoromethylated β-carbonyl diazo intermediate A. Then, the diazo intermediate A

• . Control experiments. Proposed reaction mechanism. Scale-up synthesis. Optimization of reaction conditions.a Supporting Information Supporting Information File 8: Experimental details and spectral data. Funding We gratefully acknowledge the financial support from the National Natural Science Foundation

Chiral phosphoric acid-catalyzed transfer hydrogenation of 3,3-difluoro-3H-indoles

• Yumei Wang,
• Guangzhu Wang,
• Yanping Zhu and
• Kaiwu Dong

Beilstein J. Org. Chem. 2024, 20, 205–211, doi:10.3762/bjoc.20.20

• mechanism of the CPA-catalyzed transfer hydrogenation reaction was proposed (Figure 2). The activation of 3,3-difluoro-substituted 3H-indole 1 by protonation through the Brønsted acid generates the iminium A. Subsequent hydrogen transfer from the Hantzsch ester gives the chiral amine 2 and pyridinium salt B

• spectroscopy and the ee values were determined by chiral HPLC. Structures of bioactive fluorinated indole derivatives. Proposed mechanism for the transfer hydrogenation reaction. Synthesis of chiral indolines via asymmetric reduction. Substrate scope of 3,3-difluoro-3H-indoles. Experiment at 2 mmol scale

Metal-catalyzed coupling/carbonylative cyclizations for accessing dibenzodiazepinones: an expedient route to clozapine and other drugs

• Amina Moutayakine and
• Anthony J. Burke

Beilstein J. Org. Chem. 2024, 20, 193–204, doi:10.3762/bjoc.20.19

• products 3e and 3g contained some unidentified impurities that were impossible to remove via chromatography). Scope of the synthesis of DBDAPs. Please note that product 4g contained some unidentified impurities that were impossible to remove via chromatography. Proposed mechanism. Explorative study of the

Comparison of glycosyl donors: a supramer approach

• Anna V. Orlova,
• Nelly N. Malysheva,
• Maria V. Panova,
• Nikita M. Podvalnyy,
• Michael G. Medvedev and
• Leonid O. Kononov

Beilstein J. Org. Chem. 2024, 20, 181–192, doi:10.3762/bjoc.20.18

• structure and the reaction mechanism are the keys to understanding chemical reactivity and selectivity [65][66][67]. In the area of carbohydrate chemistry, a lot of efforts are devoted to finding relationships between the fine details of molecular structures of both glycosylation partners (glycosyl donor

• the SN1-like mechanism to a more SN2-like mechanism occurs only (or mainly) for sialyl donor 2. Although this hypothesis can explain why the glycosylation with sialyl donor 2 exhibits substantial concentration dependence, it does not allow one even to guess why such SN1-to-SN2 cross-over did not occur

Tandem Hock and Friedel–Crafts reactions allowing an expedient synthesis of a cyclolignan-type scaffold

• Viktoria A. Ikonnikova,
• Cristina Cheibas,
• Oscar Gayraud,
• Alexandra E. Bosnidou,
• Nicolas Casaretto,
• Gilles Frison and
• Bastien Nay

Beilstein J. Org. Chem. 2024, 20, 162–169, doi:10.3762/bjoc.20.15

• photooxygenation, Hock rearrangement and Friedel–Crafts reaction, which is supposed to proceed through aldehyde 3 (see further discussion below on the reaction mechanism). To complete this exploratory work, we envisaged to add an external aromatic nucleophile to the reaction mixture, namely 1,3,5-trimethoxybenzene

• was not formed, but the formation of aldehyde 3 could be observed during TLC monitoring. Furthermore, engaging previous dihydronaphthalene 4 in a Friedel–Crafts reaction with 5 in the presence of BF3·OEt2 and MgSO4 did not afford product 6. These observations are in agreement with a mechanism

• involvement of oxocarbenium species 7 and 7’ in a Friedel–Crafts reaction with 5, to explain the formation of 6 through an interrupted Hock cleavage mechanism. Confronting the yield of this transformation (86%) and the fact that only 7’, originating from 2’, could be an intermediate towards 6 in this

Copper-promoted C5-selective bromination of 8-aminoquinoline amides with alkyl bromides

• Changdong Shao,
• Chen Ma,
• Li Li,
• Jingyi Liu,
• Yanan Shen,
• Chen Chen,
• Qionglin Yang,
• Tianyi Xu,
• Zhengsong Hu,
• Yuhe Kan and
• Tingting Zhang

Beilstein J. Org. Chem. 2024, 20, 155–161, doi:10.3762/bjoc.20.14

• gram-scale preparation was carried out using 1a, that afforded the desired product in 96% yield (Scheme 4, reaction 4). To gain more insight into the reaction mechanism, several control experiments were carried out (Scheme 5). On one hand, the failure of substrates 10–15 to participate in the reaction

• probable mechanism is proposed. As shown in Scheme 5, ethyl bromoacetate (2a) undergoes attack by the dipolar aprotic solvent DMSO to afford the intermediate A. This intermediate then reacts with the bromine anion to give intermediate B. Dimethylsulfonium bromide or dimethyl thioether/molecular bromine

• . Reaction conditions: 1a (0.2 mmol), 2 (0.8 mmol), Cu(OAc)2·H2O (20 mol %), K2CO3 (0.2 mmol), DMSO (1.0 mL), stirred under air at 100 ºC for 12 h. Isolated yield. Further substrate scope investigations and gram-scale application. Control experiments and proposed mechanism. Optimization of the reaction

Perspectives on push–pull chromophores derived from click-type [2 + 2] cycloaddition–retroelectrocyclization reactions of electron-rich alkynes and electron-deficient alkenes

• Michio Yamada

Beilstein J. Org. Chem. 2024, 20, 125–154, doi:10.3762/bjoc.20.13

• -order kinetics, indicating a bimolecular process. Furthermore, their findings elucidated a compelling linear free-energy relationship between the rate constants and electronic characteristics of the para-substituents of the DCV electrophiles, implying a dipolar, zwitterionic mechanism. The researchers

• generalizing the elucidated reaction mechanism to other [2 + 2] CA–RE reactions involving TCNE and TCNQ as electrophiles might be difficult. They emphasized the significance of considering a pre-equilibrium state of the charge-transfer complexes between the alkynes and alkenes and mentioned that the

• emission increases when they are excited at 420 nm, resulting in white-light emission. The underlying mechanism governing these luminescence properties remains unknown. It has been established that 75 does not exhibit luminescence in its solid-state form, which is attributed to the quenching effects

Visible-light-induced radical cascade cyclization: a catalyst-free synthetic approach to trifluoromethylated heterocycles

• Chuan Yang,
• Wei Shi,
• Jian Tian,
• Lin Guo,
• Yating Zhao and
• Wujiong Xia

Beilstein J. Org. Chem. 2024, 20, 118–124, doi:10.3762/bjoc.20.12

• radicals. This method allows the efficient synthesis of various indole derivatives without the need of photocatalysts or transition-metal catalysts. Mechanism experiments indicate that the process involves a radical chain process initiated by the homolysis of Umemoto's reagent. This straightforward method

• precedent work [32] (see Supporting Information File 1), and the calculated quantum yield was 2.2, which revealed that one photon generates more than one product molecule. Based on preliminary experiments and previous reports [33][34], we propose a plausible mechanism (Scheme 4). Upon light irradiation

• derivatives. UV–vis spectra of substrates; [1a] 0.33 M, [2a] 0.11 M. Selected works for the construction of dihydropyrido[1,2-a]indolones and current methodology. Substrate scope of the cascade reaction. Radical trapping experiment. Plausible reaction mechanism. Optimization of reaction conditions.a

Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• , even under anaerobic conditions. Investigations of the mechanism of the DNA damage revealed the involvement of intermediate hydroxyl radicals and C-centered radicals. Under aerobic conditions, singlet oxygen only contributes to marginal extent to the DNA damage. Keywords: DNA intercalators

• cancer [39], and bacterial, fungal, parasitic and viral infections [40][41]. In general, PDT operates on the basis of a photosensitizer, which generates reactive intermediates upon irradiation [42][43][44][45]. Hence, in the type-I mechanism the photosensitizer induces the formation of reactive oxygen

• species (ROS), such peroxyl, alkoxy and hydroxyl radicals, or carbon-centered radicals, which subsequently induce DNA strand cleavage. In the type-II mechanism, a triplet-excited photosensitizer reacts with molecular oxygen to give highly reactive singlet oxygen, 1O2, as reactive intermediate, which in

Electron-beam-promoted fullerene dimerization in nanotubes: insights from DFT computations

• Laura Abella,
• Gerard Novell-Leruth,
• Josep M. Ricart,
• Josep M. Poblet and
• Antonio Rodríguez-Fortea

Beilstein J. Org. Chem. 2024, 20, 92–100, doi:10.3762/bjoc.20.10

• and reversible process named phase 1. We find that the barriers for the radical cation mechanism are significantly lower than those found for the neutral pathway. The peapod is mainly providing one-dimensional confinement for the reaction to take place in a more efficient way. Car–Parrinello

• -dimensional space within the CNT and compared the results with those for the same reaction in the gas phase. We assumed that the cation radical mechanism takes place, that is, the ionized CNT generates a radical cation C60•+ that reacts with a C60 molecule to yield different C120•+ dimers. The energies for

• Waals complex), so the two profiles are not that different, according to the energetic spam model by Kozuch and Shaik [20]. In any case, the mechanism via radical cation is the most favorable, both kinetically and thermodynamically. For dimer 1-D2h•+, the energy profile up to I-1 is very similar to that

Using the phospha-Michael reaction for making phosphonium phenolate zwitterions

• Matthias R. Steiner,
• Max Schmallegger,
• Larissa Donner,
• Johann A. Hlina,
• Christoph Marschner,
• Judith Baumgartner and
• Christian Slugovc

Beilstein J. Org. Chem. 2024, 20, 41–51, doi:10.3762/bjoc.20.6

• ) at 23 °C. Reaction of 1 with various Michael acceptors (EWG = electron-withdrawing group) forming the zwitterions 2a–i; the reactions were performed in dichloromethane at room temperature. Proposed mechanism for intramolecular proton transfer in zwitterion formation with Michael acceptors bearing a

Cycloaddition reactions of heterocyclic azides with 2-cyanoacetamidines as a new route to C,N-diheteroarylcarbamidines

• Pavel S. Silaichev,
• Tetyana V. Beryozkina,
• Vsevolod V. Melekhin,
• Valeriy O. Filimonov,
• Andrey N. Maslivets,
• Vladimir G. Ilkin,
• Wim Dehaen and
• Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2024, 20, 17–24, doi:10.3762/bjoc.20.3

• the structure of the prepared compounds. To explain the outcome of the tandem reaction of 3,3-diaminoacrylonitriles to heterocyclic azides, a tentative mechanism for the formation of 1,2,3-triazoles 3 from acrylonitriles 1 and azides 2 is shown in Scheme 3. Firstly, treatment with a base, leads to

• (method A)a; 1 (0.5 mmol), 2 (0.5 mmol), NaOH (0.5 mmol), EtOH (2 mL), 0 °C → rt, 30 min (method B)b. Proposed mechanism for the formation of triazoles 3. Optimization of the reaction of amidine 1a with 6-azidopyrimidine-2,4-dione 2a.a Cytotoxicity index (IC50 ± SE) in µM of the studied compounds on human

Synthesis of N-acyl carbazoles, phenoxazines and acridines from cyclic diaryliodonium salts

• Nils Clamor,
• Mattis Damrath,
• Thomas J. Kuczmera,
• Daniel Duvinage and
• Boris J. Nachtsheim

Beilstein J. Org. Chem. 2024, 20, 12–16, doi:10.3762/bjoc.20.2

• the mechanism of opening of the iodane, we used 2,2'-diiodobiphenyl as the starting material, leading to no formation of 2a. Thus, we confirmed that our system does not activate 2,2'-diiodobiphenyl. Therefore, we applied the conditions described in Table 1, entry 7 for further investigation. With the