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Search for "single-crystal X-ray diffraction" in Full Text gives 224 result(s) in Beilstein Journal of Organic Chemistry. Showing first 200.

Palladium-catalyzed regioselective C1-selective nitration of carbazoles

  • Vikash Kumar,
  • Jyothis Dharaniyedath,
  • Aiswarya T P,
  • Sk Ariyan,
  • Chitrothu Venkatesh and
  • Parthasarathy Gandeepan

Beilstein J. Org. Chem. 2025, 21, 2479–2488, doi:10.3762/bjoc.21.190

Graphical Abstract
  • thoroughly characterized by 1H and 13C NMR spectroscopy, HRMS, and single-crystal X-ray diffraction analysis (Figure 1). A range of solvents was subsequently screened; however, none provided an improvement over 1,4-dioxane for this transformation (Table 1, entries 2 and 3). In addition to AgNO3, other silver
  • of our method. Key mechanistic studies. Optimization studies.a Supporting Information Supporting Information File 9: Experiment details, characterization data, copy of NMR spectra of synthesized compounds, and single-crystal X-ray diffraction data. Supporting Information File 10: CIF file for 2a
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Published 10 Nov 2025

Thiadiazino-indole, thiadiazino-carbazole and benzothiadiazino-carbazole dioxides: synthesis, physicochemical and early ADME characterization of representatives of new tri-, tetra- and pentacyclic ring systems and their intermediates

  • Gyöngyvér Pusztai,
  • László Poszávácz,
  • Anna Vincze,
  • András Marton,
  • Ahmed Qasim Abdulhussein,
  • Judit Halász,
  • András Dancsó,
  • Gyula Simig,
  • György Tibor Balogh and
  • Balázs Volk

Beilstein J. Org. Chem. 2025, 21, 2220–2233, doi:10.3762/bjoc.21.169

Graphical Abstract
  • closed vial in which the reaction is carried out does not contain the necessary amount of oxygen. Structure determination of the products was also supported by single-crystal X-ray diffraction in the case of several representatives: 3b, 3d, 3e, 3g, 3h, (E)-7a, 7b, 7d, 7e, (E)-7f, (Z)-7h, 7i, and (E)-9a
  • F254 and by UHPLC–MS on a Shimadzu LC-40 UHPLC equipment equipped with a quaternary pump, degasser, autosampler, column oven, diode array detector, and an LCMS-2020 quadrupole mass spectrometer. Single-crystal X-ray diffraction (SC-XRD) measurements were carried out on a Rigaku R-Axis Spider
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Published 21 Oct 2025

Bioinspired total syntheses of natural products: a personal adventure

  • Zhengyi Qin,
  • Yuting Yang,
  • Nuran Yan,
  • Xinyu Liang,
  • Zhiyu Zhang,
  • Yaxuan Duan,
  • Huilin Li and
  • Xuegong She

Beilstein J. Org. Chem. 2025, 21, 2048–2061, doi:10.3762/bjoc.21.160

Graphical Abstract
  • products capillosanol and chabranol, respectively [18]. Chabranol was identified to contain a new bridged skeleton through extensive NMR experiments. However, no single-crystal X-ray diffraction analysis was conducted, making the structural determinations not that solid. It showed moderate cytotoxicity
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Published 09 Oct 2025

Stereoselective electrochemical intramolecular imino-pinacol reaction: a straightforward entry to enantiopure piperazines

  • Margherita Gazzotti,
  • Fabrizio Medici,
  • Valerio Chiroli,
  • Laura Raimondi,
  • Sergio Rossi and
  • Maurizio Benaglia

Beilstein J. Org. Chem. 2025, 21, 1897–1908, doi:10.3762/bjoc.21.147

Graphical Abstract
  • absolute configuration of the piperazine formed, a pure sample of compound 2b derived from (1R,2R)-trans-diaminocyclohexane was crystallized from a chloroform solution resulting in the formation of white crystals suitable for single crystal X-ray diffraction studies. The absolute configuration of the
  • procedures and physical data for the new compounds, copies of 1H and 13C NMR spectra of the prepared compounds. Acknowledgements The authors thank Prof. A. Puglisi (Università degli Studi di Milano) for valuable discussions. For the single-crystal X-ray diffraction analysis the Unitech COSPECT (Università
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Published 12 Sep 2025

Preparation of spirocyclic oxindoles by cyclisation of an oxime to a nitrone and dipolar cycloaddition

  • Beth L. Ritchie,
  • Alexandra Longcake and
  • Iain Coldham

Beilstein J. Org. Chem. 2025, 21, 1890–1896, doi:10.3762/bjoc.21.146

Graphical Abstract
  • of an oxime, itself prepared in situ from an aldehyde. The stereochemistry of one of the spirooxindoles was determined by single crystal X-ray diffraction studies via crystallisation using encapsulated nanodroplet crystallisation (ENaCt) protocols. The chemistry involves cascade or tandem
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Published 11 Sep 2025

Facile synthesis of hydantoin/1,2,4-oxadiazoline spiro-compounds via 1,3-dipolar cycloaddition of nitrile oxides to 5-iminohydantoins

  • Juliana V. Petrova,
  • Varvara T. Tkachenko,
  • Victor A. Tafeenko,
  • Anna S. Pestretsova,
  • Vadim S. Pokrovsky,
  • Maxim E. Kukushkin and
  • Elena K. Beloglazkina

Beilstein J. Org. Chem. 2025, 21, 1552–1560, doi:10.3762/bjoc.21.118

Graphical Abstract
  • -oxadiazolines [40]. Therefore, single crystal X-ray diffraction analysis is typically used to confirm the structure, as we have applied for the hydantoin/1,2,4-oxadiazoline spiro-compounds 5k (CCDC 2432465) and 5l (CCDC 2432466) (for details see Supporting Information File 1). The effect of the substituents on
  • Ministry of Science and Higher Education of Russia no. 075-01551-23-00 (FSSF-2023-0006). Single crystal X-ray diffraction analysis study was supported by the RUDN University Scientific Projects Grant System, project №021408-2-000.
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Published 31 Jul 2025

Ambident reactivity of enolizable 5-mercapto-1H-tetrazoles in trapping reactions with in situ-generated thiocarbonyl S-methanides derived from sterically crowded cycloaliphatic thioketones

  • Grzegorz Mlostoń,
  • Małgorzata Celeda,
  • Marcin Palusiak,
  • Heinz Heimgartner,
  • Marta Denel-Bobrowska and
  • Agnieszka B. Olejniczak

Beilstein J. Org. Chem. 2025, 21, 1508–1519, doi:10.3762/bjoc.21.113

Graphical Abstract
  • this product, without contamination with 10k, was feasible. Thioaminal 9i and dithioacetal 10i derived from 1-cyclohexyl-5-mercapto-4H-tetrazole (4b) could be isolated as stable, crystalline products and the postulated structures were unambiguously confirmed by the single crystal X-ray diffraction
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Published 23 Jul 2025

Wittig reaction of cyclobisbiphenylenecarbonyl

  • Taito Moribe,
  • Junichiro Hirano,
  • Hideaki Takano,
  • Hiroshi Shinokubo and
  • Norihito Fukui

Beilstein J. Org. Chem. 2025, 21, 1454–1461, doi:10.3762/bjoc.21.107

Graphical Abstract
  • byproduct and exhibited similar polarity as compound 5. The obtained compounds 3, 4, and 5 were identified using nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS) (see Supporting Information File 1) as well as single crystal X-ray diffraction analysis (vide infra). Furthermore, the
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Published 14 Jul 2025

Advances in nitrogen-containing helicenes: synthesis, chiroptical properties, and optoelectronic applications

  • Meng Qiu,
  • Jing Du,
  • Nai-Te Yao,
  • Xin-Yue Wang and
  • Han-Yuan Gong

Beilstein J. Org. Chem. 2025, 21, 1422–1453, doi:10.3762/bjoc.21.106

Graphical Abstract
  • in solution and structurally confirmed via single-crystal X-ray diffraction. It demonstrated the highest CPL performance among the series, with a |glum| value of 3.5 × 10−3 and a photoluminescence quantum yield (PLQY) of 0.31, indicating its potential as a chiral emissive material. Building upon this
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Published 11 Jul 2025

Reactions of acryl thioamides with iminoiodinanes as a one-step synthesis of N-sulfonyl-2,3-dihydro-1,2-thiazoles

  • Vladimir G. Ilkin,
  • Pavel S. Silaichev,
  • Valeriy O. Filimonov,
  • Tetyana V. Beryozkina,
  • Margarita D. Likhacheva,
  • Pavel A. Slepukhin,
  • Wim Dehaen and
  • Vasiliy A. Bakulev

Beilstein J. Org. Chem. 2025, 21, 1397–1403, doi:10.3762/bjoc.21.104

Graphical Abstract
  • 2,3-dihydro-1,2-thiazole ring are in the range of 75.3–72.4 ppm and signals of the carbon atom of the cyano group in the range of 117.7–116.6 ppm. The structure of 2,3-dihydro-1,2-thiazole 3aa was additionally confirmed by single crystal X-ray diffraction (Figure 2). According to the X-ray diffraction
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Published 10 Jul 2025

A multicomponent reaction-initiated synthesis of imidazopyridine-fused isoquinolinones

  • Ashutosh Nath,
  • John Mark Awad and
  • Wei Zhang

Beilstein J. Org. Chem. 2025, 21, 1161–1169, doi:10.3762/bjoc.21.92

Graphical Abstract
  • , Supporting Information File 1), but it was not stable enough for isolation. The structure of 8a was confirmed by single crystal X-ray diffraction analysis. The optimized reaction conditions were used to evaluate the substrate scope of the synthesis of imidazopyridine-fused isoquinolinones 8 (Scheme 3). The
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Published 13 Jun 2025

Studies on the syntheses of β-carboline alkaloids brevicarine and brevicolline

  • Benedek Batizi,
  • Patrik Pollák,
  • András Dancsó,
  • Péter Keglevich,
  • Gyula Simig,
  • Balázs Volk and
  • Mátyás Milen

Beilstein J. Org. Chem. 2025, 21, 955–963, doi:10.3762/bjoc.21.79

Graphical Abstract
  • catalyst, overreduced product 31, i.e., the tetrahydro derivative of racemic brevicolline ((±)-1) was obtained in 91% yield. Structure determination of 31 was supported by single-crystal X-ray diffraction, as well (Figure 2). Changing the catalyst [Pd(OH)2, Ru, Rh], did not alter the course of the reaction
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Published 20 May 2025

A convergent synthetic approach to the tetracyclic core framework of khayanolide-type limonoids

  • Zhiyang Zhang,
  • Jialei Hu,
  • Hanfeng Ding,
  • Li Zhang and
  • Peirong Rao

Beilstein J. Org. Chem. 2025, 21, 926–934, doi:10.3762/bjoc.21.75

Graphical Abstract
  • tricyclo[4.2.110,30.11,4]decane ring system. Additionally, krishnolides A and C contain 9–11 stereogenic centers and exhibit diverse oxidation patterns. Their relative and absolute configurations were determined through NMR, HRESIMS and ECD experiments, as well as single crystal X-ray diffraction analysis
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Published 12 May 2025

Silver(I) triflate-catalyzed post-Ugi synthesis of pyrazolodiazepines

  • Muhammad Hasan,
  • Anatoly A. Peshkov,
  • Syed Anis Ali Shah,
  • Andrey Belyaev,
  • Chang-Keun Lim,
  • Shunyi Wang and
  • Vsevolod A. Peshkov

Beilstein J. Org. Chem. 2025, 21, 915–925, doi:10.3762/bjoc.21.74

Graphical Abstract
  • trifluoromethyl and nitro groups. Furthermore, substrates 15m–o derived from aliphatic amines, also performed well, furnishing pyrazolodiazepines 16m–o in up to 89% yield. The structure of 16m, a representative compound of this series, was confirmed through single-crystal X-ray diffraction (scXRD) analysis
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Published 08 May 2025

4-(1-Methylamino)ethylidene-1,5-disubstituted pyrrolidine-2,3-diones: synthesis, anti-inflammatory effect and in silico approaches

  • Nguyen Tran Nguyen,
  • Vo Viet Dai,
  • Luc Van Meervelt,
  • Do Thi Thao and
  • Nguyen Minh Thong

Beilstein J. Org. Chem. 2025, 21, 817–829, doi:10.3762/bjoc.21.65

Graphical Abstract
  • spectroscopy, the structure of 4-(1-methylamino)ethylidene-1,5-diphenylpyrrolidine-2,3-dione (5a) was also verified through single-crystal X-ray diffraction. Furthermore, the synthesized molecules were evaluated for compliance with established drug-likeness rules (Lipinski, Veber, Ghose, Egan, and Muegge), as
  • single-crystal X-ray diffraction [19]. According to a previous publication, the condensation between pyrrolidine-2,3-diones and an amine as nucleophile normally occurred at the 3-position of nitrogen-containing heterocyclic ring which results in the corresponding enamine product [18]. However, the
  • -disubstituted pyrrolidine-2,3-diones were successfully synthesized via reversible transimination reaction. The structure of all compounds was evaluated using nuclear magnetic resonance (NMR) spectroscopy and, especially, with the molecular structure of compound 5a further confirmed through single-crystal X-ray
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Published 24 Apr 2025

Cryptophycin unit B analogues

  • Thomas Schachtsiek,
  • Jona Voss,
  • Maren Hamsen,
  • Beate Neumann,
  • Hans-Georg Stammler and
  • Norbert Sewald

Beilstein J. Org. Chem. 2025, 21, 526–532, doi:10.3762/bjoc.21.40

Graphical Abstract
  • control of equivalents and pH, or Leuckart–Wallach-like reaction with ammonium formate and Pd/C [25] provided monomethylaniline 7 in 37% and 35% yield, respectively. The absolute structure of monomethylaniline 7 was confirmed by single-crystal X-ray diffraction measurements (Figure 2). Compound 7
  • conjugation handles in unit B. IC50 values given against (a) CCRF-CEM [20] and (b) KB-3-1 [21] cell lines. C: Cryptophycin-52 derivatives synthesised in this work. Molecular structure of Boc-ᴅ-Phe(4-NHMe)-OMe 7 as determined by single-crystal X-ray diffraction measurements. Thermal ellipsoids depicted at 50
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Published 07 Mar 2025

Unprecedented visible light-initiated topochemical [2 + 2] cycloaddition in a functionalized bimane dye

  • Metodej Dvoracek,
  • Brendan Twamley,
  • Mathias O. Senge and
  • Mikhail A. Filatov

Beilstein J. Org. Chem. 2025, 21, 500–509, doi:10.3762/bjoc.21.37

Graphical Abstract
  • Figure 2b. We hypothesized that this reaction occurred in the solid state, and further investigations confirmed this. To validate our findings, we employed single-crystal X-ray diffraction, which revealed the packing mode in the crystal and identified any photoproducts formed. Two additional compounds
  • included two additional bimane samples, Me2B and Me4B. These samples were crystallized from a MeOH–DCM 1:1 (v/v) mixture which was left to slowly evaporate over the course of several days at room temperature, followed by single-crystal X-ray diffraction to determine their structure (Figure 4) and crystal
  • fluorescence spectrum and η is the refractive index of the solvent. Single crystal X-ray diffraction studies Crystals of Me4B, Cl2B (A), (B), (C), and Me2B were mounted on a MiTeGen micromount with NVH immersion oil. Data were collected from a shock-cooled single crystal at 100(2) K on a Bruker Apex Kappa Duo
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Published 05 Mar 2025

Synthesis and characterizations of highly luminescent 5-isopropoxybenzo[rst]pentaphene

  • Islam S. Marae,
  • Jingyun Tan,
  • Rengo Yoshioka,
  • Zakaria Ziadi,
  • Eugene Khaskin,
  • Serhii Vasylevskyi,
  • Ryota Kabe,
  • Xiushang Xu and
  • Akimitsu Narita

Beilstein J. Org. Chem. 2025, 21, 270–276, doi:10.3762/bjoc.21.19

Graphical Abstract
  • analysis was obtained by slow evaporation of a diethyl ether/n-hexane solution, enabling its unambiguous structural determination by single-crystal X-ray diffraction (Figure 1). The planar BPP core and the isopropyloxy group on the zigzag edge are clearly visualized (Figure 1a and b). In a unit cell
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Published 04 Feb 2025

Synthesis, characterization, and photophysical properties of novel 9‑phenyl-9-phosphafluorene oxide derivatives

  • Shuxian Qiu,
  • Duan Dong,
  • Jiahui Li,
  • Huiting Wen,
  • Jinpeng Li,
  • Yu Yang,
  • Shengxian Zhai and
  • Xingyuan Gao

Beilstein J. Org. Chem. 2024, 20, 3299–3305, doi:10.3762/bjoc.20.274

Graphical Abstract
  • HRMS spectrometry were in full agreement with the expected structures, and single-crystal X-ray diffraction analysis was conducted to confirm the structure of compound 7-H. Moreover, the photophysical properties of these PhFlOP derivatives were determined by UV–vis absorption and photoluminescence
  • simple. The structure of 7-H was confirmed by single-crystal X-ray diffraction. Furthermore, UV–vis absorption and PL studies were carried out to explore the photophysical properties of these PhFlOP derivatives. Investigations for further applications of the PhFlOP-based emitters 7 are still ongoing. An
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Published 30 Dec 2024

Reactivity of hypervalent iodine(III) reagents bearing a benzylamine with sulfenate salts

  • Beatriz Dedeiras,
  • Catarina S. Caldeira,
  • José C. Cunha,
  • Clara S. B. Gomes and
  • M. Manuel B. Marques

Beilstein J. Org. Chem. 2024, 20, 3281–3289, doi:10.3762/bjoc.20.272

Graphical Abstract
  • benziodoxolone, 2d) were obtained with quantitative yields, as white solids on the gram-scale, easy to manipulate and long-term stable below 0 °C. Crystals of compound 2d were successfully obtained and its molecular structure was confirmed through single-crystal X-ray diffraction. The X-ray analysis revealed a
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Published 19 Dec 2024

Synthesis of 2H-azirine-2,2-dicarboxylic acids and their derivatives

  • Anastasiya V. Agafonova,
  • Mikhail S. Novikov and
  • Alexander F. Khlebnikov

Beilstein J. Org. Chem. 2024, 20, 3191–3197, doi:10.3762/bjoc.20.264

Graphical Abstract
  • single-crystal X-ray diffraction analysis. The reaction of azetidine with diacyl chloride 2a gave a complex mixture of products, and O-methyl hydroxylamine did not react. Diacyl chloride 2a reacts with methanol and ethanol to give diesters 11a,b (Scheme 5). An experiment with isoxazole 1a and methanol on
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Published 05 Dec 2024

Controlled oligomerization of [1.1.1]propellane through radical polarity matching: selective synthesis of SF5- and CF3SF4-containing [2]staffanes

  • Jón Atiba Buldt,
  • Wang-Yeuk Kong,
  • Yannick Kraemer,
  • Masiel M. Belsuzarri,
  • Ansh Hiten Patel,
  • James C. Fettinger,
  • Dean J. Tantillo and
  • Cody Ross Pitts

Beilstein J. Org. Chem. 2024, 20, 3134–3143, doi:10.3762/bjoc.20.259

Graphical Abstract
  • truncated after incorporation of two bicyclopentane (BCP) units. Synthetic and computational studies suggest this phenomenon can be attributed to alternating radical polarity matching. In addition, single-crystal X-ray diffraction (SC-XRD) data reveal structurally interesting features of the CF3SF4
  • for the first time created an opportunity for structural analysis. We previously reported and contextualized single-crystal X-ray diffraction (SC-XRD) data on 2 [36]; thus, we proceeded to grow crystals of 3 suitable for X-ray analysis through slow evaporation of ethyl acetate. To our surprise, an
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Published 29 Nov 2024

The charge transport properties of dicyanomethylene-functionalised violanthrone derivatives

  • Sondos A. J. Almahmoud,
  • Joseph Cameron,
  • Dylan Wilkinson,
  • Michele Cariello,
  • Claire Wilson,
  • Alan A. Wiles,
  • Peter J. Skabara and
  • Graeme Cooke

Beilstein J. Org. Chem. 2024, 20, 2921–2930, doi:10.3762/bjoc.20.244

Graphical Abstract
  • otherwise. The absence of transition states was confirmed by the absence of imaginary frequencies in vibrational frequency calculations. The long side chains were replaced by methyl units to aid the convergence of the geometry optimisations. Crystallography Single crystal X-ray diffraction data for 3b were
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Published 13 Nov 2024

Anion-dependent ion-pairing assemblies of triazatriangulenium cation that interferes with stacking structures

  • Yohei Haketa,
  • Takuma Matsuda and
  • Hiromitsu Maeda

Beilstein J. Org. Chem. 2024, 20, 2567–2576, doi:10.3762/bjoc.20.215

Graphical Abstract
  • (100), 595.3 (40), 596.3 (10), [M − BF4]+ calcd for C43H36N3, 594.29; (negative) 86.0 (20), 87.0 (100); [M – C43H36N3]− calcd for BF4, 87.00. This compound was further characterized by single-crystal X-ray diffraction analysis. 4,8,12-Tris(2,6-dimethylphenyl)-4,8,12-triazatriangulenium as a PF6− ion
  • (0.21); MALDI–TOF MS (m/z) (% intensity): (positive) 594.3 (100), 595.3 (40), 596.3 (10), [M − F6P]+ calcd for C43H36N3, 594.29; (negative) 145.1 (100), [M − C49H30N3]− calcd for F6P, 144.96. This compound was further characterized by single-crystal X-ray diffraction analysis. 4,8,12-Tris(2,6
  • –TOF MS (m/z) (% intensity): (positive) 594.3 (100), 595.3 (40), 596.3 (10), [M − C24BF20]+ calcd for C43H36N3, 594.29; (negative) 678.0 (20), 679.0 (100), 680.0 (20), [M – C43H36N3]– calcd for C24BF20, 678.98. This compound was further characterized by single-crystal X-ray diffraction analysis. 4,8,12
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Published 10 Oct 2024

HFIP as a versatile solvent in resorcin[n]arene synthesis

  • Hormoz Khosravi,
  • Valeria Stevens and
  • Raúl Hernández Sánchez

Beilstein J. Org. Chem. 2024, 20, 2469–2475, doi:10.3762/bjoc.20.211

Graphical Abstract
  • compounds. Acknowledgements This research was supported through instrumentation made available through the Shared Instrumentation Authority at Rice University. We thank Dr. Christopher L. Pennington for assistance with HRMS data collection and Dr. Hong-Lei Xu for help with single-crystal X-ray diffraction
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Published 02 Oct 2024
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